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  1. IGB
  2. IGBF-4403

Summarize which salmon counts table is best suited for DEseq2

        Details

        • Type: Task
        • Status: Needs 1st Level Review (View Workflow)
        • Priority: Major
        • Resolution: Unresolved
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
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          Description

          GOAL: to figure out which of the generated salmon count tables is best suited for Deseq2 analysis.
          Salmon will generated multiple tables, some of which are normalized (e.g., TPM).

          To be assigned to Milana.

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              robofjoy Robert Reid created issue -
              robofjoy Robert Reid made changes -
              Field Original Value New Value
              Epic Link IGBF-2993 [ 21429 ]
              robofjoy Robert Reid made changes -
              Status To-Do [ 10305 ] In Progress [ 3 ]
              robofjoy Robert Reid made changes -
              Assignee Robert Reid [ robertreid ] Milana Serkin [ mserkin ]
              ann.loraine Ann Loraine made changes -
              Sprint Spring 2 [ 234 ] Spring 2, Spring 3 [ 234, 235 ]
              ann.loraine Ann Loraine made changes -
              Rank Ranked higher
              robofjoy Robert Reid made changes -
              Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
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              mserkin Milana Serkin added a comment -

              use the salmon.merged.gene_counts.tsv

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              mserkin Milana Serkin added a comment - use the salmon.merged.gene_counts.tsv
              mserkin Milana Serkin made changes -
              Assignee Milana Serkin [ mserkin ] Robert Reid [ robertreid ]

                People

                • Assignee:
                  robofjoy Robert Reid
                  Reporter:
                  robofjoy Robert Reid
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                  Dates

                  • Created:
                    Updated: