Details
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Type:
Bug
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Status: Closed (View Workflow)
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Priority:
Minor
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Resolution: Fixed
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Labels:None
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Environment:
URL: https://genoviz.svn.sourceforge.net/svnroot/genoviz/branches/igb_6_5
Repository Root: https://genoviz.svn.sourceforge.net/svnroot/genoviz
Repository UUID: 02abc639-694f-0410-96dc-a5594cd59667
Revision: 8134
Node Kind: directory
Schedule: normal
Last Changed Author: hiralv
Last Changed Rev: 8134
Last Changed Date: 2011-05-12 16:40:41 -0400 (Thu, 12 May 2011)URL: https://genoviz.svn.sourceforge.net/svnroot/genoviz/branches/igb_6_5 Repository Root: https://genoviz.svn.sourceforge.net/svnroot/genoviz Repository UUID: 02abc639-694f-0410-96dc-a5594cd59667 Revision: 8134 Node Kind: directory Schedule: normal Last Changed Author: hiralv Last Changed Rev: 8134 Last Changed Date: 2011-05-12 16:40:41 -0400 (Thu, 12 May 2011)
Description
The display name is incorrectly displayed. Everything before the last "." character should appear as part of the display name.
To repeat:
(0) Reset prefs to default
(1) Run IGB and choose genome version A_thaliana_Jun_2009
(2) Add these two data sets:
http://transvar.org/illumina/tophat_3_processed/CoolHT2.sm.bam
http://transvar.org/illumina/tophat_3_processed/CoolHT2.mm.bam
(Note: difference in file name is "sm" or "mm" - stands for multi versus single mapping reads)
(3) Observe two tracks appear, but the names are both CoolHT2. They should be CoolHT2.sm and CoolHT2.mm
Attachments
Activity
This bug fixed.
After import 2 data files. It will display CoolHT2.mm and CoolHT2.sm in pref.
Katy, please just test this one
Passed Windows v11948
Files no longer exist (404 not found).
Please post files again.
Tested mm and sm files from http://igbquickload.org/quickload/A_thaliana_Jun_2009/cold_stress/
for cold_treament.mm.bam and cold_treatment.sm.bam and IGB 7.0(13526) loaded:
cold_treatment.mm.bam
RNA-Seq/Loraine Lab/Mixed Cold/SM/Reads/Cold, alignments (file dragged in was cold_treatment.sm.bam)
Appears to Pass
Fixed on trunk in 8136.