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  1. IGB
  2. IGBF-4251

Investigate: Galaxy db key is properly set but IGB fails to fully change to the correct reference

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Blocker
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
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          Description

          To repeat:

          • Open this Galaxy history showing RNA-Seq data from a fruit fly genome that IGB supports: https://usegalaxy.eu/published/history?id=71e151c8e95fab78
          • Open IGB.
          • Click the Mona Lisa to show the Dec 2013 human genome assembly.
          • Within the Galaxy window, located dataset number 40 (bam file), click "view" > GSM_treat_paired > tiny graph image > View in IGB (this is the dm6 fruit fly genome)
          • Observe that IGB changes the window title and the Current Sequence tab but *does not* actually display the fruit fly data! Also, the "Load Sequence" button fails to work.

          For this task, find out why this does not work. Also, test previous versions of IGB to determine when and how this bug got introduced, or if it has always been a problem.

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              sjagarap saideepthi jagarapu (Inactive) added a comment -

              attn Ann Loraine

              • I tested the flow in versions 10.2.0, 10.1.0.
              • After switching to the dm6 genome, just need to zoom in and then click "Load Sequence" followed by "Load Data".
              • Without zooming, IGB does not trigger sequence or data loading, which is expected behavior due to the large size of the genomic data.
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              sjagarap saideepthi jagarapu (Inactive) added a comment - attn Ann Loraine I tested the flow in versions 10.2.0, 10.1.0. After switching to the dm6 genome, just need to zoom in and then click "Load Sequence" followed by "Load Data". Without zooming, IGB does not trigger sequence or data loading, which is expected behavior due to the large size of the genomic data.
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              ann.loraine Ann Loraine added a comment -

              I confirmed that I was unable to reproduce the bug. Moving this to DONE.

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              ann.loraine Ann Loraine added a comment - I confirmed that I was unable to reproduce the bug. Moving this to DONE.

                People

                • Assignee:
                  sjagarap saideepthi jagarapu (Inactive)
                  Reporter:
                  ann.loraine Ann Loraine
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                  • Created:
                    Updated:
                    Resolved: