Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:1.5
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Epic Link:
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Sprint:Fall 4, Fall 5
Description
Situation: Dr. Kent Chapman, a professor from the University of North Texas, attended my talk at the SS-ASPB meeting earlier this year. He's followed up with me after the conference to request that the jojoba genome be added to IGB. We recently integrated GenArk, a genome-rich datasource, with IGB, but they don't yet host this genome, either.
Task: Add the jojoba (Simmondsia chinensis) genome to IGB. Kent co-authored a paper describing this new genome assembly which I'll link below. The genome assembly and meta-data has been deposited in the Beijing Institute of Genomics (BIG) data center under the accession no. GWHAASQ00000000.
Link to the paper: https://doi.org/10.1126/sciadv.aay3240
Link to the genome/annotations: https://ngdc.cncb.ac.cn/gwh/Assembly/486/show
Attachments
Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link | IGBF-1765 [ 17855 ] |
| Rank | Ranked higher |
| Sprint | Fall 4 [ 227 ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Description |
*Situation:* Dr. Kent Chapman, a professor from the University of North Texas, attended my talk at the SS-ASPB meeting earlier this year. He's followed up with me after the conference to request that the jojoba genome be added to IGB. We recently integrated GenArk, a genome-rich datasource, with IGB, but they don't yet host this genome, either.
*Task:* Add the jojoba (_Simmondsia chinensis_) genome to IGB. Kent co-authored a paper describing this new genome assembly which I'll link below. The genome assembly and meta-data has been deposited in the Beijing Institute of Genomics (BIG) data center under the accession no. *GWHAASQ00000000*. *Link to the paper:* https://doi.org/10.1126/sciadv.aay3240 *Link to the database:* https://ngdc.cncb.ac.cn/gwh/ |
*Situation:* Dr. Kent Chapman, a professor from the University of North Texas, attended my talk at the SS-ASPB meeting earlier this year. He's followed up with me after the conference to request that the jojoba genome be added to IGB. We recently integrated GenArk, a genome-rich datasource, with IGB, but they don't yet host this genome, either.
*Task:* Add the jojoba (_Simmondsia chinensis_) genome to IGB. Kent co-authored a paper describing this new genome assembly which I'll link below. The genome assembly and meta-data has been deposited in the Beijing Institute of Genomics (BIG) data center under the accession no. *GWHAASQ00000000*. *Link to the paper:* https://doi.org/10.1126/sciadv.aay3240 *Link to the genome/annotations:* https://ngdc.cncb.ac.cn/gwh/Assembly/486/show |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Assignee | Paige Kulzer [ pkulzer ] | Nowlan Freese [ nfreese ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | To-Do [ 10305 ] |
| Assignee | Nowlan Freese [ nfreese ] | Paige Kulzer [ pkulzer ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Sprint | Fall 4 [ 227 ] | Fall 4, Fall 5 [ 227, 228 ] |
| Rank | Ranked higher |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Assignee | Paige Kulzer [ pkulzer ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Status | Post-merge Testing In Progress [ 10003 ] | Merged Needs Testing [ 10002 ] |
| Assignee | Ann Loraine [ aloraine ] |
| Assignee | Ann Loraine [ aloraine ] |
| Assignee | Paige Kulzer [ pkulzer ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Resolution | Done [ 10000 ] | |
| Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |