Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:2
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Epic Link:
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Sprint:Spring 1, Spring 2
Description
Situation: Dr. Camellia Okpodu of the University of Wyoming is studying the effects of herbicides on Euphorbia esula (leafy spurge), a noxious invasive weed. As of January 2026 there does not appear to be a good reference genome for leafy spurge (NCBI link), so Dr. Okpodu has aligned her data to Euphorbia lathyris (NCBI link).
Task: Add Euphorbia lathyris and its annotation to IGB Quickload. Also, we're increasing scope to include adding this genome to the IGB carousel.
Link: https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_963576675.1/
Note: Only the NCBI RefSeq assembly (GCF) includes the annotation, so please use that one.
Attachments
Issue Links
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- To-Do
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Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link | IGBF-1765 [ 17855 ] |
| Description |
Situation: [Dr. Camellia Okpodu|https://www.uwyo.edu/honors/faculty-staff-directory/clay-fellows/camellia-okpodu.html] of the University of Wyoming is studying the effects of herbicides on Euphorbia esula (leafy spurge), a noxious invasive weed. As of January 2026 there does not appear to be a good reference genome for leafy spurge ([NCBI link|https://www.ncbi.nlm.nih.gov/datasets/genome/?taxon=3993]). So Dr. Okpodu has aligned her data to Euphorbia lathyris ([NCBI link|https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_963576675.1/]).
Task: Add Euphorbia lathyris and its annotation to IGB Quickload. Link: https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_963576675.1/ Note: Only the NCBI RefSeq assembly (GCF) includes the annotation, so please use that one. |
Situation: [Dr. Camellia Okpodu|https://www.uwyo.edu/honors/faculty-staff-directory/clay-fellows/camellia-okpodu.html] of the University of Wyoming is studying the effects of herbicides on Euphorbia esula (leafy spurge), a [noxious invasive weed|https://www.mesacounty.us/news/noxious-weed-and-pest/residents-are-advised-look-out-leafy-spurge-noxious-weed]. As of January 2026 there does not appear to be a good reference genome for leafy spurge ([NCBI link|https://www.ncbi.nlm.nih.gov/datasets/genome/?taxon=3993]). So Dr. Okpodu has aligned her data to Euphorbia lathyris ([NCBI link|https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_963576675.1/]).
Task: Add Euphorbia lathyris and its annotation to IGB Quickload. Link: https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_963576675.1/ Note: Only the NCBI RefSeq assembly (GCF) includes the annotation, so please use that one. |
| Description |
Situation: [Dr. Camellia Okpodu|https://www.uwyo.edu/honors/faculty-staff-directory/clay-fellows/camellia-okpodu.html] of the University of Wyoming is studying the effects of herbicides on Euphorbia esula (leafy spurge), a [noxious invasive weed|https://www.mesacounty.us/news/noxious-weed-and-pest/residents-are-advised-look-out-leafy-spurge-noxious-weed]. As of January 2026 there does not appear to be a good reference genome for leafy spurge ([NCBI link|https://www.ncbi.nlm.nih.gov/datasets/genome/?taxon=3993]). So Dr. Okpodu has aligned her data to Euphorbia lathyris ([NCBI link|https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_963576675.1/]).
Task: Add Euphorbia lathyris and its annotation to IGB Quickload. Link: https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_963576675.1/ Note: Only the NCBI RefSeq assembly (GCF) includes the annotation, so please use that one. |
Situation: [Dr. Camellia Okpodu|https://www.uwyo.edu/honors/faculty-staff-directory/clay-fellows/camellia-okpodu.html] of the University of Wyoming is studying the effects of herbicides on Euphorbia esula (leafy spurge), a [noxious invasive weed|https://www.mesacounty.us/news/noxious-weed-and-pest/residents-are-advised-look-out-leafy-spurge-noxious-weed]. As of January 2026 there does not appear to be a good reference genome for leafy spurge ([NCBI link|https://www.ncbi.nlm.nih.gov/datasets/genome/?taxon=3993]), so Dr. Okpodu has aligned her data to Euphorbia lathyris ([NCBI link|https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_963576675.1/]).
Task: Add Euphorbia lathyris and its annotation to IGB Quickload. Link: https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_963576675.1/ Note: Only the NCBI RefSeq assembly (GCF) includes the annotation, so please use that one. |
| Assignee | Paige Kulzer [ pkulzer ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Assignee | Paige Kulzer [ pkulzer ] | Nowlan Freese [ nfreese ] |
| Assignee | Nowlan Freese [ nfreese ] | Ann Loraine [ aloraine ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | To-Do [ 10305 ] |
| Assignee | Ann Loraine [ aloraine ] | Paige Kulzer [ pkulzer ] |
| Sprint | Spring 1 [ 233 ] | Spring 1, Spring 2 [ 233, 234 ] |
| Rank | Ranked higher |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Assignee | Paige Kulzer [ pkulzer ] | Ann Loraine [ aloraine ] |
| Assignee | Ann Loraine [ aloraine ] | Paige Kulzer [ pkulzer ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | To-Do [ 10305 ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Assignee | Paige Kulzer [ pkulzer ] | Ann Loraine [ aloraine ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Attachment | Euphorbia_lathyris_ies.jpg [ 19056 ] |
| Description |
Situation: [Dr. Camellia Okpodu|https://www.uwyo.edu/honors/faculty-staff-directory/clay-fellows/camellia-okpodu.html] of the University of Wyoming is studying the effects of herbicides on Euphorbia esula (leafy spurge), a [noxious invasive weed|https://www.mesacounty.us/news/noxious-weed-and-pest/residents-are-advised-look-out-leafy-spurge-noxious-weed]. As of January 2026 there does not appear to be a good reference genome for leafy spurge ([NCBI link|https://www.ncbi.nlm.nih.gov/datasets/genome/?taxon=3993]), so Dr. Okpodu has aligned her data to Euphorbia lathyris ([NCBI link|https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_963576675.1/]).
Task: Add Euphorbia lathyris and its annotation to IGB Quickload. Link: https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_963576675.1/ Note: Only the NCBI RefSeq assembly (GCF) includes the annotation, so please use that one. |
Situation: [Dr. Camellia Okpodu|https://www.uwyo.edu/honors/faculty-staff-directory/clay-fellows/camellia-okpodu.html] of the University of Wyoming is studying the effects of herbicides on Euphorbia esula (leafy spurge), a [noxious invasive weed|https://www.mesacounty.us/news/noxious-weed-and-pest/residents-are-advised-look-out-leafy-spurge-noxious-weed]. As of January 2026 there does not appear to be a good reference genome for leafy spurge ([NCBI link|https://www.ncbi.nlm.nih.gov/datasets/genome/?taxon=3993]), so Dr. Okpodu has aligned her data to Euphorbia lathyris ([NCBI link|https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_963576675.1/]).
Task: Add Euphorbia lathyris and its annotation to IGB Quickload. Also, we're increasing scope to include adding this genome to the IGB carousel. Link: https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_963576675.1/ Note: Only the NCBI RefSeq assembly (GCF) includes the annotation, so please use that one. |
| Assignee | Ann Loraine [ aloraine ] | Paige Kulzer [ pkulzer ] |
| Attachment | Euphorbia_lathyris_ies.jpg [ 19056 ] |
| Status | First Level Review in Progress [ 10301 ] | Needs 1st Level Review [ 10005 ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | To-Do [ 10305 ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Assignee | Paige Kulzer [ pkulzer ] | Ann Loraine [ aloraine ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Assignee | Ann Loraine [ aloraine ] | Paige Kulzer [ pkulzer ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Resolution | Done [ 10000 ] | |
| Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |