Details
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Type:
Task
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Status: Open (View Workflow)
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Priority:
Major
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Resolution: Unresolved
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
Description
TODO:
1)Load Large a large data set that has a window size greater than 500,000kb and see if IGB challenges user
2)Use Data management table refresh buttons to see if you are challenged for the appropriate tracks
3)See if files ending in sam.gz sam.gz.tar and others are not being filtered out from challenges.
4)Load a large window from a bookmark
Attachments
Activity
| Field | Original Value | New Value |
|---|---|---|
| Assignee | Kyle Suttlemyre [ kyle ] | Tarun Santosh [ tkanapar ] |
| Summary | Retesting: Stoping Large IGB load... | Retesting: Stopping Large IGB load... |
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- Time Spent:
- 1 hour
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Testing on trunk r16011.
Loading single track BAM > 500kb ... Passed
Tested from data management table ... Passed
Unable to test the bookmark - IGB hangs when I tried to load more than 500 kb.
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- Time Spent:
- 1 hour
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Continued on testing the load feature.
Unable to perform the bookmark as IGB is hanging.
The large data test is for SAM | BAMTest 2:
Selecting a track with less data and a BAM file to be loaded at the same time.
Even after selecting No IGB loads the smaller track. (Expected behavior. We are not keeping the state however its not hanging the IGB by loading the BAM which is good)Further testing by loading more BAM files. IGB doesn't load BAM files when we say no but loads the other files if they were selected
| Remaining Estimate | 0 minutes [ 0 ] | |
| Time Spent | 1 hour [ 3600 ] | |
| Worklog Id | 10311 [ 10311 ] |
| Worklog Id | 10311 [ 10311 ] |
| Time Spent | 1 hour [ 3600 ] | 2 hours [ 7200 ] |
| Worklog Id | 10312 [ 10312 ] |
| Worklog Id | 10312 [ 10312 ] |
| Worklog Id | 10312 [ 10312 ] |
| Worklog Id | 10312 [ 10312 ] |
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- Time Spent:
- 1 hour
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Testing the above cases for branch
r-16011 produced the same results.Pending tests :
On trunk - Bookmark load test
On branch - Bookmark load test
| Time Spent | 2 hours [ 7200 ] | 3 hours [ 10800 ] |
| Worklog Id | 10313 [ 10313 ] |
| Worklog Id | 10313 [ 10313 ] |
| Worklog Id | 10313 [ 10313 ] |
| Worklog Id | 10313 [ 10313 ] |
| Worklog Id | 10313 [ 10313 ] |
Tested on branch and trunk r-16011
All the tests passed as expected.
MAC OS X 10.9.1
Bookmark load data and position. Didn't load the bam data nor did it through request for that.
| Assignee | Tarun Santosh [ tkanapar ] | Ann Loraine [ aloraine ] |
Test Cases:
1. Check the base case by selecting if IGB loads single track BAM > 500kb
2. Test on data management table by clicking on the refresh
3. Load a combination of tracks and refresh.
For case-3 even on combination other tracks will be loaded apart from the BAM/SAM with > 500kb size