Details
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Type:
Bug
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:2
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Epic Link:
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Sprint:Fall 7, Fall 8, Fall 9, Spring 1
Description
Situation: Right-clicking on a file should open the metadata panel. Instead I am seeing the error "Sorry! We could not to retrieve the metadata for this file. Please try again after some time."
Task: Fix the right-click metadata panel.
Attachments
Activity
I am seeing the following error in the Chrome web console:
rightPanel.js:324 Uncaught TypeError: Cannot convert undefined or null to object at Object.keys (<anonymous>) at metaDataUI (rightPanel.js:324:25) at Object.success (rightPanel.js:287:11) at c (jquery.min.js:2:27742) at Object.fireWith [as resolveWith] (jquery.min.js:2:28487) at l (jquery.min.js:2:78789) at XMLHttpRequest.<anonymous> (jquery.min.js:2:81117)
Testing the metadata API response from Terrain. I used the same metadata endpoint in our Terrain documentation. As far as I can tell the response looks good as it does not appear to differ from our documentation.
Request:
curl -L -X GET 'https://de.cyverse.org/terrain/secured/filesystem/4a2e5e78-f5b6-11e9-8c9b-90e2ba675364/metadata' \ -H 'Content-Type: application/json' \ -H 'Authorization: Bearer $TOKEN' \ -d '{ "paths": [ "/iplant/home/nowlanf/SmokeTesting/H_sapiens_Dec_2013/Bam-HomoSapien.bam" ] }'
Response:
{
"irods-avus": [],
"path": "/iplant/home/nowlanf/SmokeTesting/H_sapiens_Dec_2013/Bam-HomoSapien.bam",
"avus": [
{
"modified_on": 1596825068434,
"unit": "integratedGenomeBrowser",
"value": "#f2002b",
"target_id": "4a2e5e78-f5b6-11e9-8c9b-90e2ba675364",
"created_on": 1573077136683,
"id": "b2e9dff8-00df-11ea-91cb-008cfa5ae621",
"avus": [],
"modified_by": "nowlanf",
"created_by": "nowlanf",
"attr": "foreground"
},
{
"modified_on": 1634258210356,
"unit": "integratedGenomeBrowser",
"value": "",
"target_id": "4a2e5e78-f5b6-11e9-8c9b-90e2ba675364",
"created_on": 1587666723466,
"id": "ba53e44c-8590-11ea-ae87-008cfa5ae621",
"avus": [],
"modified_by": "nowlanf",
"created_by": "nowlanf",
"attr": "trackName"
},
{
"modified_on": 1596825068434,
"unit": "integratedGenomeBrowser",
"value": "This data set is from an RNA-Seq experiment. It was sequenced on an Illumina platform and aligned to the most recent human genome version.\n\nSecond line.",
"target_id": "4a2e5e78-f5b6-11e9-8c9b-90e2ba675364",
"created_on": 1573077136683,
"id": "b2eaafbe-00df-11ea-91cb-008cfa5ae621",
"avus": [],
"modified_by": "nowlanf",
"created_by": "nowlanf",
"attr": "Comments"
},
{
"modified_on": 1663684988175,
"unit": "integratedGenomeBrowser",
"value": "#fffafa",
"target_id": "4a2e5e78-f5b6-11e9-8c9b-90e2ba675364",
"created_on": 1573077136683,
"id": "b2ebf02c-00df-11ea-91cb-008cfa5ae621",
"avus": [],
"modified_by": "nowlanf",
"created_by": "nowlanf",
"attr": "background"
},
{
"modified_on": 1663684988175,
"unit": "integratedGenomeBrowser",
"value": "Homo sapiens;H_sapiens_Dec_2013",
"target_id": "4a2e5e78-f5b6-11e9-8c9b-90e2ba675364",
"created_on": 1573077136683,
"id": "b2e900d8-00df-11ea-91cb-008cfa5ae621",
"avus": [],
"modified_by": "nowlanf",
"created_by": "nowlanf",
"attr": "Genome"
}
]
}
Retesting on January 14, 2026
Karthik tested today and was unable to reproduce the issue. I tried the same request from December where I was seeing the issue, and the response is identical. Unclear what was causing the issue, but it is no longer reproducible.
Closing ticket.
Request on January 14, 2026:
Response on January 14, 2026:
{ "irods-avus": [], "path": "/iplant/home/nowlanf/SmokeTesting/H_sapiens_Dec_2013/Bam-HomoSapien.bam", "avus": [ { "modified_on": 1596825068434, "unit": "integratedGenomeBrowser", "value": "#f2002b", "target_id": "4a2e5e78-f5b6-11e9-8c9b-90e2ba675364", "created_on": 1573077136683, "id": "b2e9dff8-00df-11ea-91cb-008cfa5ae621", "avus": [], "modified_by": "nowlanf", "created_by": "nowlanf", "attr": "foreground" }, { "modified_on": 1634258210356, "unit": "integratedGenomeBrowser", "value": "", "target_id": "4a2e5e78-f5b6-11e9-8c9b-90e2ba675364", "created_on": 1587666723466, "id": "ba53e44c-8590-11ea-ae87-008cfa5ae621", "avus": [], "modified_by": "nowlanf", "created_by": "nowlanf", "attr": "trackName" }, { "modified_on": 1596825068434, "unit": "integratedGenomeBrowser", "value": "This data set is from an RNA-Seq experiment. It was sequenced on an Illumina platform and aligned to the most recent human genome version.\n\nSecond line.", "target_id": "4a2e5e78-f5b6-11e9-8c9b-90e2ba675364", "created_on": 1573077136683, "id": "b2eaafbe-00df-11ea-91cb-008cfa5ae621", "avus": [], "modified_by": "nowlanf", "created_by": "nowlanf", "attr": "Comments" }, { "modified_on": 1663684988175, "unit": "integratedGenomeBrowser", "value": "#fffafa", "target_id": "4a2e5e78-f5b6-11e9-8c9b-90e2ba675364", "created_on": 1573077136683, "id": "b2ebf02c-00df-11ea-91cb-008cfa5ae621", "avus": [], "modified_by": "nowlanf", "created_by": "nowlanf", "attr": "background" }, { "modified_on": 1663684988175, "unit": "integratedGenomeBrowser", "value": "Homo sapiens;H_sapiens_Dec_2013", "target_id": "4a2e5e78-f5b6-11e9-8c9b-90e2ba675364", "created_on": 1573077136683, "id": "b2e900d8-00df-11ea-91cb-008cfa5ae621", "avus": [], "modified_by": "nowlanf", "created_by": "nowlanf", "attr": "Genome" } ] }