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  1. Bugs That Are No Longer Relevant
  2. OLD-90

Color adjustments made in Data Management Table OR Pref -> Tracks cause errors

    Details

    • Type: Bug
    • Status: Closed (View Workflow)
    • Priority: Major
    • Resolution: Fixed
    • Labels:
      None
    • Environment:

      Windows 9915

      Description

      This is a Windows error, not a Mac error.

      Load A_thaliana_Jun_2009
      Click 'Sample BAM file' under IGB quickload >RNA-Seq in Data Sources panel
      Zoom in and load
      Rt click on Sample BAM filetrack label and everything looks fine
      Preferences -> Tracks -> Change FG color of BAM file.
      Color updates but when rt clicking on Sample BAM label again and rt click menu is half gone (attached photo) and the error below is thrown.

      The same error is also thrown when:

      • Any BG or FG color adjustment is made to any track from the 'Track List' table or from the 'Properties' sub panel. This also includes the coordinate track.
      • If color is activated from the 'Show Strand' sub panel
      • If the '+' or '-' colors are adjusted
      • When any BG or FG color adjustment is made to the track default list and then 'Restore to default' is clicked
      • Any BG or FG color adjustment is made to any track listed in the 'Data Management Table'
      • Any color adjustment is made to 'Coordinates' colors, 'Residue Colors', 'ORF Analyzer' Colors, or 'Edge Match' color
      • Any of the above adjustments made to local files (either desktop or URL) will also cause the error.

      There is no error thrown if:

      • Any size adjustment is made to any track from the 'Track List' or 'Properties' sub panels
      • If arrow is checked under the 'Show Strand' sub panel
      • Any BG or FG color adjustment made to any track listed from rt click -> change -> color DOES NOT throw an error.

      Error trace attached as file (it is huge)

        Attachments

          Activity

          Hide
          alyssa Alyssa Gulledge (Inactive) added a comment -

          This seems to be true also for bed files on windows.

          On Mac: there seems to be no problem.

          Show
          alyssa Alyssa Gulledge (Inactive) added a comment - This seems to be true also for bed files on windows. On Mac: there seems to be no problem.
          Hide
          imnick Nick Ren (Inactive) added a comment -

          Fixed in version 10043

          Show
          imnick Nick Ren (Inactive) added a comment - Fixed in version 10043
          Hide
          kkubiak Katharine Kubiak (Inactive) added a comment -

          Passed v10065 Windows

          Show
          kkubiak Katharine Kubiak (Inactive) added a comment - Passed v10065 Windows
          Hide
          fwang4 Fuquan Wang (Inactive) added a comment -

          Passed on 7.0.0 (11997) Windows.

          Show
          fwang4 Fuquan Wang (Inactive) added a comment - Passed on 7.0.0 (11997) Windows.

            People

            • Assignee:
              Unassigned
              Reporter:
              alyssa Alyssa Gulledge (Inactive)
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              Dates

              • Created:
                Updated:
                Resolved: