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  1. IGB
  2. IGBF-886

Canceling InterProScan Job Configuration after InterProScan is finished generates an exception

    Details

    • Type: Bug
    • Status: Closed (View Workflow)
    • Priority: Major
    • Resolution: Done
    • Affects Version/s: None
    • Fix Version/s: None
    • Labels:

      Description

      It seems that canceling InterProScan Job Configuration after InterProScan is finished generates an exception:

      Exception in thread "AWT-EventQueue-0" java.lang.IndexOutOfBoundsException: Index: 5, Size: 0
      at java.util.ArrayList.rangeCheck(Unknown Source)
      at java.util.ArrayList.get(Unknown Source)
      at com.lorainelab.protannot.model.InterProScanTableModel.getValueAt(InterProScanTableModel.java:90)
      at javax.swing.JTable.getValueAt(Unknown Source)
      at javax.swing.JTable.prepareRenderer(Unknown Source)
      at javax.swing.plaf.basic.BasicTableUI.paintCell(Unknown Source)
      at javax.swing.plaf.basic.BasicTableUI.paintCells(Unknown Source)
      at javax.swing.plaf.basic.BasicTableUI.paint(Unknown Source)
      at javax.swing.plaf.ComponentUI.update(Unknown Source)
      at javax.swing.JComponent.paintComponent(Unknown Source)
      at javax.swing.JComponent.paint(Unknown Source)
      at javax.swing.JComponent.paintChildren(Unknown Source)
      at javax.swing.JComponent.paint(Unknown Source)
      at javax.swing.JViewport.paint(Unknown Source)
      at javax.swing.JComponent.paintChildren(Unknown Source)
      at javax.swing.JComponent.paint(Unknown Source)
      at javax.swing.JComponent.paintChildren(Unknown Source)
      at javax.swing.JComponent.paint(Unknown Source)
      at javax.swing.JComponent.paintChildren(Unknown Source)
      at javax.swing.JComponent.paint(Unknown Source)
      at javax.swing.JComponent.paintChildren(Unknown Source)
      at javax.swing.JSplitPane.paintChildren(Unknown Source)
      at javax.swing.JComponent.paint(Unknown Source)
      at javax.swing.JComponent.paintChildren(Unknown Source)
      at javax.swing.JComponent.paint(Unknown Source)
      at javax.swing.JComponent.paintChildren(Unknown Source)
      at javax.swing.JComponent.paint(Unknown Source)
      at javax.swing.JComponent.paintChildren(Unknown Source)
      at javax.swing.JComponent.paint(Unknown Source)
      at javax.swing.JLayeredPane.paint(Unknown Source)
      at javax.swing.JComponent.paintChildren(Unknown Source)
      at javax.swing.JComponent.paintToOffscreen(Unknown Source)
      at javax.swing.RepaintManager$PaintManager.paintDoubleBuffered(Unknown Source)
      at javax.swing.RepaintManager$PaintManager.paint(Unknown Source)
      at javax.swing.BufferStrategyPaintManager.paint(Unknown Source)
      at javax.swing.RepaintManager.paint(Unknown Source)
      at javax.swing.JComponent.paint(Unknown Source)
      at java.awt.GraphicsCallback$PaintCallback.run(Unknown Source)
      at sun.awt.SunGraphicsCallback.runOneComponent(Unknown Source)
      at sun.awt.SunGraphicsCallback.runComponents(Unknown Source)
      at java.awt.Container.paint(Unknown Source)
      at java.awt.Window.paint(Unknown Source)
      at javax.swing.RepaintManager$4.run(Unknown Source)
      at javax.swing.RepaintManager$4.run(Unknown Source)
      at java.security.AccessController.doPrivileged(Native Method)
      at java.security.ProtectionDomain$1.doIntersectionPrivilege(Unknown Source)
      at javax.swing.RepaintManager.paintDirtyRegions(Unknown Source)
      at javax.swing.RepaintManager.paintDirtyRegions(Unknown Source)
      at javax.swing.RepaintManager.prePaintDirtyRegions(Unknown Source)
      at javax.swing.RepaintManager.access$1300(Unknown Source)
      at javax.swing.RepaintManager$ProcessingRunnable.run(Unknown Source)
      at java.awt.event.InvocationEvent.dispatch(Unknown Source)
      at java.awt.EventQueue.dispatchEventImpl(Unknown Source)
      at java.awt.EventQueue.access$500(Unknown Source)
      at java.awt.EventQueue$3.run(Unknown Source)
      at java.awt.EventQueue$3.run(Unknown Source)
      at java.security.AccessController.doPrivileged(Native Method)
      at java.security.ProtectionDomain$1.doIntersectionPrivilege(Unknown Source)
      at java.awt.EventQueue.dispatchEvent(Unknown Source)
      at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source)
      at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source)
      at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source)
      at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
      at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
      at java.awt.EventDispatchThread.run(Unknown Source)

        Attachments

          Activity

          mason Mason Meyer (Inactive) created issue -
          mason Mason Meyer (Inactive) made changes -
          Field Original Value New Value
          Epic Link IGBF-497 [ 15559 ]
          mason Mason Meyer (Inactive) made changes -
          Summary Canceling InterProScan Job Configuration after InterProScan is finished genreated an exception Canceling InterProScan Job Configuration after InterProScan is finished genreates an exception
          mason Mason Meyer (Inactive) made changes -
          Summary Canceling InterProScan Job Configuration after InterProScan is finished genreates an exception Canceling InterProScan Job Configuration after InterProScan is finished generates an exception
          tmall Tarun Mall (Inactive) made changes -
          Status Open [ 1 ] In Progress [ 3 ]
          tmall Tarun Mall (Inactive) made changes -
          Assignee Tarun Mall [ tmall ] Mason Meyer [ mason ]
          mason Mason Meyer (Inactive) made changes -
          Status In Progress [ 3 ] Testing In Progress [ 10003 ]
          mason Mason Meyer (Inactive) made changes -
          Status Testing In Progress [ 10003 ] Needs Testing [ 10002 ]
          mason Mason Meyer (Inactive) made changes -
          Status Needs Testing [ 10002 ] Testing In Progress [ 10003 ]
          Hide
          mason Mason Meyer (Inactive) added a comment -

          The story is no longer reproducible so it will now be closed.

          Show
          mason Mason Meyer (Inactive) added a comment - The story is no longer reproducible so it will now be closed.
          mason Mason Meyer (Inactive) made changes -
          Resolution Done [ 10000 ]
          Status Testing In Progress [ 10003 ] Closed [ 6 ]
          jeckstein John Eckstein (Inactive) made changes -
          Resolution Done [ 10000 ]
          Status Closed [ 6 ] Open [ 1 ]
          jeckstein John Eckstein (Inactive) made changes -
          Labels ProtAnnot
          jeckstein John Eckstein (Inactive) made changes -
          Resolution Done [ 10000 ]
          Status Open [ 1 ] Closed [ 6 ]
          ann.loraine Ann Loraine made changes -
          Workflow Loraine Lab Workflow [ 16296 ] Fall 2019 Workflow Update [ 19624 ]
          ann.loraine Ann Loraine made changes -
          Workflow Fall 2019 Workflow Update [ 19624 ] Revised Fall 2019 Workflow Update [ 21743 ]

            People

            • Assignee:
              mason Mason Meyer (Inactive)
              Reporter:
              mason Mason Meyer (Inactive)
            • Votes:
              0 Vote for this issue
              Watchers:
              Start watching this issue

              Dates

              • Created:
                Updated:
                Resolved: