[IGBF-4359] Metadata broken in BioViz Connect - JIRA UNCC

Details

Type: Bug
Status: Closed (View Workflow)
Priority: Major
Resolution: Done
Affects Version/s: None
Fix Version/s: None
Labels:
None

Story Points:
2
Epic Link:
Maintain BioViz Connect
Sprint:
Fall 7, Fall 8, Fall 9, Spring 1

Description

Situation: Right-clicking on a file should open the metadata panel. Instead I am seeing the error "Sorry! We could not to retrieve the metadata for this file. Please try again after some time."

Task: Fix the right-click metadata panel.

Attachments

Activity

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Nowlan Freese created issue - 19/Nov/25 10:16 AM

Nowlan Freese made changes - 19/Nov/25 10:16 AM

Field	Original Value	New Value
Epic Link		IGBF-2376 [ 18533 ]

Nowlan Freese made changes - 19/Nov/25 10:38 AM

Link

This issue relates to IGBF-4270 [ IGBF-4270 ]

Ann Loraine made changes - 24/Nov/25 9:21 AM

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Fall 7, Fall 8 [ 230, 231 ]

Ann Loraine made changes - 24/Nov/25 9:21 AM

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Karthik Raveendran made changes - 26/Nov/25 9:48 AM

Status

To-Do [ 10305 ]

In Progress [ 3 ]

Karthik Raveendran made changes - 26/Nov/25 10:02 AM

Status

In Progress [ 3 ]

To-Do [ 10305 ]

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Nowlan Freese added a comment - 04/Dec/25 3:04 PM - edited

Testing the metadata API response from Terrain. I used the same metadata endpoint in our Terrain documentation. As far as I can tell the response looks good as it does not appear to differ from our documentation.

Request:

curl -L -X GET 'https://de.cyverse.org/terrain/secured/filesystem/4a2e5e78-f5b6-11e9-8c9b-90e2ba675364/metadata' \
-H 'Content-Type: application/json' \
-H 'Authorization: Bearer $TOKEN' \
-d '{
    "paths": [
         "/iplant/home/nowlanf/SmokeTesting/H_sapiens_Dec_2013/Bam-HomoSapien.bam"
    ]
}'

Response:

{
    "irods-avus": [],
    "path": "/iplant/home/nowlanf/SmokeTesting/H_sapiens_Dec_2013/Bam-HomoSapien.bam",
    "avus": [
        {
            "modified_on": 1596825068434,
            "unit": "integratedGenomeBrowser",
            "value": "#f2002b",
            "target_id": "4a2e5e78-f5b6-11e9-8c9b-90e2ba675364",
            "created_on": 1573077136683,
            "id": "b2e9dff8-00df-11ea-91cb-008cfa5ae621",
            "avus": [],
            "modified_by": "nowlanf",
            "created_by": "nowlanf",
            "attr": "foreground"
        },
        {
            "modified_on": 1634258210356,
            "unit": "integratedGenomeBrowser",
            "value": "",
            "target_id": "4a2e5e78-f5b6-11e9-8c9b-90e2ba675364",
            "created_on": 1587666723466,
            "id": "ba53e44c-8590-11ea-ae87-008cfa5ae621",
            "avus": [],
            "modified_by": "nowlanf",
            "created_by": "nowlanf",
            "attr": "trackName"
        },
        {
            "modified_on": 1596825068434,
            "unit": "integratedGenomeBrowser",
            "value": "This data set is from an RNA-Seq experiment. It was sequenced on an Illumina platform and aligned to the most recent human genome version.\n\nSecond line.",
            "target_id": "4a2e5e78-f5b6-11e9-8c9b-90e2ba675364",
            "created_on": 1573077136683,
            "id": "b2eaafbe-00df-11ea-91cb-008cfa5ae621",
            "avus": [],
            "modified_by": "nowlanf",
            "created_by": "nowlanf",
            "attr": "Comments"
        },
        {
            "modified_on": 1663684988175,
            "unit": "integratedGenomeBrowser",
            "value": "#fffafa",
            "target_id": "4a2e5e78-f5b6-11e9-8c9b-90e2ba675364",
            "created_on": 1573077136683,
            "id": "b2ebf02c-00df-11ea-91cb-008cfa5ae621",
            "avus": [],
            "modified_by": "nowlanf",
            "created_by": "nowlanf",
            "attr": "background"
        },
        {
            "modified_on": 1663684988175,
            "unit": "integratedGenomeBrowser",
            "value": "Homo sapiens;H_sapiens_Dec_2013",
            "target_id": "4a2e5e78-f5b6-11e9-8c9b-90e2ba675364",
            "created_on": 1573077136683,
            "id": "b2e900d8-00df-11ea-91cb-008cfa5ae621",
            "avus": [],
            "modified_by": "nowlanf",
            "created_by": "nowlanf",
            "attr": "Genome"
        }
    ]
}

Show

Nowlan Freese added a comment - 04/Dec/25 3:04 PM - edited Testing the metadata API response from Terrain. I used the same metadata endpoint in our Terrain documentation . As far as I can tell the response looks good as it does not appear to differ from our documentation. Request: curl -L -X GET 'https: //de.cyverse.org/terrain/secured/filesystem/4a2e5e78-f5b6-11e9-8c9b-90e2ba675364/metadata' \ -H 'Content-Type: application/json' \ -H 'Authorization: Bearer $TOKEN' \ -d '{ "paths" : [ "/iplant/home/nowlanf/SmokeTesting/H_sapiens_Dec_2013/Bam-HomoSapien.bam" ] }' Response: { "irods-avus" : [], "path" : "/iplant/home/nowlanf/SmokeTesting/H_sapiens_Dec_2013/Bam-HomoSapien.bam" , "avus" : [ { "modified_on" : 1596825068434, "unit" : "integratedGenomeBrowser" , "value" : "#f2002b" , "target_id" : "4a2e5e78-f5b6-11e9-8c9b-90e2ba675364" , "created_on" : 1573077136683, "id" : "b2e9dff8-00df-11ea-91cb-008cfa5ae621" , "avus" : [], "modified_by" : "nowlanf" , "created_by" : "nowlanf" , "attr" : "foreground" }, { "modified_on" : 1634258210356, "unit" : "integratedGenomeBrowser" , "value" : "", "target_id" : "4a2e5e78-f5b6-11e9-8c9b-90e2ba675364" , "created_on" : 1587666723466, "id" : "ba53e44c-8590-11ea-ae87-008cfa5ae621" , "avus" : [], "modified_by" : "nowlanf" , "created_by" : "nowlanf" , "attr" : "trackName" }, { "modified_on" : 1596825068434, "unit" : "integratedGenomeBrowser" , "value" : "This data set is from an RNA-Seq experiment. It was sequenced on an Illumina platform and aligned to the most recent human genome version.\n\nSecond line." , "target_id" : "4a2e5e78-f5b6-11e9-8c9b-90e2ba675364" , "created_on" : 1573077136683, "id" : "b2eaafbe-00df-11ea-91cb-008cfa5ae621" , "avus" : [], "modified_by" : "nowlanf" , "created_by" : "nowlanf" , "attr" : "Comments" }, { "modified_on" : 1663684988175, "unit" : "integratedGenomeBrowser" , "value" : "#fffafa" , "target_id" : "4a2e5e78-f5b6-11e9-8c9b-90e2ba675364" , "created_on" : 1573077136683, "id" : "b2ebf02c-00df-11ea-91cb-008cfa5ae621" , "avus" : [], "modified_by" : "nowlanf" , "created_by" : "nowlanf" , "attr" : "background" }, { "modified_on" : 1663684988175, "unit" : "integratedGenomeBrowser" , "value" : "Homo sapiens;H_sapiens_Dec_2013" , "target_id" : "4a2e5e78-f5b6-11e9-8c9b-90e2ba675364" , "created_on" : 1573077136683, "id" : "b2e900d8-00df-11ea-91cb-008cfa5ae621" , "avus" : [], "modified_by" : "nowlanf" , "created_by" : "nowlanf" , "attr" : "Genome" } ] }

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Nowlan Freese added a comment - 04/Dec/25 3:05 PM

I am seeing the following error in the Chrome web console:

rightPanel.js:324 Uncaught TypeError: Cannot convert undefined or null to object
    at Object.keys (<anonymous>)
    at metaDataUI (rightPanel.js:324:25)
    at Object.success (rightPanel.js:287:11)
    at c (jquery.min.js:2:27742)
    at Object.fireWith [as resolveWith] (jquery.min.js:2:28487)
    at l (jquery.min.js:2:78789)
    at XMLHttpRequest.<anonymous> (jquery.min.js:2:81117)

Show

Nowlan Freese added a comment - 04/Dec/25 3:05 PM I am seeing the following error in the Chrome web console: rightPanel.js:324 Uncaught TypeError: Cannot convert undefined or null to object at Object .keys (<anonymous>) at metaDataUI (rightPanel.js:324:25) at Object .success (rightPanel.js:287:11) at c (jquery.min.js:2:27742) at Object .fireWith [as resolveWith] (jquery.min.js:2:28487) at l (jquery.min.js:2:78789) at XMLHttpRequest.<anonymous> (jquery.min.js:2:81117)

Ann Loraine made changes - 08/Dec/25 10:05 AM

Sprint

Fall 7, Fall 8 [ 230, 231 ]

Fall 7, Fall 8, Fall 9 [ 230, 231, 232 ]

Ann Loraine made changes - 08/Dec/25 10:05 AM

Rank

Ranked higher

Ann Loraine made changes - 21/Dec/25 12:56 PM

Sprint

Fall 7, Fall 8, Fall 9 [ 230, 231, 232 ]

Fall 7, Fall 8, Fall 9, Spring 1 [ 230, 231, 232, 233 ]

Ann Loraine made changes - 21/Dec/25 12:56 PM

Rank

Ranked higher

Karthik Raveendran made changes - 14/Jan/26 11:10 AM

Status

To-Do [ 10305 ]

In Progress [ 3 ]

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Nowlan Freese added a comment - 14/Jan/26 12:03 PM - edited

Retesting on January 14, 2026

Karthik tested today and was unable to reproduce the issue. I tried the same request from December where I was seeing the issue, and the response is identical. Unclear what was causing the issue, but it is no longer reproducible.

Closing ticket.

Request on January 14, 2026:

curl -L -X GET 'https://de.cyverse.org/terrain/secured/filesystem/4a2e5e78-f5b6-11e9-8c9b-90e2ba675364/metadata' \
-H 'Content-Type: application/json' \
-H 'Authorization: Bearer $TOKEN' \
-d '{
    "paths": [
         "/iplant/home/nowlanf/SmokeTesting/H_sapiens_Dec_2013/Bam-HomoSapien.bam"
    ]
}'

Response on January 14, 2026:

{
    "irods-avus": [],
    "path": "/iplant/home/nowlanf/SmokeTesting/H_sapiens_Dec_2013/Bam-HomoSapien.bam",
    "avus": [
        {
            "modified_on": 1596825068434,
            "unit": "integratedGenomeBrowser",
            "value": "#f2002b",
            "target_id": "4a2e5e78-f5b6-11e9-8c9b-90e2ba675364",
            "created_on": 1573077136683,
            "id": "b2e9dff8-00df-11ea-91cb-008cfa5ae621",
            "avus": [],
            "modified_by": "nowlanf",
            "created_by": "nowlanf",
            "attr": "foreground"
        },
        {
            "modified_on": 1634258210356,
            "unit": "integratedGenomeBrowser",
            "value": "",
            "target_id": "4a2e5e78-f5b6-11e9-8c9b-90e2ba675364",
            "created_on": 1587666723466,
            "id": "ba53e44c-8590-11ea-ae87-008cfa5ae621",
            "avus": [],
            "modified_by": "nowlanf",
            "created_by": "nowlanf",
            "attr": "trackName"
        },
        {
            "modified_on": 1596825068434,
            "unit": "integratedGenomeBrowser",
            "value": "This data set is from an RNA-Seq experiment. It was sequenced on an Illumina platform and aligned to the most recent human genome version.\n\nSecond line.",
            "target_id": "4a2e5e78-f5b6-11e9-8c9b-90e2ba675364",
            "created_on": 1573077136683,
            "id": "b2eaafbe-00df-11ea-91cb-008cfa5ae621",
            "avus": [],
            "modified_by": "nowlanf",
            "created_by": "nowlanf",
            "attr": "Comments"
        },
        {
            "modified_on": 1663684988175,
            "unit": "integratedGenomeBrowser",
            "value": "#fffafa",
            "target_id": "4a2e5e78-f5b6-11e9-8c9b-90e2ba675364",
            "created_on": 1573077136683,
            "id": "b2ebf02c-00df-11ea-91cb-008cfa5ae621",
            "avus": [],
            "modified_by": "nowlanf",
            "created_by": "nowlanf",
            "attr": "background"
        },
        {
            "modified_on": 1663684988175,
            "unit": "integratedGenomeBrowser",
            "value": "Homo sapiens;H_sapiens_Dec_2013",
            "target_id": "4a2e5e78-f5b6-11e9-8c9b-90e2ba675364",
            "created_on": 1573077136683,
            "id": "b2e900d8-00df-11ea-91cb-008cfa5ae621",
            "avus": [],
            "modified_by": "nowlanf",
            "created_by": "nowlanf",
            "attr": "Genome"
        }
    ]
}

Show

Nowlan Freese added a comment - 14/Jan/26 12:03 PM - edited Retesting on January 14, 2026 Karthik tested today and was unable to reproduce the issue. I tried the same request from December where I was seeing the issue, and the response is identical. Unclear what was causing the issue, but it is no longer reproducible. Closing ticket. Request on January 14, 2026: curl -L -X GET 'https: //de.cyverse.org/terrain/secured/filesystem/4a2e5e78-f5b6-11e9-8c9b-90e2ba675364/metadata' \ -H 'Content-Type: application/json' \ -H 'Authorization: Bearer $TOKEN' \ -d '{ "paths" : [ "/iplant/home/nowlanf/SmokeTesting/H_sapiens_Dec_2013/Bam-HomoSapien.bam" ] }' Response on January 14, 2026: { "irods-avus" : [], "path" : "/iplant/home/nowlanf/SmokeTesting/H_sapiens_Dec_2013/Bam-HomoSapien.bam" , "avus" : [ { "modified_on" : 1596825068434, "unit" : "integratedGenomeBrowser" , "value" : "#f2002b" , "target_id" : "4a2e5e78-f5b6-11e9-8c9b-90e2ba675364" , "created_on" : 1573077136683, "id" : "b2e9dff8-00df-11ea-91cb-008cfa5ae621" , "avus" : [], "modified_by" : "nowlanf" , "created_by" : "nowlanf" , "attr" : "foreground" }, { "modified_on" : 1634258210356, "unit" : "integratedGenomeBrowser" , "value" : "", "target_id" : "4a2e5e78-f5b6-11e9-8c9b-90e2ba675364" , "created_on" : 1587666723466, "id" : "ba53e44c-8590-11ea-ae87-008cfa5ae621" , "avus" : [], "modified_by" : "nowlanf" , "created_by" : "nowlanf" , "attr" : "trackName" }, { "modified_on" : 1596825068434, "unit" : "integratedGenomeBrowser" , "value" : "This data set is from an RNA-Seq experiment. It was sequenced on an Illumina platform and aligned to the most recent human genome version.\n\nSecond line." , "target_id" : "4a2e5e78-f5b6-11e9-8c9b-90e2ba675364" , "created_on" : 1573077136683, "id" : "b2eaafbe-00df-11ea-91cb-008cfa5ae621" , "avus" : [], "modified_by" : "nowlanf" , "created_by" : "nowlanf" , "attr" : "Comments" }, { "modified_on" : 1663684988175, "unit" : "integratedGenomeBrowser" , "value" : "#fffafa" , "target_id" : "4a2e5e78-f5b6-11e9-8c9b-90e2ba675364" , "created_on" : 1573077136683, "id" : "b2ebf02c-00df-11ea-91cb-008cfa5ae621" , "avus" : [], "modified_by" : "nowlanf" , "created_by" : "nowlanf" , "attr" : "background" }, { "modified_on" : 1663684988175, "unit" : "integratedGenomeBrowser" , "value" : "Homo sapiens;H_sapiens_Dec_2013" , "target_id" : "4a2e5e78-f5b6-11e9-8c9b-90e2ba675364" , "created_on" : 1573077136683, "id" : "b2e900d8-00df-11ea-91cb-008cfa5ae621" , "avus" : [], "modified_by" : "nowlanf" , "created_by" : "nowlanf" , "attr" : "Genome" } ] }