Details
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Type: Task
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Status: Open (View Workflow)
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Priority: Major
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Resolution: Unresolved
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
Description
Background:
genome.txt is a tab-delimited file IGB reads and uses to populate the Current Genome tab. When a user selects a species and genome version, IGB reads the genome.txt file.
When users select rows in the table, IGB should display the corresponding chromosome/sequence in the main view.
Example genome.txt file: http://igbquickload.org/quickload/A_thaliana_Jun_2009/genome.txt
Do the following tests. Report results of each test in a separate comment. Attach files used for testing.
For each test:
- select chromosomes and observe IGB behavior
- view console and report any exceptions
Tests:
- test what happens if a chromosome name contains a space
- test what happens if there is a duplicate line in genome.txt
- test what happens if the same chromosome name is listed twice but with different sizes
- test what happens if there is a trailing space after the length column
- test what happens if a non-ASCII (Unicode) character is used in a chromosome name
Across servers:
- test what happens if the same genome version is available at two different QuickLoad sites but they report different sizes for the same chromosome name
- test what happens if the same genome version is available at two different QuickLoad sites but they report different chromosome names
- test what happens if the same genome version is available at two different QuickLoad sites, the chromsome names and sizes are the same, but the order is different
Attachments
Issue Links
- is blocked by
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TEST-16 genome.txt cross QuickLoad different names
- Open
- relates to
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TEST-9 genome.txt: chromosome name contains a space test duplicate line and reload in IGB
- Open
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TEST-11 genome.txt trailing space on line
- Open
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TEST-12 genome.txt trailing tab on line
- Open
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TEST-8 genome.txt chromosome name contains a space
- Open
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TEST-10 genome.txt duplicate line in genome.txt
- Open
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TEST-13 genome.txt extended ASCII test
- Open
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TEST-14 genome.txt Unicode test
- Open
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TEST-15 genome.txt cross QuickLoad different sizes
- Open
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TEST-17 genome.txt cross QuickLoad different sorting
- Open