Tested locally on Mac using Paige's branch.

Able to see the new icons. No errors in logs. Note that the icons have a transparent background so could be useful for a future light/dark mode.

I have changed the scope of the ticket such that the purpose of this ticket was to explore using updated transparent icons. As this has been completed I am closing the ticket.

I downloaded the jar file and ran it, but the version that ran did not seem to match your branch.

Info from the "About IGB" screen:

The current Branch Name : main
The build date/time : 07-18-2025 14:55:48
The latest commit id : 272d79449b978f8ded69e40d0fc2aa572f7df0e4

To test / review using igb_exe.jar, here's what I did:

Changed into my local IGB clone - the top level directory.
Ran "mvn clean" to remove any older class files and compiled jar files.
Copied the downloaded jar file to the current location.
Ran shell script ./run_igb.sh.
This should have ran the the newly downloaded jarfile.

Here's a link to the IGB executable from this branch: https://drive.google.com/file/d/1mRLixs_WJU7CeRxqdHNMQV1ePmwm8YkE/view?usp=drive_link

Thanks for identify and investigating the Bitbucket pipeline issue in the preceding comment Paige Kulzer.

The bitbucket pipeline service is basically a container-running service. When a developer runs an IGB pipeline, the bitbucket infrastructure creates a new container from a docker image we create. If developers can no longer easily run this "build pipeline" using their bitbucket accounts, we should develop a workflow that "core team" developers can do on their own machine to build installers.

In the meantime, can you provide a link to the IGB executable from the branch? I think the file name is igb_exe.jar or something similar. You could stash it on google drive and provide a link here. You might be able manually upload it to the Downloads section in your bitbucket account. There are a probably a lot of options. Don't attach here because - too big.

Ann Loraine, I am currently unable to build installers. I followed the instructions on Canvas for setting up BitBucket pipelines (https://canvas.instructure.com/courses/1164217/pages/set-up-bitbucket-pipelines?module_item_id=14594728) and I'm able to run the actual pipelines, but nothing is being output to my Downloads folder.

BitBucket recently decided to forego App Passwords in favor of API Tokens, so I wonder if that has something to do with the issue. Dr. Freese and I were troubleshooting yesterday with API Tokens but they are causing the pipeline to fail. We've tried saving the value of the BB_AUTH_STRING variable as the token, our username and the token, our email and the token, and the token name and the token (all colon-separated). We've also used API Tokens with all scopes enabled, so that's not contributing to the issue.

Here's the error I'm getting when the pipeline fails: [ERROR] Failed to execute goal org.sonatype.install4j:install4j-maven-plugin:1.1.1:compile (compile-installers) on project main: null returned: 1 -> [Help 1]

Would you be able to build installers for your branch so that I can install the version on my computer to try it out?

I'm not sure if it's possible anymore to do that, however.

I can build installers within the "lorainelab" (workspace) repositories, but I'm not sure if regular users can do it.

Re-assigning to Paige Kulzer to take a look.

I've created a mock-up of what IGB might look like with updated toolbar icons. I've included images on this ticket of the main view as well as several of the drop-down menus with these updated icons included.

If you'd like to view my changes, here is my branch: https://bitbucket.org/pkulzer-lorainelab/integrated-genome-browser/branch/IGBF-4351

For review, let me know your thoughts on these design changes. Also, if there are any icons that do not align with the action they are representing, I will need to know so that I can change those.