Uploaded image for project: 'IGB'
  1. IGB
  2. IGBF-4373

Investigate copied bam track cannot use find junctions

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None

          Description

          Situation: When copying a BAM track the copied track is missing several Track Operations options, including Find Junctions.

          Task: Investigate why Track Operations > Find Junctions is missing from a copied BAM track.

          To reproduce:

          1. Open the hg38 human genome (H_sapiens_Dec_2013)
          2. Go to chr16:28,931,601-28,939,711
          3. Select File > Open URL...
          4. Paste the following URL and click OK - https://quickload-testing.s3.amazonaws.com/smokeTestingQuickload/H_sapiens_Dec_2013/Bam/BAM_hg38_10k_PBMC_CD19.bam
          5. Click Load Data
          6. Right-click on the track label and select Track Operations > Copy
            1. A new track should be created that is a copy of the original track
          7. Click Load Data
          8. Right-click on the track label of the new Copy track and select Track Operations - Note that Find Junctions and Find Junctions (TopHat) are missing.

            Attachments

              Activity

              Ascending order - Click to sort in descending order
              nfreese Nowlan Freese created issue -
              nfreese Nowlan Freese made changes -
              Field Original Value New Value
              Epic Link IGBF-1765 [ 17855 ]
              nfreese Nowlan Freese made changes -
              Status To-Do [ 10305 ] In Progress [ 3 ]
              pkulzer Paige Kulzer made changes -
              Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
              pkulzer Paige Kulzer made changes -
              Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
              pkulzer Paige Kulzer made changes -
              Status First Level Review in Progress [ 10301 ] Needs 1st Level Review [ 10005 ]
              pkulzer Paige Kulzer made changes -
              Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
              pkulzer Paige Kulzer made changes -
              Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
              sjagarap saideepthi jagarapu (Inactive) made changes -
              Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
              sjagarap saideepthi jagarapu (Inactive) made changes -
              Assignee saideepthi jagarapu [ sjagarap ]
              ann.loraine Ann Loraine made changes -
              Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
              ann.loraine Ann Loraine made changes -
              Assignee Ann Loraine [ aloraine ]
              ann.loraine Ann Loraine made changes -
              Assignee Ann Loraine [ aloraine ]
              ann.loraine Ann Loraine made changes -
              Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
              pkulzer Paige Kulzer made changes -
              Assignee Paige Kulzer [ pkulzer ]
              pkulzer Paige Kulzer made changes -
              Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
              pkulzer Paige Kulzer made changes -
              Resolution Done [ 10000 ]
              Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]
              pkulzer Paige Kulzer made changes -
              Assignee Paige Kulzer [ pkulzer ] saideepthi jagarapu [ sjagarap ]

                People

                • Assignee:
                  sjagarap saideepthi jagarapu (Inactive)
                  Reporter:
                  nfreese Nowlan Freese
                • Votes:
                  0 Vote for this issue
                  Watchers:
                  4 Start watching this issue

                  Dates

                  • Created:
                    Updated:
                    Resolved: