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  1. IGB
  2. IGBF-4251

Investigate: Galaxy db key is properly set but IGB fails to fully change to the correct reference

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Blocker
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None

          Description

          To repeat:

          • Open this Galaxy history showing RNA-Seq data from a fruit fly genome that IGB supports: https://usegalaxy.eu/published/history?id=71e151c8e95fab78
          • Open IGB.
          • Click the Mona Lisa to show the Dec 2013 human genome assembly.
          • Within the Galaxy window, located dataset number 40 (bam file), click "view" > GSM_treat_paired > tiny graph image > View in IGB (this is the dm6 fruit fly genome)
          • Observe that IGB changes the window title and the Current Sequence tab but *does not* actually display the fruit fly data! Also, the "Load Sequence" button fails to work.

          For this task, find out why this does not work. Also, test previous versions of IGB to determine when and how this bug got introduced, or if it has always been a problem.

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              ann.loraine Ann Loraine created issue -
              ann.loraine Ann Loraine made changes -
              Field Original Value New Value
              Epic Link IGBF-1765 [ 17855 ]
              ann.loraine Ann Loraine made changes -
              Assignee Ann Loraine [ aloraine ]
              pkulzer Paige Kulzer made changes -
              Assignee Paige Kulzer [ pkulzer ]
              pkulzer Paige Kulzer made changes -
              Assignee Paige Kulzer [ pkulzer ] saideepthi jagarapu [ sjagarap ]
              sjagarap saideepthi jagarapu (Inactive) made changes -
              Status To-Do [ 10305 ] In Progress [ 3 ]
              ann.loraine Ann Loraine made changes -
              Sprint Summer 3 [ 220 ] Summer 3, Summer 4 [ 220, 221 ]
              ann.loraine Ann Loraine made changes -
              Rank Ranked higher
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              sjagarap saideepthi jagarapu (Inactive) added a comment -

              attn Ann Loraine

              • I tested the flow in versions 10.2.0, 10.1.0.
              • After switching to the dm6 genome, just need to zoom in and then click "Load Sequence" followed by "Load Data".
              • Without zooming, IGB does not trigger sequence or data loading, which is expected behavior due to the large size of the genomic data.
              Show
              sjagarap saideepthi jagarapu (Inactive) added a comment - attn Ann Loraine I tested the flow in versions 10.2.0, 10.1.0. After switching to the dm6 genome, just need to zoom in and then click "Load Sequence" followed by "Load Data". Without zooming, IGB does not trigger sequence or data loading, which is expected behavior due to the large size of the genomic data.
              sjagarap saideepthi jagarapu (Inactive) made changes -
              Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
              sjagarap saideepthi jagarapu (Inactive) made changes -
              Assignee saideepthi jagarapu [ sjagarap ]
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              ann.loraine Ann Loraine added a comment -

              I confirmed that I was unable to reproduce the bug. Moving this to DONE.

              Show
              ann.loraine Ann Loraine added a comment - I confirmed that I was unable to reproduce the bug. Moving this to DONE.
              ann.loraine Ann Loraine made changes -
              Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
              ann.loraine Ann Loraine made changes -
              Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
              ann.loraine Ann Loraine made changes -
              Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
              ann.loraine Ann Loraine made changes -
              Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
              ann.loraine Ann Loraine made changes -
              Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
              ann.loraine Ann Loraine made changes -
              Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
              ann.loraine Ann Loraine made changes -
              Resolution Done [ 10000 ]
              Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]
              ann.loraine Ann Loraine made changes -
              Assignee saideepthi jagarapu [ sjagarap ]

                People

                • Assignee:
                  sjagarap saideepthi jagarapu (Inactive)
                  Reporter:
                  ann.loraine Ann Loraine
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                  Dates

                  • Created:
                    Updated:
                    Resolved: