Details
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Type:
Bug
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Fixed
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Labels:None
Description
Open a BAM file; do not load sequence. Open sliced view. Zoom in until you can see the actual sequence on the reads. Double click/select a read that is in a relatively deep stack (>20 reads) but set the read depth to 10. There is a very good chance that the selected read does NOT appear in the sliced view because it gets incorporated into the summary/collapsed line of reads that the top of the frame. Also notice that the reads showing in the zoomed in main view are NOT the same set of reads being shown in the sliced view - all of this is due to read packing.
Sourceforge# 3046549
**editted to refine the problem (original issue was that the sequence of a selected read is not appearing in the sliced view.)