IGB link shortcut for testing big read bug

• Start IGB (only one instance)
• Click the link below

IGB will load the Arabidopsis genome and scroll and zoom a location. Then, you can open the test BAM file. Reads should appear in a new track.

Go to region!

BAM file which gives an error when opened in IGB (possibly due to CIGAR string parsing error):

• BAM file (with read alignments)
• BAM index file (put into same folder as BAM file)

The plain text (SAM) version of the BAM file is here:

• Plain text (SAM) version of the BAM file

BAM file which does not give any error when opened in IGB

For your reference, here is a BAM file (with index and plain text SAM version) that does not give any error when opened in IGB. It contains 243 alignments on Chr1 in the region 12,746,479 to 12,748,601.

• BAM file
• BAM index file
• Plain text (SAM) version
• Image File showing alignments in IGB

For more about using IGB links to move around in a genome, see this documentation from the IGB User's Guide.