Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: 10.2.0
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Labels:None
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Story Points:2
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Epic Link:
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Sprint:Spring 7, Spring 8, Summer 1
Description
When the user wants to Color the reads based on SAMtags, the user must first select the SAMtag key that IGB should use as the parameter to compare (such as "CR" or "CB") and then add SAMtags values to the Edit Tag and Color window. If the user follows that order and presses the Save and Apply button in the table window and then click OK in the Color by window, things work as expected.
However, if the user forgets to choose the SAMtag key before saving the values then its too late. The only recourse then is to open Color by window, change the key and then open the Edit Tag and Color window, click on Save and Apply to register the change in SAMTags key.
Example Scenario:
1) User opens the Color by window
2) Does not notice the SAMtag key is default "CR" (and the user wants to compare "CB" values)
3) Opens Edit Tag and Color window
4) Adds values and clicks Save and Apply button
5) Clicks OK in Color by window
6) Waits for IGB to color the reads and it colors everything light grey
7) Realizes the mistake, goes back to Color by window, changes key to "CB", clicks OK
8) Nothing changes but user waits for a while expecting things to change.
This ticket is created to address this issue. In other Color by options such as Property, the value is not retained after the window is closed so this functionality is not needed for any other Color by options .This issue might require making changes to Color by methods that is used by other options but the changes should only apply to SAMtags.
Attachments
Issue Links
Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link | IGBF-3765 [ 22984 ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Description |
When the user wants to Color the reads based on SAMtags, the user must first select the SAMtag key that IGB should use as the parameter to compare (such as "CR" or "CB") and then add SAMtags values to the Edit Tag and Color window. If the user follows that order and presses the Save and Apply button in the table window and then click OK in the Color by window, things work as expected.
However, if the user forgets to choose the SAMtag key before saving the values then its too late. The only recourse then is to open Color by window, change the key and then open the Edit Tag and Color window, click on Save and Apply to register the change in SAMTags key. Example Scenario: 1) User opens the Color by window 2) Does not notice the SAMtag key is default "CR" (and the user wants to compare "CB" values) 3) Opens Edit Tag and Color window 4) Adds values and clicks Save and Apply button 5) Clicks OK in Color by window 6) Waits for IGB to color the reads and it colors everything light grey 7) Realizes the mistake, goes back to Color by window, changes key to "CB", clicks OK 8) Nothing changes but user waits for a while expecting things to change. This ticket is created to address this issue. |
When the user wants to Color the reads based on SAMtags, the user must first select the SAMtag key that IGB should use as the parameter to compare (such as "CR" or "CB") and then add SAMtags values to the Edit Tag and Color window. If the user follows that order and presses the Save and Apply button in the table window and then click OK in the Color by window, things work as expected.
However, if the user forgets to choose the SAMtag key before saving the values then its too late. The only recourse then is to open Color by window, change the key and then open the Edit Tag and Color window, click on Save and Apply to register the change in SAMTags key. Example Scenario: 1) User opens the Color by window 2) Does not notice the SAMtag key is default "CR" (and the user wants to compare "CB" values) 3) Opens Edit Tag and Color window 4) Adds values and clicks Save and Apply button 5) Clicks OK in Color by window 6) Waits for IGB to color the reads and it colors everything light grey 7) Realizes the mistake, goes back to Color by window, changes key to "CB", clicks OK 8) Nothing changes but user waits for a while expecting things to change. This ticket is created to address this issue. In other Color by options such as Property, the value is not retained after the window is closed so this functionality is not needed for any other Color by options .This issue might require making changes to Color by methods that is used by other options but the changes should only apply to SAMtags. |
| Sprint | Spring 7 [ 216 ] | Spring 7, Spring 8 [ 216, 217 ] |
| Rank | Ranked higher |
| Summary | Fix changing the SAMtag error | Fix SAMtag selection change error |
| Attachment | New Design.png [ 18688 ] |
| Attachment | New Design SAMtag window.png [ 18689 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Assignee | Karthik Raveendran [ karthik ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Assignee | Ann Loraine [ aloraine ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Assignee | Ann Loraine [ aloraine ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Status | Post-merge Testing In Progress [ 10003 ] | Merged Needs Testing [ 10002 ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Assignee | Nowlan Freese [ nfreese ] |
| Status | Post-merge Testing In Progress [ 10003 ] | Merged Needs Testing [ 10002 ] |
| Assignee | Nowlan Freese [ nfreese ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Status | Post-merge Testing In Progress [ 10003 ] | To-Do [ 10305 ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Assignee | Paige Kulzer [ pkulzer ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Assignee | Paige Kulzer [ pkulzer ] | Karthik Raveendran [ karthik ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Assignee | Karthik Raveendran [ karthik ] |
| Sprint | Spring 7, Spring 8 [ 216, 217 ] | Spring 7, Spring 8, Summer 1 [ 216, 217, 218 ] |
| Rank | Ranked higher |
| Assignee | Ann Loraine [ aloraine ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Assignee | Ann Loraine [ aloraine ] |
| Assignee | Paige Kulzer [ pkulzer ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Resolution | Done [ 10000 ] | |
| Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |
| Assignee | Paige Kulzer [ pkulzer ] | Karthik Raveendran [ karthik ] |
| Fix Version/s | 10.2.0 [ 11100 ] |