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  1. IGB
  2. IGBF-4243

Path view of various normalized tables

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
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          Description

          Something is wrong with our tpm counts, I think it is the gene lengths. Lets try making some pathview images of our deseq normalized counts and even try normalizing the counts the way they do it in the Gage documentation. Ideally this would solve our issues.

          documentation: https://bioconductor.org/packages/release/bioc/vignettes/gage/inst/doc/RNA-seqWorkflow.pdf

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                • Assignee:
                  ghouck Gabby Houck (Inactive)
                  Reporter:
                  bbendick Brandon Bendickson
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