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  1. IGB
  2. IGBF-4341

Create a scRNA-Seq tutorial

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None
        • Story Points:
          5
        • Epic Link:
        • Sprint:
          Fall 5, Fall 6, Fall 7, Fall 8, Fall 9

          Description

          Situation: Dr. Loraine's students are working through an assignment that requires them to output a Seurat object. From there, Dr. Loraine would like for there to be a tutorial for her students to follow such that they can view that data in IGB.

          Task: Create a tutorial that can walk a student through the process of visualizing Seurat data in IGB. This will include describing which file formats can be added to IGB, what is contained in the data they generated, and what they'll be seeing in IGB.

          Link to working draft in Google Drive: https://docs.google.com/document/d/1bQrT4iKJERRAs5GAUvCnPWVrp4D-RiLzRlXt_BKtSuA/edit?usp=sharing

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              relates to

              Task - A task that needs to be done. IGBF-4340 Create python scripts to work with 10xGenomics files

              • Major - Major loss of function.
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                  • Assignee:
                    pkulzer Paige Kulzer (Inactive)
                    Reporter:
                    pkulzer Paige Kulzer (Inactive)
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                    • Created:
                      Updated:
                      Resolved: