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  1. IGB
  2. IGBF-4228

Read 2 Tomato paper and identify worthy genes mentioned therein

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
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          Description

          GOAL: To read through these 2 papers from OUR tomato group (the people on the Tuesday meetings).

          Get an overview of the research.
          Spot any genes they mention with the idea of exploring these genes in Kelsey's Unpol data to see the expression patterns.

          1. Read paper
          2. Jot down genes of interest. Either the name or even better the SolyID !!!!

          Once done, assign to other student and move this ticket to review.
          If you got assigned this ticket, move this to In Progress.
          follow instructions and then move to review. Add genes to comments below.

          The papers:
          https://pmc.ncbi.nlm.nih.gov/articles/PMC11326152/pdf/nihpp-2024.08.01.606234v1.pdf

          https://academic.oup.com/plcell/article/36/10/4511/7727725

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              robofjoy Robert Reid created issue -
              robofjoy Robert Reid made changes -
              Field Original Value New Value
              Epic Link IGBF-2993 [ 21429 ]
              robofjoy Robert Reid made changes -
              Assignee Ann Loraine [ aloraine ] Gabby Houck [ ghouck ]
              ghouck Gabby Houck (Inactive) made changes -
              Status To-Do [ 10305 ] In Progress [ 3 ]
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              ghouck Gabby Houck (Inactive) added a comment -

              Matched the SolyIDs to the best of my ability, but not all found

              • Heat shock proteins: Solyc07g040680.3
              • Genes encoding key callose synthesis enzymes:
              • Genes encoding flavonol synthesis enzymes:
              • Multiprotein bridging factor 1c MBF1c: Solyc07g062400.3
              • Respiratory Burst Oxidase Homolog H (RBOHH): Solyc08g081690.3
              • Flavonol Biosynthetic Enzyme F3H: Solyc02g036350.3
              • SPIRRIG protein: Slyc04g076510.3
              • Callose Synthase Genes (general Family)
              Show
              ghouck Gabby Houck (Inactive) added a comment - Matched the SolyIDs to the best of my ability, but not all found Heat shock proteins: Solyc07g040680.3 Genes encoding key callose synthesis enzymes: Genes encoding flavonol synthesis enzymes: Multiprotein bridging factor 1c MBF1c: Solyc07g062400.3 Respiratory Burst Oxidase Homolog H (RBOHH): Solyc08g081690.3 Flavonol Biosynthetic Enzyme F3H: Solyc02g036350.3 SPIRRIG protein: Slyc04g076510.3 Callose Synthase Genes (general Family)
              ghouck Gabby Houck (Inactive) made changes -
              Assignee Gabby Houck [ ghouck ] Alex Becerril Cruz [ abecerri ]
              nfreese Nowlan Freese made changes -
              Sprint Summer 1 [ 218 ] Summer 1, Summer 2 [ 218, 219 ]
              nfreese Nowlan Freese made changes -
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              ann.loraine Ann Loraine made changes -
              Sprint Summer 1, Summer 2 [ 218, 219 ] Summer 1, Summer 2, Summer 3 [ 218, 219, 220 ]
              ann.loraine Ann Loraine made changes -
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              abecerri Alex Becerril Cruz (Inactive) made changes -
              Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
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              robofjoy Robert Reid added a comment -

              This is great, ticket done.

              Show
              robofjoy Robert Reid added a comment - This is great, ticket done.
              robofjoy Robert Reid made changes -
              Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
              robofjoy Robert Reid made changes -
              Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
              robofjoy Robert Reid made changes -
              Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
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              Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
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              Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
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              Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
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              Resolution Done [ 10000 ]
              Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]

                People

                • Assignee:
                  abecerri Alex Becerril Cruz (Inactive)
                  Reporter:
                  robofjoy Robert Reid
                • Votes:
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                  Dates

                  • Created:
                    Updated:
                    Resolved: