Uploaded image for project: 'IGB'
  1. IGB
  2. IGBF-899

ProtAnnot gene models with no CDS Start/End may contain Protein Sequence in Selection Info

        Details

        • Type: Bug
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:

          Description

          I noticed that gene models with no CDS start or end that are displayed in ProtAnnot still show a protein sequence in ProtAnnot's selection info once the model is selected.

          View screenshot to see a description of the problem.

          This should be examined to see why this is being displayed.

            Attachments

              Activity

              Descending order - Click to sort in ascending order
              Hide
              Permalink
              mason Mason Meyer (Inactive) added a comment -

              Testing for this issue included verifying that gene models with no CDS start/end contained the text "No translation for this gene model" in the properties tab of ProtAnnot when the gene model was selected.

              I also checked to verify that gene models which do have a CDS start/end still contained the proper protein sequence in the properties tab of ProtAnnot.

              Since this issue is resolved it will now be closed.

              Show
              mason Mason Meyer (Inactive) added a comment - Testing for this issue included verifying that gene models with no CDS start/end contained the text "No translation for this gene model" in the properties tab of ProtAnnot when the gene model was selected. I also checked to verify that gene models which do have a CDS start/end still contained the proper protein sequence in the properties tab of ProtAnnot. Since this issue is resolved it will now be closed.
              Hide
              Permalink
              mason Mason Meyer (Inactive) added a comment - - edited

              It has been decided that we should simply replace the protein sequence from selection info with the text "No translation for this gene model" for gene models with no CDS start or end.

              Show
              mason Mason Meyer (Inactive) added a comment - - edited It has been decided that we should simply replace the protein sequence from selection info with the text "No translation for this gene model" for gene models with no CDS start or end.

                People

                • Assignee:
                  mason Mason Meyer (Inactive)
                  Reporter:
                  mason Mason Meyer (Inactive)
                • Votes:
                  0 Vote for this issue
                  Watchers:
                  Start watching this issue

                  Dates

                  • Created:
                    Updated:
                    Resolved: