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    • Type: Task
    • Status: Open (View Workflow)
    • Priority: Major
    • Resolution: Unresolved
    • Affects Version/s: None
    • Fix Version/s: None
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      Description

      Background:

      genome.txt is a tab-delimited file IGB reads and uses to populate the Current Genome tab. When a user selects a species and genome version, IGB reads the genome.txt file.

      When users select rows in the table, IGB should display the corresponding chromosome/sequence in the main view.

      Example genome.txt file: http://igbquickload.org/quickload/A_thaliana_Jun_2009/genome.txt

      Do the following tests. Report results of each test in a separate comment. Attach files used for testing.

      For each test:

      • select chromosomes and observe IGB behavior
      • view console and report any exceptions

      Tests:

      • test what happens if a chromosome name contains a space
      • test what happens if there is a duplicate line in genome.txt
      • test what happens if the same chromosome name is listed twice but with different sizes
      • test what happens if there is a trailing space after the length column
      • test what happens if a non-ASCII (Unicode) character is used in a chromosome name

      Across servers:

      • test what happens if the same genome version is available at two different QuickLoad sites but they report different sizes for the same chromosome name
      • test what happens if the same genome version is available at two different QuickLoad sites but they report different chromosome names
      • test what happens if the same genome version is available at two different QuickLoad sites, the chromsome names and sizes are the same, but the order is different

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              People

              • Assignee:
                ann.loraine Ann Loraine
                Reporter:
                kyle Kyle Suttlemyre (Inactive)
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                • Created:
                  Updated: