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  1. IGB
  2. IGBF-4236

Generate Pathview images of interesting pathways across the conditions

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None

          Description

          Look through the GAGE results for pathways of interest (ex: sly00941 Flavonoid biosynthesis) and generate pathview images of them from 3hr and 8hr. We want to see how paths and the genes within them change over time. We should focus on pathways that are involved in dealing with heat stress, so some researching will be required.

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              bbendick Brandon Bendickson created issue -
              bbendick Brandon Bendickson made changes -
              Field Original Value New Value
              Epic Link IGBF-2993 [ 21429 ]
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              bbendick Brandon Bendickson added a comment -

              Here is the Gage results so far: https://docs.google.com/spreadsheets/d/1V8bU1c1SkKg0J3pA5GHpi6NrJzf9fEta3hsWhGMBUag/edit?usp=sharing

              Gonna have Alex organize these into one coherent table.

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              bbendick Brandon Bendickson added a comment - Here is the Gage results so far: https://docs.google.com/spreadsheets/d/1V8bU1c1SkKg0J3pA5GHpi6NrJzf9fEta3hsWhGMBUag/edit?usp=sharing Gonna have Alex organize these into one coherent table.
              ghouck Gabby Houck (Inactive) made changes -
              Status To-Do [ 10305 ] In Progress [ 3 ]
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              bbendick Brandon Bendickson added a comment -

              Look into Glutathione Biosynthesis pathway! It is a key antioxidant!

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              bbendick Brandon Bendickson added a comment - Look into Glutathione Biosynthesis pathway! It is a key antioxidant!
              ghouck Gabby Houck (Inactive) made changes -
              Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
              nfreese Nowlan Freese made changes -
              Sprint Summer 1 [ 218 ] Summer 1, Summer 2 [ 218, 219 ]
              nfreese Nowlan Freese made changes -
              Rank Ranked higher
              bbendick Brandon Bendickson made changes -
              Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
              bbendick Brandon Bendickson made changes -
              Status First Level Review in Progress [ 10301 ] Needs 1st Level Review [ 10005 ]
              bbendick Brandon Bendickson made changes -
              Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
              bbendick Brandon Bendickson made changes -
              Status First Level Review in Progress [ 10301 ] Needs 1st Level Review [ 10005 ]
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              robofjoy Robert Reid added a comment -

              This looks all good, closing ticket.

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              robofjoy Robert Reid added a comment - This looks all good, closing ticket.
              robofjoy Robert Reid made changes -
              Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
              robofjoy Robert Reid made changes -
              Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
              robofjoy Robert Reid made changes -
              Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
              robofjoy Robert Reid made changes -
              Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
              robofjoy Robert Reid made changes -
              Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
              robofjoy Robert Reid made changes -
              Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
              robofjoy Robert Reid made changes -
              Resolution Done [ 10000 ]
              Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]

                People

                • Assignee:
                  ghouck Gabby Houck (Inactive)
                  Reporter:
                  bbendick Brandon Bendickson
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                  Dates

                  • Created:
                    Updated:
                    Resolved: