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  1. IGB
  2. IGBF-4224

Pull all the chromosome locations for APX for IGB viewing

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
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          Description

          GOAL: To identify all APX gene locations in SL4 genome using the GFF file.

          Search through the GFF file (SL4 version, ITAG 4.0) for each instance of ascorbate peroxidase.

          We are looking for lines that are "genes" and not exons, etc. Need to genome coordinates
          Chromosome #, start position and stop position.

          Make a summary of all of these and save to a file.

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                • Assignee:
                  abecerri Alex Becerril Cruz (Inactive)
                  Reporter:
                  robofjoy Robert Reid
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                    Updated:
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