Details
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Type:
Bug
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Status: In Progress (View Workflow)
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Priority:
Major
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Resolution: Unresolved
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:0.25
Description
It seems that IGB is not parsing the "Score" field for GFF and possibly for GTF files. (It IS parsing the score field for the GFF3 format though.)
We should fix this in the near future and make sure it works for all versions of GFF. (GFF, GFF2, GFF3, and GTF).
Attachments
Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link | IGBF-439 [ 15497 ] |
| Summary | "Score" field is not being parsed for GFF files | "Score" field is not being parsed for GFF or GTF files |
| Description |
It seems that IGB is not parsing the "Score" field for GFF files. (It IS parsing the score field for the GFF3 format though.)
We should fix this in the near future and make sure it works for all versions of GFF. (GFF, GFF2, GFF3, and GTF). |
It seems that IGB is not parsing the "Score" field for GFF and GTF files. (It IS parsing the score field for the GFF3 format though.)
We should fix this in the near future and make sure it works for all versions of GFF. (GFF, GFF2, GFF3, and GTF). |
| Summary | "Score" field is not being parsed for GFF or GTF files | "Score" field is not being parsed for GFF files |
| Description |
It seems that IGB is not parsing the "Score" field for GFF and GTF files. (It IS parsing the score field for the GFF3 format though.)
We should fix this in the near future and make sure it works for all versions of GFF. (GFF, GFF2, GFF3, and GTF). |
It seems that IGB is not parsing the "Score" field for GFF and possibly for GTF files. (It IS parsing the score field for the GFF3 format though.)
We should fix this in the near future and make sure it works for all versions of GFF. (GFF, GFF2, GFF3, and GTF). |
| Story Points | 0.25 |
| Assignee | David Norris [ dcnorris ] |
| Rank | Ranked higher |
| Rank | Ranked lower |
| Assignee | David Norris [ dcnorris ] | Tarun Mall [ tmall ] |
| Fix Version/s | 8.3.3 Minor Release [ 10000 ] |
| Rank | Ranked higher |
| Status | Open [ 1 ] | In Progress [ 3 ] |
It turns out this is the result of the types of glyphs which are used to wrap groups of annotations in GFF files. The fix for this is larger than I am comfortable with for a minor release.
| Fix Version/s | 8.4.0 Major Release [ 10001 ] | |
| Fix Version/s | 8.3.4 Minor Release [ 10000 ] |
| Assignee | Tarun Mall [ tmall ] | David Norris [ dcnorris ] |
| Sprint | Sprint 19 [ 24 ] |
| Sprint | Sprint 20 [ 25 ] |
| Rank | Ranked higher |
| Sprint | Sprint 20 [ 25 ] |
| Rank | Ranked lower |
| Rank | Ranked higher |
| Fix Version/s | 8.4.0 Major Release [ 10001 ] |
| Rank | Ranked higher |
| Rank | Ranked higher |
| Epic Link | IGBF-439 [ 15497 ] |
| Workflow | Loraine Lab Workflow [ 15882 ] | Fall 2019 Workflow Update [ 19063 ] |
| Workflow | Fall 2019 Workflow Update [ 19063 ] | Revised Fall 2019 Workflow Update [ 21181 ] |
SingletonSymWithProps is being created instead of UcscGffSym