[IGBF-4387] Investigate missing IGB link in eFP-Seq Browser - JIRA UNCC

Details

Type: Task
Status: To-Do (View Workflow)
Priority: Major
Resolution: Unresolved
Affects Version/s: None
Fix Version/s: None
Labels:
None

Story Points:
2
Epic Link:
Improve IGB for users
Sprint:
Spring 1

Description

Situation: During the eFP-Seq Browser release testing Karthik found that the "Alignments in IGB" link was missing. Looking at the eFP-Seq Browser GitHub page, there is a file cgi-bin/core/custom.js that contains some logic to add the Alignments in IGB link:

if (bam_type === "Amazon AWS") {
 append_str +=
  '<div id="igbLink_' +
  experimentno +
  '">Show: <a href="' +
  igbView_link +
  '" target="_blank" rel="noopener">Alignments in IGB</a></div>';
}

Task: Determine why the Alignments in IGB link is no longer showing up in the eFP-Seq browser.

Attachments

Activity

Ascending order - Click to sort in descending order

Nowlan Freese created issue - 05/Jan/26 3:28 PM

Nowlan Freese made changes - 05/Jan/26 3:28 PM

Field	Original Value	New Value
Epic Link		IGBF-1765 [ 17855 ]

Nowlan Freese made changes - 06/Jan/26 10:39 AM

Description

Situation: During the [eFP-Seq Browser release testing|https://wiki.bioviz.org/confluence/display/ITD/eFP-Seq+Browser] Karthik found that the "Alignments in IGB" link was missing. Looking at the [eFP-Seq Browser GitHub page|https://github.com/BioAnalyticResource/eFP-Seq_Browser], there is a file cgi-bin/core/custom.js that contains some logic to add the Alignments in IGB link:
{quote}if (bam_type === "Amazon AWS") {
append_str +=
  '<div id="igbLink_' +
  experimentno +
  '">Show: <a href="' +
  igbView_link +
  '" target="_blank" rel="noopener">Alignments in IGB</a></div>';
}{quote}

Task: Determine why the Alignments in IGB link is no longer showing up in the eFP-Seq browser.

Situation: During the [eFP-Seq Browser release testing|https://wiki.bioviz.org/confluence/display/ITD/eFP-Seq+Browser] Karthik found that the "Alignments in IGB" link was missing. Looking at the [eFP-Seq Browser GitHub page|https://github.com/BioAnalyticResource/eFP-Seq_Browser], there is a file cgi-bin/core/custom.js that contains some logic to add the Alignments in IGB link:
if (bam_type === "Amazon AWS") {
append_str +=
  '<div id="igbLink_' +
  experimentno +
  '">Show: <a href="' +
  igbView_link +
  '" target="_blank" rel="noopener">Alignments in IGB</a></div>';
}

Task: Determine why the Alignments in IGB link is no longer showing up in the eFP-Seq browser.

Nowlan Freese made changes - 06/Jan/26 10:40 AM

Description

Situation: During the [eFP-Seq Browser release testing|https://wiki.bioviz.org/confluence/display/ITD/eFP-Seq+Browser] Karthik found that the "Alignments in IGB" link was missing. Looking at the [eFP-Seq Browser GitHub page|https://github.com/BioAnalyticResource/eFP-Seq_Browser], there is a file cgi-bin/core/custom.js that contains some logic to add the Alignments in IGB link:
if (bam_type === "Amazon AWS") {
append_str +=
  '<div id="igbLink_' +
  experimentno +
  '">Show: <a href="' +
  igbView_link +
  '" target="_blank" rel="noopener">Alignments in IGB</a></div>';
}

Task: Determine why the Alignments in IGB link is no longer showing up in the eFP-Seq browser.

Situation: During the [eFP-Seq Browser release testing|https://wiki.bioviz.org/confluence/display/ITD/eFP-Seq+Browser] Karthik found that the "Alignments in IGB" link was missing. Looking at the [eFP-Seq Browser GitHub page|https://github.com/BioAnalyticResource/eFP-Seq_Browser], there is a file cgi-bin/core/custom.js that contains some logic to add the Alignments in IGB link:

if (bam_type === "Amazon AWS") {
append_str +=
  '<div id="igbLink_' +
  experimentno +
  '">Show: <a href="' +
  igbView_link +
  '" target="_blank" rel="noopener">Alignments in IGB</a></div>';
}

Task: Determine why the Alignments in IGB link is no longer showing up in the eFP-Seq browser.

Nowlan Freese made changes - 06/Jan/26 10:43 AM

Assignee

Ann Loraine [ aloraine ]

Nowlan Freese made changes - 06/Jan/26 10:44 AM

Description

Situation: During the [eFP-Seq Browser release testing|https://wiki.bioviz.org/confluence/display/ITD/eFP-Seq+Browser] Karthik found that the "Alignments in IGB" link was missing. Looking at the [eFP-Seq Browser GitHub page|https://github.com/BioAnalyticResource/eFP-Seq_Browser], there is a file cgi-bin/core/custom.js that contains some logic to add the Alignments in IGB link:

if (bam_type === "Amazon AWS") {
append_str +=
  '<div id="igbLink_' +
  experimentno +
  '">Show: <a href="' +
  igbView_link +
  '" target="_blank" rel="noopener">Alignments in IGB</a></div>';
}

Task: Determine why the Alignments in IGB link is no longer showing up in the eFP-Seq browser.

Situation: During the [eFP-Seq Browser release testing|https://wiki.bioviz.org/confluence/display/ITD/eFP-Seq+Browser] Karthik found that the "Alignments in IGB" link was missing. Looking at the [eFP-Seq Browser GitHub page|https://github.com/BioAnalyticResource/eFP-Seq_Browser], there is a file [cgi-bin/core/custom.js|https://github.com/BioAnalyticResource/eFP-Seq_Browser/blob/dd51d828cda9e2c93d5c6add87956460576c9353/cgi-bin/core/custom.js#L6] that contains some logic to add the Alignments in IGB link:

if (bam_type === "Amazon AWS") {
append_str +=
  '<div id="igbLink_' +
  experimentno +
  '">Show: <a href="' +
  igbView_link +
  '" target="_blank" rel="noopener">Alignments in IGB</a></div>';
}

Task: Determine why the Alignments in IGB link is no longer showing up in the eFP-Seq browser.

Ann Loraine made changes - 07/Jan/26 12:50 PM

Status

To-Do [ 10305 ]

In Progress [ 3 ]

Ann Loraine made changes - 07/Jan/26 12:51 PM

Description

Situation: During the [eFP-Seq Browser release testing|https://wiki.bioviz.org/confluence/display/ITD/eFP-Seq+Browser] Karthik found that the "Alignments in IGB" link was missing. Looking at the [eFP-Seq Browser GitHub page|https://github.com/BioAnalyticResource/eFP-Seq_Browser], there is a file [cgi-bin/core/custom.js|https://github.com/BioAnalyticResource/eFP-Seq_Browser/blob/dd51d828cda9e2c93d5c6add87956460576c9353/cgi-bin/core/custom.js#L6] that contains some logic to add the Alignments in IGB link:

if (bam_type === "Amazon AWS") {
append_str +=
  '<div id="igbLink_' +
  experimentno +
  '">Show: <a href="' +
  igbView_link +
  '" target="_blank" rel="noopener">Alignments in IGB</a></div>';
}

Task: Determine why the Alignments in IGB link is no longer showing up in the eFP-Seq browser.

Situation: During the [eFP-Seq Browser release testing|https://wiki.bioviz.org/confluence/display/ITD/eFP-Seq+Browser] Karthik found that the "Alignments in IGB" link was missing. Looking at the [eFP-Seq Browser GitHub page|https://github.com/BioAnalyticResource/eFP-Seq_Browser], there is a file [cgi-bin/core/custom.js|https://github.com/BioAnalyticResource/eFP-Seq_Browser/blob/dd51d828cda9e2c93d5c6add87956460576c9353/cgi-bin/core/custom.js#L6] that contains some logic to add the Alignments in IGB link:

{code}
if (bam_type === "Amazon AWS") {
append_str +=
  '<div id="igbLink_' +
  experimentno +
  '">Show: <a href="' +
  igbView_link +
  '" target="_blank" rel="noopener">Alignments in IGB</a></div>';
}
{code}

Task: Determine why the Alignments in IGB link is no longer showing up in the eFP-Seq browser.

Ann Loraine made changes - 14/Jan/26 11:21 AM

Status

In Progress [ 3 ]

To-Do [ 10305 ]

Ann Loraine made changes - 19/Jan/26 11:46 AM

Sprint

Spring 1 [ 233 ]

Spring 1, Spring 2 [ 233, 234 ]

Ann Loraine made changes - 19/Jan/26 11:46 AM

Rank

Ranked higher

Ann Loraine made changes - 22/Jan/26 1:53 PM

Sprint

Spring 1, Spring 2 [ 233, 234 ]

Spring 1 [ 233 ]

People

Assignee:

Ann Loraine

Reporter:

Nowlan Freese

Votes:

0 Vote for this issue

Watchers:

2 Start watching this issue

Dates

Created:

05/Jan/26 3:28 PM

Updated:

22/Jan/26 1:53 PM