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  1. IGB
  2. IGBF-4176

Compare top 10 genes in the Kelsey unpol data.

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        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
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          Description

          We need to look at the top 10 genes (p - adjusted) when done Cedar's way, Brandon's way at 8 hours.

          And then look at 3 hours.

          And then across the varieties.

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              robofjoy Robert Reid added a comment -

              Instead it is 5 genes.
              And Kelsey has provided us with a gene list of interest:

              https://docs.google.com/spreadsheets/d/1kV--PRog6wHw7--xbqElO4cJmB6wv95wjtmpgDFWFCE/edit?usp=sharing

              The top 10 genes were indeed different than Cedar's list. But we have a clear understanding as to why. (deseq mixed model, more data incluided, Cedar subsets his data prior to analysis).

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              robofjoy Robert Reid added a comment - Instead it is 5 genes. And Kelsey has provided us with a gene list of interest: https://docs.google.com/spreadsheets/d/1kV--PRog6wHw7--xbqElO4cJmB6wv95wjtmpgDFWFCE/edit?usp=sharing The top 10 genes were indeed different than Cedar's list. But we have a clear understanding as to why. (deseq mixed model, more data incluided, Cedar subsets his data prior to analysis).

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                • Assignee:
                  robofjoy Robert Reid
                  Reporter:
                  robofjoy Robert Reid
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                    Updated:
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