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  1. IGB
  2. IGBF-4236

Generate Pathview images of interesting pathways across the conditions

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
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          Description

          Look through the GAGE results for pathways of interest (ex: sly00941 Flavonoid biosynthesis) and generate pathview images of them from 3hr and 8hr. We want to see how paths and the genes within them change over time. We should focus on pathways that are involved in dealing with heat stress, so some researching will be required.

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              bbendick Brandon Bendickson added a comment -

              Here is the Gage results so far: https://docs.google.com/spreadsheets/d/1V8bU1c1SkKg0J3pA5GHpi6NrJzf9fEta3hsWhGMBUag/edit?usp=sharing

              Gonna have Alex organize these into one coherent table.

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              bbendick Brandon Bendickson added a comment - Here is the Gage results so far: https://docs.google.com/spreadsheets/d/1V8bU1c1SkKg0J3pA5GHpi6NrJzf9fEta3hsWhGMBUag/edit?usp=sharing Gonna have Alex organize these into one coherent table.
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              bbendick Brandon Bendickson added a comment -

              Look into Glutathione Biosynthesis pathway! It is a key antioxidant!

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              bbendick Brandon Bendickson added a comment - Look into Glutathione Biosynthesis pathway! It is a key antioxidant!
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              robofjoy Robert Reid added a comment -

              This looks all good, closing ticket.

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              robofjoy Robert Reid added a comment - This looks all good, closing ticket.

                People

                • Assignee:
                  ghouck Gabby Houck (Inactive)
                  Reporter:
                  bbendick Brandon Bendickson
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                    Updated:
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