Uploaded image for project: 'IGB'
  1. IGB
  2. IGBF-517

Add additional information about why a file is unable to load

    Details

    • Type: Improvement
    • Status: Closed (View Workflow)
    • Priority: Major
    • Resolution: Done
    • Affects Version/s: None
    • Fix Version/s: None
    • Labels:
    • Story Points:
      1
    • Sprint:
      Winter 2018 Sprint 3, Spring 2019 Sprint 1

      Description

      Several people have posted in Biostars about how they have had difficulty opening files in IGB (see https://www.biostars.org/p/107856/#136590 for an example). Ultimately the issue is not with IGB, but that the files do not match the correct standard. For example, there was no header information in a WIG file, or there was a BED file embedded inside of a WIG file.

      However, if a file is an accepted format, but does not follow a standard format, the user is only told that IGB is "Unable to load data set for this file." In the future it may be helpful to the user to provide more information as to why the file was unable to load, i.e. no header/track line given, number of columns does not match accepted format, etc. This would allow the user to better diagnose the issue, and help keep them from immediately placing the fault on IGB.

        Attachments

        1. brokenBed.bed
          0.2 kB
        2. unableToLoad.png
          unableToLoad.png
          231 kB
        3. workingBed.bed
          0.2 kB

          Issue Links

            Activity

            nfreese Nowlan Freese created issue -
            nfreese Nowlan Freese made changes -
            Field Original Value New Value
            Epic Link IGBF-501 [ 15563 ]
            nfreese Nowlan Freese made changes -
            Rank Ranked higher
            nfreese Nowlan Freese made changes -
            Issue Type New Feature [ 2 ] Improvement [ 4 ]
            Assignee David Norris [ dcnorris ]
            nfreese Nowlan Freese made changes -
            Epic Link IGBF-501 [ 15563 ] IGBF-440 [ 15498 ]
            mason Mason Meyer (Inactive) made changes -
            Rank Ranked lower
            ann.loraine Ann Loraine made changes -
            Epic Link IGBF-440 [ 15498 ] IGBF-594 [ 15667 ]
            ann.loraine Ann Loraine made changes -
            Epic Link IGBF-594 [ 15667 ]
            nfreese Nowlan Freese made changes -
            Rank Ranked higher
            ann.loraine Ann Loraine made changes -
            Priority Minor [ 4 ] Major [ 3 ]
            ann.loraine Ann Loraine made changes -
            Story Points 1
            Sprint Winter 2018 Sprint 3 [ 58 ]
            Labels Beginner
            nfreese Nowlan Freese made changes -
            Attachment unableToLoad.png [ 14215 ]
            nfreese Nowlan Freese made changes -
            Attachment brokenBed.bed [ 14216 ]
            Attachment unableToLoad.png [ 14217 ]
            Attachment workingBed.bed [ 14218 ]
            nfreese Nowlan Freese made changes -
            Attachment unableToLoad.png [ 14217 ]
            svallapu Sai Charan Reddy Vallapureddy (Inactive) made changes -
            Status Open [ 1 ] In Progress [ 3 ]
            svallapu Sai Charan Reddy Vallapureddy (Inactive) made changes -
            Assignee Sai Charan Reddy Vallapureddy [ svallapu ]
            svallapu Sai Charan Reddy Vallapureddy (Inactive) made changes -
            Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
            svallapu Sai Charan Reddy Vallapureddy (Inactive) made changes -
            Assignee Sai Charan Reddy Vallapureddy [ svallapu ]
            nfreese Nowlan Freese made changes -
            Status Needs 1st Level Review [ 10005 ] Reviewing [ 10301 ]
            nfreese Nowlan Freese made changes -
            Assignee Nowlan Freese [ nfreese ]
            nfreese Nowlan Freese made changes -
            Assignee Nowlan Freese [ nfreese ] Sai Charan Reddy Vallapureddy [ svallapu ]
            nfreese Nowlan Freese made changes -
            Status Reviewing [ 10301 ] Ready for Pull Request [ 10304 ]
            svallapu Sai Charan Reddy Vallapureddy (Inactive) made changes -
            Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
            svallapu Sai Charan Reddy Vallapureddy (Inactive) made changes -
            Assignee Sai Charan Reddy Vallapureddy [ svallapu ]
            nfreese Nowlan Freese made changes -
            Assignee Sai Charan Reddy Vallapureddy [ svallapu ]
            ann.loraine Ann Loraine made changes -
            Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
            ann.loraine Ann Loraine made changes -
            Assignee Sai Charan Reddy Vallapureddy [ svallapu ] Ann Loraine [ aloraine ]
            ann.loraine Ann Loraine made changes -
            Link This issue relates to IGBF-1515 [ IGBF-1515 ]
            ann.loraine Ann Loraine made changes -
            Rank Ranked higher
            ann.loraine Ann Loraine made changes -
            Sprint Winter 2018 Sprint 3 [ 58 ] Winter 2018 Sprint 3, Spring 2019 Sprint 1 [ 58, 59 ]
            ann.loraine Ann Loraine made changes -
            Rank Ranked higher
            ann.loraine Ann Loraine made changes -
            Link This issue relates to IGBF-1517 [ IGBF-1517 ]
            ann.loraine Ann Loraine made changes -
            Link This issue relates to IGBF-1518 [ IGBF-1518 ]
            ann.loraine Ann Loraine made changes -
            Status Reviewing Pull Request [ 10303 ] Needs Testing [ 10002 ]
            ann.loraine Ann Loraine made changes -
            Assignee Ann Loraine [ aloraine ]
            ann.loraine Ann Loraine made changes -
            Rank Ranked higher
            nfreese Nowlan Freese made changes -
            Status Needs Testing [ 10002 ] Testing In Progress [ 10003 ]
            karthik Karthik Raveendran made changes -
            Comment [ Testing Windows: Works Correctly ]
            karthik Karthik Raveendran made changes -
            Comment [ Testing Windows: Working Correctly

            Note: In the right click menu, the Get Info and Google menu options are unordered. This was not part of this issue, but would be related. A separate issue will be raised. ]
            svallapu Sai Charan Reddy Vallapureddy (Inactive) made changes -
            Resolution Done [ 10000 ]
            Status Testing In Progress [ 10003 ] Closed [ 6 ]
            svallapu Sai Charan Reddy Vallapureddy (Inactive) made changes -
            Assignee Sai Charan Reddy Vallapureddy [ svallapu ]
            ann.loraine Ann Loraine made changes -
            Workflow Loraine Lab Workflow [ 15783 ] Fall 2019 Workflow Update [ 19424 ]
            ann.loraine Ann Loraine made changes -
            Workflow Fall 2019 Workflow Update [ 19424 ] Revised Fall 2019 Workflow Update [ 21541 ]

              People

              • Assignee:
                svallapu Sai Charan Reddy Vallapureddy (Inactive)
                Reporter:
                nfreese Nowlan Freese
              • Votes:
                0 Vote for this issue
                Watchers:
                4 Start watching this issue

                Dates

                • Created:
                  Updated:
                  Resolved: