Uploaded image for project: 'IGB'
  1. IGB
  2. IGBF-4392

GRN pairwise comparisons

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None

          Description

          Run Genie3 using the comparison method to determine how transcription factors change through conditions.

            Attachments

              Activity

              Ascending order - Click to sort in descending order
              bbendick Brandon Bendickson created issue -
              bbendick Brandon Bendickson made changes -
              Field Original Value New Value
              Epic Link IGBF-2993 [ 21429 ]
              bbendick Brandon Bendickson made changes -
              Status To-Do [ 10305 ] In Progress [ 3 ]
              bbendick Brandon Bendickson made changes -
              Status In Progress [ 3 ] To-Do [ 10305 ]
              bbendick Brandon Bendickson made changes -
              Description Run Genie3 using the comparison method to determine how transcription factors change through conditions. Run Genie3 using the comparison method to determine how transcription factors change through conditions.

              Link: https://planttfdb.gao-lab.org/
              bbendick Brandon Bendickson made changes -
              Description Run Genie3 using the comparison method to determine how transcription factors change through conditions.

              Link: https://planttfdb.gao-lab.org/               		Run Genie3 using the comparison method to determine how transcription factors change through conditions.

              bbendick Brandon Bendickson made changes -
              Status To-Do [ 10305 ] In Progress [ 3 ]
              Hide
              Permalink
              bbendick Brandon Bendickson added a comment -

              Ran on all conditions. Need to make a nice figure to visualize results.

              Show
              bbendick Brandon Bendickson added a comment - Ran on all conditions. Need to make a nice figure to visualize results.
              ann.loraine Ann Loraine made changes -
              Sprint Spring 1 [ 233 ] Spring 1, Spring 2 [ 233, 234 ]
              ann.loraine Ann Loraine made changes -
              Rank Ranked higher
              Hide
              Permalink
              robofjoy Robert Reid added a comment -

              Add to the main powerpoint for Kelsey and Ravi as well.

              Show
              robofjoy Robert Reid added a comment - Add to the main powerpoint for Kelsey and Ravi as well.
              ann.loraine Ann Loraine made changes -
              Sprint Spring 1, Spring 2 [ 233, 234 ] Spring 1, Spring 2, Spring 3 [ 233, 234, 235 ]
              ann.loraine Ann Loraine made changes -
              Rank Ranked higher
              bbendick Brandon Bendickson made changes -
              Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
              bbendick Brandon Bendickson made changes -
              Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
              bbendick Brandon Bendickson made changes -
              Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
              bbendick Brandon Bendickson made changes -
              Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
              bbendick Brandon Bendickson made changes -
              Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
              bbendick Brandon Bendickson made changes -
              Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
              bbendick Brandon Bendickson made changes -
              Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
              bbendick Brandon Bendickson made changes -
              Resolution Done [ 10000 ]
              Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]

                People

                • Assignee:
                  bbendick Brandon Bendickson
                  Reporter:
                  bbendick Brandon Bendickson
                • Votes:
                  0 Vote for this issue
                  Watchers:
                  2 Start watching this issue

                  Dates

                  • Created:
                    Updated:
                    Resolved: