Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:2
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Epic Link:
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Sprint:Fall 5, Fall 6
Description
GOAL: Taking some ChatGPT output code and running it on Kelsey pol data.
This will run 2 tools. Rob only got 1/3 of the way through.
Data and the script can be found on Google drive here:
https://drive.google.com/drive/folders/1yFx95SDcreHpBeznrnR2L_n4vfbrDmlJ?usp=drive_link
Data is :
1. a metafile (which is not confirmed to be in correct format but might be)
2. Counts table
And there is the r script in the folder as well.
rnaseq_timecourse_clustering_pipeline.R
Just try to get it to run and then we can scheme if there is any further value in these tools.
Attachments
Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link | IGBF-2993 [ 21429 ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Sprint | Fall 5 [ 228 ] | Fall 5, Fall 6 [ 228, 229 ] |
| Rank | Ranked higher |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Resolution | Done [ 10000 ] | |
| Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |