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  1. IGB
  2. IGBF-4346

Run and Compare Bowtie and BWA-mem

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
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          Description

          Run and compare alignment results of Bowtie and BWA-mem on Dr. Chakrabarti's new dartseq data as the current alignments are not very good.

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              bbendick Brandon Bendickson added a comment -

              Successfully ran both BWA-Mem and Bowtie2, seems like bwa is the better method. Summarized results into this sheet

              Results for BWA: /projects/chakrabartilab/fnb0/plasmodium/dart2/alignments/bwa-mem/sams_and_bams

              Results for Bowtie: /projects/chakrabartilab/fnb0/plasmodium/dart2/alignments/bowtie2/sams_and_bams

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              bbendick Brandon Bendickson added a comment - Successfully ran both BWA-Mem and Bowtie2, seems like bwa is the better method. Summarized results into this sheet Results for BWA: /projects/chakrabartilab/fnb0/plasmodium/dart2/alignments/bwa-mem/sams_and_bams Results for Bowtie: /projects/chakrabartilab/fnb0/plasmodium/dart2/alignments/bowtie2/sams_and_bams

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                • Assignee:
                  bbendick Brandon Bendickson
                  Reporter:
                  bbendick Brandon Bendickson
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                    Updated:
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