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  1. IGB
  2. IGBF-878

Some genomes' models will not start in ProtAnnot

        Details

        • Type: Bug
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:

          Description

          While testing I noticed that some genomes' gene models will not start in Prot Annot (the message saying that no gene model is selected appears.)

          To reproduce:

          1) Go to a genome containing such as Saccharomyces cerevisiae, Bos taurus, or Tribolium castaneum and try to start ProtAnnot for a gene model.

          *Observe:
          ProtAnnot thinks that no gene model has been selected.

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              Activity

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              mason Mason Meyer (Inactive) created issue -
              mason Mason Meyer (Inactive) made changes -
              Field Original Value New Value
              Epic Link IGBF-439 [ 15497 ]
              mason Mason Meyer (Inactive) made changes -
              Summary GFF files will not start in ProtAnnot Some genome's models will not start in ProtAnnot
              mason Mason Meyer (Inactive) made changes -
              Description While testing I noticed that GFF gene models are will not start in Prot Annot (the message saying that no gene model is selected appears.)

              To reproduce:

              1) Go to a genome containing GFF gene models, (such as Saccharomyces cerevisiae or Bos taurus) and try to start ProtAnnot for a gene model.

              *Observe:
              ProtAnnot thinks that no gene model has been selected.               		While testing I noticed that some genome's gene models will not start in Prot Annot (the message saying that no gene model is selected appears.)

              To reproduce:

              1) Go to a genome containing such as Saccharomyces cerevisiae or Bos taurus and try to start ProtAnnot for a gene model.

              *Observe:
              ProtAnnot thinks that no gene model has been selected.
              mason Mason Meyer (Inactive) made changes -
              Description While testing I noticed that some genome's gene models will not start in Prot Annot (the message saying that no gene model is selected appears.)

              To reproduce:

              1) Go to a genome containing such as Saccharomyces cerevisiae or Bos taurus and try to start ProtAnnot for a gene model.

              *Observe:
              ProtAnnot thinks that no gene model has been selected.               		While testing I noticed that some genome's gene models will not start in Prot Annot (the message saying that no gene model is selected appears.)

              To reproduce:

              1) Go to a genome containing such as Saccharomyces cerevisiae, Bos taurus, or Tribolium castaneum and try to start ProtAnnot for a gene model.

              *Observe:
              ProtAnnot thinks that no gene model has been selected.
              mason Mason Meyer (Inactive) made changes -
              Description While testing I noticed that some genome's gene models will not start in Prot Annot (the message saying that no gene model is selected appears.)

              To reproduce:

              1) Go to a genome containing such as Saccharomyces cerevisiae, Bos taurus, or Tribolium castaneum and try to start ProtAnnot for a gene model.

              *Observe:
              ProtAnnot thinks that no gene model has been selected.               		While testing I noticed that some genomes' gene models will not start in Prot Annot (the message saying that no gene model is selected appears.)

              To reproduce:

              1) Go to a genome containing such as Saccharomyces cerevisiae, Bos taurus, or Tribolium castaneum and try to start ProtAnnot for a gene model.

              *Observe:
              ProtAnnot thinks that no gene model has been selected.
              mason Mason Meyer (Inactive) made changes -
              Summary Some genome's models will not start in ProtAnnot Some genomes' models will not start in ProtAnnot
              tmall Tarun Mall (Inactive) made changes -
              Status Open [ 1 ] In Progress [ 3 ]
              tmall Tarun Mall (Inactive) made changes -
              Status In Progress [ 3 ] Pull Request Submitted [ 10101 ]
              tmall Tarun Mall (Inactive) made changes -
              Status Pull Request Submitted [ 10101 ] Needs Testing [ 10002 ]
              mason Mason Meyer (Inactive) made changes -
              Status Needs Testing [ 10002 ] Testing In Progress [ 10003 ]
              mason Mason Meyer (Inactive) made changes -
              Assignee Tarun Mall [ tmall ] Mason Meyer [ mason ]
              mason Mason Meyer (Inactive) made changes -
              Rank Ranked higher
              Hide
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              mason Mason Meyer (Inactive) added a comment -

              Testing for this issue included making sure that gene models from Saccharomyces cerevisiae, Bos taurus, and Tribolium castaneum all opened into ProtAnnot appropriately and that all PA options, such as InterProScan, functioned as expected for these gene models.

              Since this issue is resolved it will now be closed.

              Show
              mason Mason Meyer (Inactive) added a comment - Testing for this issue included making sure that gene models from Saccharomyces cerevisiae, Bos taurus, and Tribolium castaneum all opened into ProtAnnot appropriately and that all PA options, such as InterProScan, functioned as expected for these gene models. Since this issue is resolved it will now be closed.
              mason Mason Meyer (Inactive) made changes -
              Resolution Done [ 10000 ]
              Status Testing In Progress [ 10003 ] Closed [ 6 ]
              jeckstein John Eckstein (Inactive) made changes -
              Resolution Done [ 10000 ]
              Status Closed [ 6 ] Open [ 1 ]
              jeckstein John Eckstein (Inactive) made changes -
              Labels ProtAnnot
              jeckstein John Eckstein (Inactive) made changes -
              Resolution Done [ 10000 ]
              Status Open [ 1 ] Closed [ 6 ]
              ann.loraine Ann Loraine made changes -
              Workflow Loraine Lab Workflow [ 16288 ] Fall 2019 Workflow Update [ 19617 ]
              ann.loraine Ann Loraine made changes -
              Workflow Fall 2019 Workflow Update [ 19617 ] Revised Fall 2019 Workflow Update [ 21736 ]

                People

                • Assignee:
                  mason Mason Meyer (Inactive)
                  Reporter:
                  mason Mason Meyer (Inactive)
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                  Watchers:
                  1 Start watching this issue

                  Dates

                  • Created:
                    Updated:
                    Resolved: