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  1. Bugs That Are No Longer Relevant
  2. OLD-46

File type check while loading from bookmarks.

          Details

          • Type: Bug
          • Status: Closed (View Workflow)
          • Priority: Major
          • Resolution: Fixed
          • Labels:
            None

            Description

            Bookmarks does not check if file type is supported in IGB or not.

            1. Open IGB to homo sapiens, chr20. In plug in panel, activate the VCFHandler plug in.

            2. Download BOTH attached files to desktop. Load only the main file (NOT the .tbi) - it does NOT need to be unzipped. Click load data.

            3. Make a bookmark. Close but do NOT reset IGB.

            4 Reopen IGB, in the plug-in panel, unclick VCFHandler. Double click bookmark. See that it reports that IGB does not recognize the file type.

            5. Reactivate the VCFHandler plugin. Double click the bookmark. Everything should load without problems.

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                richard Richard Linchangco (Inactive) added a comment -

                VCFHandler plugin NO LONGER EXISTS in IGB 7.0 (V.13526).

                Passed V.13526, Mac, Java 1.06.0_37

                Tested bookmarking .vcf file, closing IGB, and repoening bookmark and no issues occurred.

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                richard Richard Linchangco (Inactive) added a comment - VCFHandler plugin NO LONGER EXISTS in IGB 7.0 (V.13526). Passed V.13526, Mac, Java 1.06.0_37 Tested bookmarking .vcf file, closing IGB, and repoening bookmark and no issues occurred.
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                alyssa Alyssa Gulledge (Inactive) added a comment -

                IGB reports that the file type is not supported (twice) but then loads the other files. Console reports warnings but no errors.

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                alyssa Alyssa Gulledge (Inactive) added a comment - IGB reports that the file type is not supported (twice) but then loads the other files. Console reports warnings but no errors.
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                hiralv Hiral Vora (Inactive) added a comment -

                Fixed in r8878.

                Check if combination of supported and unsupported file works or not.

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                hiralv Hiral Vora (Inactive) added a comment - Fixed in r8878. Check if combination of supported and unsupported file works or not.

                  People

                  • Assignee:
                    Unassigned
                    Reporter:
                    hiralv Hiral Vora (Inactive)
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                    Dates

                    • Created:
                      Updated:
                      Resolved: