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  1. IGB
  2. IGBF-4228

Read 2 Tomato paper and identify worthy genes mentioned therein

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
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          Description

          GOAL: To read through these 2 papers from OUR tomato group (the people on the Tuesday meetings).

          Get an overview of the research.
          Spot any genes they mention with the idea of exploring these genes in Kelsey's Unpol data to see the expression patterns.

          1. Read paper
          2. Jot down genes of interest. Either the name or even better the SolyID !!!!

          Once done, assign to other student and move this ticket to review.
          If you got assigned this ticket, move this to In Progress.
          follow instructions and then move to review. Add genes to comments below.

          The papers:
          https://pmc.ncbi.nlm.nih.gov/articles/PMC11326152/pdf/nihpp-2024.08.01.606234v1.pdf

          https://academic.oup.com/plcell/article/36/10/4511/7727725

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              ghouck Gabby Houck (Inactive) added a comment -

              Matched the SolyIDs to the best of my ability, but not all found

              • Heat shock proteins: Solyc07g040680.3
              • Genes encoding key callose synthesis enzymes:
              • Genes encoding flavonol synthesis enzymes:
              • Multiprotein bridging factor 1c MBF1c: Solyc07g062400.3
              • Respiratory Burst Oxidase Homolog H (RBOHH): Solyc08g081690.3
              • Flavonol Biosynthetic Enzyme F3H: Solyc02g036350.3
              • SPIRRIG protein: Slyc04g076510.3
              • Callose Synthase Genes (general Family)
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              ghouck Gabby Houck (Inactive) added a comment - Matched the SolyIDs to the best of my ability, but not all found Heat shock proteins: Solyc07g040680.3 Genes encoding key callose synthesis enzymes: Genes encoding flavonol synthesis enzymes: Multiprotein bridging factor 1c MBF1c: Solyc07g062400.3 Respiratory Burst Oxidase Homolog H (RBOHH): Solyc08g081690.3 Flavonol Biosynthetic Enzyme F3H: Solyc02g036350.3 SPIRRIG protein: Slyc04g076510.3 Callose Synthase Genes (general Family)
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              robofjoy Robert Reid added a comment -

              This is great, ticket done.

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              robofjoy Robert Reid added a comment - This is great, ticket done.

                People

                • Assignee:
                  abecerri Alex Becerril Cruz (Inactive)
                  Reporter:
                  robofjoy Robert Reid
                • Votes:
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                  • Created:
                    Updated:
                    Resolved: