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  1. IGB
  2. IGBF-4326

Update hub-facade dependencies

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
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            uchinta Udaya Chinta (Inactive) added a comment -

            Tested the changes. Everything is working as expected.

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            uchinta Udaya Chinta (Inactive) added a comment - Tested the changes. Everything is working as expected.
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            ann.loraine Ann Loraine added a comment -

            PR is merged.

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            ann.loraine Ann Loraine added a comment - PR is merged.
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            sjagarap saideepthi jagarapu added a comment -

            PR https://bitbucket.org/lorainelab/hub-facade/pull-requests/53

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            sjagarap saideepthi jagarapu added a comment - PR https://bitbucket.org/lorainelab/hub-facade/pull-requests/53
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            sjagarap saideepthi jagarapu added a comment - - edited

            Update Ann Loraine Nowlan Freese
            I made changes to setup_vars.yml to make use of my repo fork and branch.
            Updated setup_vars.yml looks like this

            ---
### Variables needed to run setup.yml ###

#
# Hub facade code repository and branch to deploy
#
repo: https://bitbucket.org/lorainelab-deepthi/hub-facade.git
branch: IGBF-4326

#
# Certificates for supporting https. Place in files directory.
#
#ssl_cert_file:
#ssl_cert_key_file:
#ssl_chain_file:

ssl_cert_file: 2025.star.bioviz.org.crt
ssl_cert_key_file: 2025.star.bioviz.org.key
ssl_chain_file: 2025.star.bioviz.org.ca-bundle

#
# Web apps deploy directory
#
app_dir: /var/www/vhosts
...

            I have tested the dev deployment with these changes by deploying udaya's trackhub changes as I couldn't see any visible UI change with 4326 dependency upgrade to figure out if the branch is deployed to dev or not.

            Now, I have test new changes in dev after deploying IGBF-4326 changes, and everything works as expected.

            Show
            sjagarap saideepthi jagarapu added a comment - - edited Update Ann Loraine Nowlan Freese I made changes to setup_vars.yml to make use of my repo fork and branch. Updated setup_vars.yml looks like this --- ### Variables needed to run setup.yml ### # # Hub facade code repository and branch to deploy # repo: https: //bitbucket.org/lorainelab-deepthi/hub-facade.git branch: IGBF-4326 # # Certificates for supporting https. Place in files directory. # #ssl_cert_file: #ssl_cert_key_file: #ssl_chain_file: ssl_cert_file: 2025.star.bioviz.org.crt ssl_cert_key_file: 2025.star.bioviz.org.key ssl_chain_file: 2025.star.bioviz.org.ca-bundle # # Web apps deploy directory # app_dir: / var /www/vhosts ... I have tested the dev deployment with these changes by deploying udaya's trackhub changes as I couldn't see any visible UI change with 4326 dependency upgrade to figure out if the branch is deployed to dev or not. Now, I have test new changes in dev after deploying IGBF-4326 changes, and everything works as expected.
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            sjagarap saideepthi jagarapu added a comment - - edited

            Ann Loraine I have doubt here, this is the inventory.ini file

            [hub_facade_hosts]
# this is what we're using for the production site (commented out)
# translate2 ansible_host=3.209.223.181 domain=translate.bioviz.org secret_key=dkasdkhjwns igb_repository=https://bitbucket.org/lorainelab/integrated-genome-browser/ igb_branch=main quickload_contents_txt=https://data.bioviz.org/quickload/contents.txt stack=Prod

# this is your test / development host target (for Deepthi)
dev2025 ansible_host=34.225.101.234 domain=dev2025.bioviz.org secret_key=dldlalkdselcekd igb_repository=https://bitbucket.org/lorainelab-deepthi/integrated-genome-browser/ igb_branch=main quickload_contents_txt=https://data.bioviz.org/quickload/contents.txt stack=Develop

[hub_facade_hosts:vars]
ansible_ssh_common_args="-o StrictHostKeyChecking=no"
ansible_ssh_user=ubuntu

            Here igb_branch and repo is related to igb not hub-facade
            So, do you think i should update the igb_branch to IGBF-4326 because this is developed branch in hub-facade not igb.

            Show
            sjagarap saideepthi jagarapu added a comment - - edited Ann Loraine I have doubt here, this is the inventory.ini file [hub_facade_hosts] # this is what we're using for the production site (commented out) # translate2 ansible_host=3.209.223.181 domain=translate.bioviz.org secret_key=dkasdkhjwns igb_repository=https: //bitbucket.org/lorainelab/integrated-genome-browser/ igb_branch=main quickload_contents_txt=https://data.bioviz.org/quickload/contents.txt stack=Prod # this is your test / development host target ( for Deepthi) dev2025 ansible_host=34.225.101.234 domain=dev2025.bioviz.org secret_key=dldlalkdselcekd igb_repository=https: //bitbucket.org/lorainelab-deepthi/integrated-genome-browser/ igb_branch=main quickload_contents_txt=https://data.bioviz.org/quickload/contents.txt stack=Develop [hub_facade_hosts:vars] ansible_ssh_common_args= "-o StrictHostKeyChecking=no" ansible_ssh_user=ubuntu Here igb_branch and repo is related to igb not hub-facade So, do you think i should update the igb_branch to IGBF-4326 because this is developed branch in hub-facade not igb.
            5 older comments

              People

              • Assignee:
                sjagarap saideepthi jagarapu
                Reporter:
                ann.loraine Ann Loraine
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                  Updated:
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