Details
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Type:
Bug
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: 8.4.0 Major Release
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Labels:None
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Epic Link:
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Sprint:Sprint 20
Description
Under Preferences within the data sources tab, a null pointer exception is generated when adding or editing a source with an incorrect URL format, such as just "http" (with no colon or slashes).
See the comment below for the exception.
Attachments
Activity
The problem is fixed. Have to discuss basic validation for URL to add.
12:54:55.715 ERROR c.a.genometry.thread.CThreadWorker - null
java.lang.NullPointerException: null
at com.lorainelab.quickload.util.QuickloadUtils.isValidRequest(QuickloadUtils.java:183) ~[na:na]
at com.lorainelab.quickload.util.QuickloadUtils.getInputStream(QuickloadUtils.java:203) ~[na:na]
at com.lorainelab.quickload.util.QuickloadUtils.loadSupportedGenomeVersionInfo(QuickloadUtils.java:100) ~[na:na]
at com.lorainelab.quickload.QuickloadDataProvider.populateSupportedGenomeVersionInfo(QuickloadDataProvider.java:93) ~[na:na]
at com.lorainelab.quickload.QuickloadDataProvider.initialize(QuickloadDataProvider.java:71) ~[na:na]
at com.affymetrix.igb.general.DataProviderManager.initializeDataProvider(DataProviderManager.java:241) ~[na:na]
at com.affymetrix.igb.general.DataProviderManager.addDataProvider(DataProviderManager.java:234) ~[na:na]
at com.affymetrix.igb.prefs.AddDataProvider$5.runInBackground(AddDataProvider.java:297) ~[na:na]
at com.affymetrix.igb.prefs.AddDataProvider$5.runInBackground(AddDataProvider.java:276) ~[na:na]
at com.affymetrix.genometry.thread.CThreadWorker.doInBackground(CThreadWorker.java:73) ~[na:na]
at javax.swing.SwingWorker$1.call(Unknown Source) [na:1.8.0_40]
at java.util.concurrent.FutureTask.run(Unknown Source) [na:1.8.0_40]
at javax.swing.SwingWorker.run(Unknown Source) [na:1.8.0_40]
at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source) [na:1.8.0_40]
at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) [na:1.8.0_40]
at java.lang.Thread.run(Unknown Source) [na:1.8.0_40]
12:54:55.789 ERROR c.a.igb.prefs.AddDataProvider - java.lang.NullPointerException
java.util.concurrent.ExecutionException: java.lang.NullPointerException
at java.util.concurrent.FutureTask.report(Unknown Source) ~[na:1.8.0_40]
at java.util.concurrent.FutureTask.get(Unknown Source) ~[na:1.8.0_40]
at javax.swing.SwingWorker.get(Unknown Source) ~[na:1.8.0_40]
at com.affymetrix.igb.prefs.AddDataProvider$5.finished(AddDataProvider.java:311) ~[na:na]
at com.affymetrix.genometry.thread.CThreadWorker.done(CThreadWorker.java:51) [genometry-8.4.0.jar:na]
at javax.swing.SwingWorker$5.run(Unknown Source) [na:1.8.0_40]
at javax.swing.SwingWorker$DoSubmitAccumulativeRunnable.run(Unknown Source) [na:1.8.0_40]
at sun.swing.AccumulativeRunnable.run(Unknown Source) [na:1.8.0_40]
at javax.swing.SwingWorker$DoSubmitAccumulativeRunnable.actionPerformed(Unknown Source) [na:1.8.0_40]
at javax.swing.Timer.fireActionPerformed(Unknown Source) [na:1.8.0_40]
at javax.swing.Timer$DoPostEvent.run(Unknown Source) [na:1.8.0_40]
at java.awt.event.InvocationEvent.dispatch(Unknown Source) [na:1.8.0_40]
at java.awt.EventQueue.dispatchEventImpl(Unknown Source) [na:1.8.0_40]
at java.awt.EventQueue.access$500(Unknown Source) [na:1.8.0_40]
at java.awt.EventQueue$3.run(Unknown Source) [na:1.8.0_40]
at java.awt.EventQueue$3.run(Unknown Source) [na:1.8.0_40]
at java.security.AccessController.doPrivileged(Native Method) [na:1.8.0_40]
at java.security.ProtectionDomain$1.doIntersectionPrivilege(Unknown Source) [na:1.8.0_40]
at java.awt.EventQueue.dispatchEvent(Unknown Source) [na:1.8.0_40]
at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source) [na:1.8.0_40]
at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source) [na:1.8.0_40]
at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source) [na:1.8.0_40]
at java.awt.EventDispatchThread.pumpEvents(Unknown Source) [na:1.8.0_40]
at java.awt.EventDispatchThread.pumpEvents(Unknown Source) [na:1.8.0_40]
at java.awt.EventDispatchThread.run(Unknown Source) [na:1.8.0_40]
Caused by: java.lang.NullPointerException: null
at com.lorainelab.quickload.util.QuickloadUtils.isValidRequest(QuickloadUtils.java:183) ~[na:na]
at com.lorainelab.quickload.util.QuickloadUtils.getInputStream(QuickloadUtils.java:203) ~[na:na]
at com.lorainelab.quickload.util.QuickloadUtils.loadSupportedGenomeVersionInfo(QuickloadUtils.java:100) ~[na:na]
at com.lorainelab.quickload.QuickloadDataProvider.populateSupportedGenomeVersionInfo(QuickloadDataProvider.java:93) ~[na:na]
at com.lorainelab.quickload.QuickloadDataProvider.initialize(QuickloadDataProvider.java:71) ~[na:na]
at com.affymetrix.igb.general.DataProviderManager.initializeDataProvider(DataProviderManager.java:241) ~[na:na]
at com.affymetrix.igb.general.DataProviderManager.addDataProvider(DataProviderManager.java:234) ~[na:na]
at com.affymetrix.igb.prefs.AddDataProvider$5.runInBackground(AddDataProvider.java:297) ~[na:na]
at com.affymetrix.igb.prefs.AddDataProvider$5.runInBackground(AddDataProvider.java:276) ~[na:na]
at com.affymetrix.genometry.thread.CThreadWorker.doInBackground(CThreadWorker.java:73) [genometry-8.4.0.jar:na]
at javax.swing.SwingWorker$1.call(Unknown Source) ~[na:1.8.0_40]
at java.util.concurrent.FutureTask.run(Unknown Source) ~[na:1.8.0_40]
at javax.swing.SwingWorker.run(Unknown Source) ~[na:1.8.0_40]
at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source) ~[na:1.8.0_40]
at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) ~[na:1.8.0_40]
at java.lang.Thread.run(Unknown Source) ~[na:1.8.0_40]
Created IGBF-669 to address Tarun's comment above. Otherwise, my testing verifies that this issue has been resolved so it will now be closed.