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  1. IGB
  2. IGBF-673

Chromsomes may not be sorting correctly under the Current Genome Tab for D. rerio

        Details

          Description

          It seems that chromosomes may not be sorting correctly under the current genome tab within the D. rerio genome.

          This genome has several unusual chromosomes with a title like "Zv9_scaffold3564". When the genome is opened this long list of unusual chromosomes is listed first and then the "Chr1, Chr2, etc." are listed at the bottom.

          This should be fixed so that "Chr1" is at the top of the list when the genome is selected, making it so that the genome opens to the first chromosome by default.

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              relates to

              Improvement - An improvement or enhancement to an existing feature or task. IGBF-695 IGB should sort chromosomes from "Chr1, Chr2, Chr3,...ChrX,ChrY,ChrC,....etc."

              • Major - Major loss of function.
              • Closed

                Activity

                Ascending order - Click to sort in descending order
                mason Mason Meyer (Inactive) created issue -
                mason Mason Meyer (Inactive) made changes -
                Field Original Value New Value
                Epic Link IGBF-497 [ 15559 ]
                mason Mason Meyer (Inactive) made changes -
                Rank Ranked higher
                mason Mason Meyer (Inactive) made changes -
                Sprint Backlog Grooming Meeting [ 29 ]
                mason Mason Meyer (Inactive) made changes -
                Rank Ranked lower
                dcnorris David Norris (Inactive) made changes -
                Sprint Backlog Grooming Meeting [ 29 ] Sprint 21 [ 26 ]
                dcnorris David Norris (Inactive) made changes -
                Rank Ranked higher
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                mason Mason Meyer (Inactive) added a comment -

                In the backlog grooming meeting it has been decided that by default, the order seen in the table in the Current Genome tab should first respect the contents of the genome.txt file.

                Sorting would not happen until clicking the heading of one of the titles at the top of the table (either sequence(s) or length).

                Ask Ann for clarification.

                Show
                mason Mason Meyer (Inactive) added a comment - In the backlog grooming meeting it has been decided that by default, the order seen in the table in the Current Genome tab should first respect the contents of the genome.txt file. Sorting would not happen until clicking the heading of one of the titles at the top of the table (either sequence(s) or length). Ask Ann for clarification.
                mason Mason Meyer (Inactive) made changes -
                Fix Version/s 8.4.0 Major Release [ 10001 ]
                mason Mason Meyer (Inactive) made changes -
                Assignee Tarun Mall [ tmall ]
                dcnorris David Norris (Inactive) made changes -
                Story Points 0.25
                tmall Tarun Mall (Inactive) made changes -
                Status Open [ 1 ] In Progress [ 3 ]
                tmall Tarun Mall (Inactive) made changes -
                Status In Progress [ 3 ] Pull Request Submitted [ 10101 ]
                tmall Tarun Mall (Inactive) made changes -
                Status Pull Request Submitted [ 10101 ] Needs Testing [ 10002 ]
                mason Mason Meyer (Inactive) made changes -
                Status Needs Testing [ 10002 ] Testing In Progress [ 10003 ]
                mason Mason Meyer (Inactive) made changes -
                Assignee Tarun Mall [ tmall ] Mason Meyer [ mason ]
                mason Mason Meyer (Inactive) made changes -
                Link This issue relates to IGBF-695 [ IGBF-695 ]
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                mason Mason Meyer (Inactive) added a comment -

                My testing confirms that the current genome tab is now ordering chromosomes based on the order of the genome.txt files. Since this story is resolved it will now be closed.

                Show
                mason Mason Meyer (Inactive) added a comment - My testing confirms that the current genome tab is now ordering chromosomes based on the order of the genome.txt files. Since this story is resolved it will now be closed.
                mason Mason Meyer (Inactive) made changes -
                Resolution Done [ 10000 ]
                Status Testing In Progress [ 10003 ] Closed [ 6 ]
                ann.loraine Ann Loraine made changes -
                Workflow Loraine Lab Workflow [ 15966 ] Fall 2019 Workflow Update [ 19500 ]
                ann.loraine Ann Loraine made changes -
                Workflow Fall 2019 Workflow Update [ 19500 ] Revised Fall 2019 Workflow Update [ 21617 ]

                  People

                  • Assignee:
                    mason Mason Meyer (Inactive)
                    Reporter:
                    mason Mason Meyer (Inactive)
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                    Dates

                    • Created:
                      Updated:
                      Resolved: