Details
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Type: Task
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Status: Testing Complete (View Workflow)
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Priority: Major
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Resolution: Done
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Labels:None
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Story Points:1
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Epic Link:
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Sprint:Fall 5 : 14 Oct to 25 Oct
Description
Situation: Samtools HTSJDK requires that a bai file have a bam file with the same name and in the same directory. However, IGB Quickload annots.xml has/had the ability to specify a bam file and index in two separate locations.
Task: Create an example quickload to test the ability of annots.xml to specify a bam and index that exist in two separate folders. Also test if the names of the bam file and index can be different.
Attachments
Issue Links
Activity
Nowlan Freese
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Nowlan Freese
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Field | Original Value | New Value |
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Epic Link |
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Nowlan Freese
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Nowlan Freese
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Status | Open [ 1 ] | To-Do [ 10305 ] |
Nowlan Freese
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Status | To-Do [ 10305 ] | In Progress [ 3 ] |
Nowlan Freese
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Attachment | 854.png [ 14442 ] | |
Attachment | 900.png [ 14443 ] | |
Attachment | 902.png [ 14444 ] | |
Attachment | 910.png [ 14445 ] | |
Attachment | quickloads.zip [ 14446 ] |
Nowlan Freese
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Nowlan Freese
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Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
Nowlan Freese
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Assignee | Nowlan Freese [ nfreese ] | Ann Loraine [ aloraine ] |
Ann Loraine
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Workflow | Fall 2019 Workflow Update [ 20824 ] | Revised Fall 2019 Workflow Update [ 21161 ] |
Ann Loraine
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Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
Ann Loraine
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Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
Ann Loraine
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Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
Ann Loraine
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Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
Ann Loraine
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Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
Ann Loraine
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Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
Ann Loraine
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Resolution | Done [ 10000 ] | |
Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |
Ann Loraine
made changes -
Assignee | Ann Loraine [ aloraine ] | Nowlan Freese [ nfreese ] |
Ann Loraine
made changes -