Details
-
Type:
Bug
-
Status: Closed (View Workflow)
-
Priority:
Major
-
Resolution: Done
-
Affects Version/s: None
-
Fix Version/s: None
-
Labels:None
-
Epic Link:
-
Sprint:Sprint 26
Description
Original description is now out of date. Please read comments below to see the new details of this story.
When I click on an insertion (red box on top of read alignment) I'm supposed to be able to get the sequence of the insertion by selected the Selection Info table, as in this documentation:
https://wiki.transvar.org/display/igbman/Visualizing+Insertions,+Deletions,+and+Mismatches
However, this no longer happens.
Instead, what happens is that the information for the read appears and the bottom row of the Selection Info table reads: "feature type " "insertion".
The previous behavior should be restored for the next minor release if possible.
Attachments
Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link | IGBF-439 [ 15497 ] |
| Rank | Ranked higher |
| Sprint | Backlog Grooming Meeting [ 34 ] | Sprint 25 [ 32 ] |
| Rank | Ranked lower |
| Assignee | Tarun Mall [ tmall ] |
| Status | Open [ 1 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | Open [ 1 ] |
| Status | Open [ 1 ] | In Progress [ 3 ] |
| Rank | Ranked lower |
| Status | In Progress [ 3 ] | Open [ 1 ] |
| Status | Open [ 1 ] | Pull Request Submitted [ 10101 ] |
| Status | Pull Request Submitted [ 10101 ] | Needs Testing [ 10002 ] |
| Rank | Ranked higher |
| Status | Needs Testing [ 10002 ] | Testing In Progress [ 10003 ] |
| Rank | Ranked higher |
| Assignee | Tarun Mall [ tmall ] | Mason Meyer [ mason ] |
| Status | Testing In Progress [ 10003 ] | Needs Testing [ 10002 ] |
| Sprint | Sprint 25 [ 32 ] |
| Sprint | Sprint 26 [ 34 ] |
| Rank | Ranked higher |
| Summary | Sequence of Insertion is no longer available in Selection Info | Filter out read information from selection info when selecting an insertion |
| Fix Version/s | 8.4.3 Minor Release [ 10100 ] |
| Description |
When I click on an insertion (red box on top of read alignment) I'm supposed to be able to get the sequence of the insertion by selected the Selection Info table, as in this documentation:
https://wiki.transvar.org/display/igbman/Visualizing+Insertions,+Deletions,+and+Mismatches However, this no longer happens. Instead, what happens is that the information for the read appears and the bottom row of the Selection Info table reads: "feature type " "insertion". The previous behavior should be restored for the next minor release if possible. |
*Original description is now out of date. Please read comments below to see the new details of this story.
When I click on an insertion (red box on top of read alignment) I'm supposed to be able to get the sequence of the insertion by selected the Selection Info table, as in this documentation: https://wiki.transvar.org/display/igbman/Visualizing+Insertions,+Deletions,+and+Mismatches However, this no longer happens. Instead, what happens is that the information for the read appears and the bottom row of the Selection Info table reads: "feature type " "insertion". The previous behavior should be restored for the next minor release if possible. |
| Description |
*Original description is now out of date. Please read comments below to see the new details of this story.
When I click on an insertion (red box on top of read alignment) I'm supposed to be able to get the sequence of the insertion by selected the Selection Info table, as in this documentation: https://wiki.transvar.org/display/igbman/Visualizing+Insertions,+Deletions,+and+Mismatches However, this no longer happens. Instead, what happens is that the information for the read appears and the bottom row of the Selection Info table reads: "feature type " "insertion". The previous behavior should be restored for the next minor release if possible. |
*Original description is now out of date. Please read comments below to see the new details of this story.*
When I click on an insertion (red box on top of read alignment) I'm supposed to be able to get the sequence of the insertion by selected the Selection Info table, as in this documentation: https://wiki.transvar.org/display/igbman/Visualizing+Insertions,+Deletions,+and+Mismatches However, this no longer happens. Instead, what happens is that the information for the read appears and the bottom row of the Selection Info table reads: "feature type " "insertion". The previous behavior should be restored for the next minor release if possible. |
This story has changed a bit in in that we are now choosing to filter out unnecessary read information from selection info when selecting an insertion.
It turned out the the sequence of the insertion was actually present in the selection info but all of the other unnecessary information made this field harder to notice.
| Rank | Ranked higher |
Testing for this issue consisted of checking selection info for insertions to verify that unnecessary read information had been removed. I also verified that the sequence of reads was accurate and that no other valuable information was removed.
Since this issue is resolved it will now be closed.
| Resolution | Done [ 10000 ] | |
| Status | Needs Testing [ 10002 ] | Closed [ 6 ] |
| Workflow | Loraine Lab Workflow [ 16294 ] | Fall 2019 Workflow Update [ 19622 ] |
| Workflow | Fall 2019 Workflow Update [ 19622 ] | Revised Fall 2019 Workflow Update [ 21741 ] |
I am not sure what information is missing from Selection Info table. I can see residue in Selection. Need to discuss this.