Found Occurrences
    Usage in string constants
        das  
            org.lorainelab.igb.das.utils  
                DasServerUtils.java  
                    createSaxSource(InputStream)  
                        208 spf.setFeature("http://apache.org/xml/features/nonvalidating/load-external-dtd", false);
                        209 spf.setFeature("http://xml.org/sax/features/validation", false);
        das2  
            org.lorainelab.igb.das2.parser  
                Das2FeatureSaxParser.java  
                    parse(InputSource, String, GenomeVersion, boolean)  
                        217 reader.setFeature("http://xml.org/sax/features/validation", false);
                        218 reader.setFeature("http://apache.org/xml/features/validation/dynamic", false);
                        219 reader.setFeature("http://apache.org/xml/features/nonvalidating/load-external-dtd", false);
                    writeAnnotations(Collection<? extends SeqSymmetry>, BioSeq, String, OutputStream)  (1 usage found)
                        667 pw.println("    xmlns:xlink=\"http://www.w3.org/1999/xlink\" ");
                    71 public static final String DAS2_NAMESPACE = "http://biodas.org/documents/das2";
            org.lorainelab.igb.das2.utils  
                Das2ServerUtils.java  
                    createSaxSource(InputStream)  
                        111 spf.setFeature("http://apache.org/xml/features/nonvalidating/load-external-dtd", false);
                        112 spf.setFeature("http://xml.org/sax/features/validation", false);
        externalView  
            com.affymetrix.igb.external  
                UCSCLoader.java  
                    getUrlForView(Loc, int)  
                        32 return "http://genome.ucsc.edu/cgi-bin/hgTracks?" + width + "db=" + loc.db + "&position=" + loc.chr + ":" + loc.start + "-" + loc.end;
                    27 private static final String fileNameBaseUrl = "http://genome.ucsc.edu/trash/hgt/";
                    28 private static final String sideNameBaseUrl = "http://genome.ucsc.edu/trash/hgtSide/";
                UCSCView.java  
                    UCSCHelper(Window, String)  
                        96 "http://g
                        127 ucscInfo.addActionListener(e -> GeneralUtils.browse("http://genome.ucsc.edu/cgi-bin/cartDump"));
                UCSCViewAction.java  
                    51 private static final String UCSC_DAS_URL = "http://genome.cse.ucsc.edu/cgi-bin/das/";
                    52 private static final String UCSC_URL = "http://genome.ucsc.edu/cgi-bin/hgTracks?";
        feedback  
            org.lorainelab.igb.feedback  
                FeedbackMenuProvider.java  
                    37 private static final String BIOVIZ_HELP_PAGE = "http://bioviz.org/igb/help.html";
        genometry  
            com.affymetrix.genometry.event  
                ReportBugAction.java  
                    actionPerformed(ActionEvent)  
                        36 GeneralUtils.browse("http://sourceforge.net/p/genoviz/bugs/");
            com.affymetrix.genometry.util  
                XMLUtils.java  
                    nonValidatingFactory()  
                        34 setFeature(factory, "http://xml.org/sax/features/validation");
                        35 setFeature(factory, "http://apache.org/xml/features/validation/dynamic");
                        36 setFeature(factory, "http://apache.org/xml/features/nonvalidating/load-external-dtd");
        igb 
            com.affymetrix.igb  
                IGB.java  
                    105 private static final String COUNTER_URL = "http://www.igbquickload.org/igb/counter";
            com.affymetrix.igb.action  
                DocumentationAction.java  
                    actionPerformed(ActionEvent)  
                        41 GeneralUtils.browse("http://wiki.transvar.org/confluence/display/igbman");
                RequestFeatureAction.java  
                    actionPerformed(ActionEvent)  
                        42 GeneralUtils.browse("http://sourceforge.net/p/genoviz/feature-requests/");
            com.affymetrix.igb.stylesheet  
                Stylesheet.java  
                    appendXML(String, StringBuffer)  
                        138 sb.append(indent).append("<IGB_STYLESHEET\n").append(indent).append("version='0.1\'\n").append(indent).append("dtd='http://genoviz.sourceforge.net/formats/stylesheets/igb_stylesheet_0_1.dtd' "
            com.affymetrix.igb.util  
                BugOrFeatureRequestForm.java  
                    16 private static String URL = "http://bioviz.org/bugreporter/report";
        igb-project  
            developmentPlugins\NCBIPrimer\src\main\java\apollo\analysis  
                RemotePrimerBlastNCBI.java  
                    28 private static final String PRIMER_BLAST_URL = "http://www.ncbi.nlm.nih.gov/tools/primer-blast/primertool.cgi";
            optionalPlugins\protannot\src\main\java\org\lorainelab\igb\protannot  
                ProtAnnotAction.java  
                    checkArguments(String, String)  
                        883 + "\n eg. http://protannot.bioviz.org/samples/");
                    getAboutAction()  
                        1471 + "http://www.bioviz.org/protannot\n";
                    build_url(Properties)  
                        1576 return "http://www.ebi.ac.uk/interpro/entry/" + val;
                        1584 return "http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=nucleotide&list_uids=" + val + "&dopt=GenBank";
                ProtAnnotService.java  
                    showSetupModal()  
                        475 Desktop.getDesktop().browse(new URI("http://www.ebi.ac.uk/interpro/about.html"));
            optionalPlugins\protannot\src\main\java\org\lorainelab\igb\protannot\interproscan  
                InterProscanServiceRest.java  
                    48 private static final String INTERPROSCAN_BASE_URL = "http://www.ebi.ac.uk/Tools/services/rest/iprscan5";
                InterProscanTranslator.java  
                    generateUrlFromAc(String)  
                        160 return new URL("http://www.ebi.ac.uk/interpro/entry/" + ac);
                        162 return new URL("http://www.google.com/search?q=" + ac);
            optionalPlugins\protannot\src\main\java\org\lorainelab\igb\protannot\interproscan\model  
                ObjectFactory.java  
                    createNucleotideSequenceMatches(NucleicAcidMatchesType)  
                        431 @XmlElementDecl(namespace = "http://www.ebi.ac.uk/interpro/resources/schemas/interproscan5", name = "nucleotide-sequence-matches")
                    createProteinMatches(ProteinMatchesType)  
                        440 @XmlElementDecl(namespace = "http://www.ebi.ac.uk/interpro/resources/schemas/interproscan5", name = "protein-matches")
                    createNucleotideSequence(NucleotideType)  
                        449 @XmlElementDecl(namespace = "http://www.ebi.ac.uk/interpro/resources/schemas/interproscan5", name = "nucleotide-sequence")
                    createSignature(SignatureType)  
                        458 @XmlElementDecl(namespace = "http://www.ebi.ac.uk/interpro/resources/schemas/interproscan5", name = "signature")
                    createInterproRelease(ReleaseType)  
                        467 @XmlElementDecl(namespace = "http://www.ebi.ac.uk/interpro/resources/schemas/interproscan5", name = "interpro-release")
                    createProtein(ProteinType)  
                        476 @XmlElementDecl(namespace = "http://www.ebi.ac.uk/interpro/resources/schemas/interproscan5", name = "protein")
                    createSignatureLibraryRelease(SignatureLibraryReleaseType)  
                        485 @XmlElementDecl(namespace = "http://www.ebi.ac.uk/interpro/resources/schemas/interproscan5", name = "signature-library-release")
                    createEntry(EntryType)  
                        494 @XmlElementDecl(namespace = "http://www.ebi.ac.uk/interpro/resources/schemas/interproscan5", name = "entry")
                    createOrf(OrfType)  
                        503 @XmlElementDecl(namespace = "http://www.ebi.ac.uk/interpro/resources/schemas/interproscan5", name = "orf")
                    34 private final static QName _NucleotideSequenceMatches_QNAME = new QName("http://www.ebi.ac.uk/interpro/resources/schemas/interproscan5", "nucleotide-sequence-matches");
                    35 private final static QName _ProteinMatches_QNAME = new QName("http://www.ebi.ac.uk/interpro/resources/schemas/interproscan5", "protein-matches");
                    36 private final static QName _NucleotideSequence_QNAME = new QName("http://www.ebi.ac.uk/interpro/resources/schemas/interproscan5", "nucleotide-sequence");
                    37 private final static QName _Signature_QNAME = new QName("http://www.ebi.ac.uk/interpro/resources/schemas/interproscan5", "signature");
                    38 private final static QName _InterproRelease_QNAME = new QName("http://www.ebi.ac.uk/interpro/resources/schemas/interproscan5", "interpro-release");
                    39 private final static QName _Protein_QNAME = new QName("http://www.ebi.ac.uk/interpro/resources/schemas/interproscan5", "protein");
                    40 private final static QName _SignatureLibraryRelease_QNAME = new QName("http://www.ebi.ac.uk/interpro/resources/schemas/interproscan5", "signature-library-release");
                    41 private final static QName _Entry_QNAME = new QName("http://www.ebi.ac.uk/interpro/resources/schemas/interproscan5", "entry");
                    42 private final static QName _Orf_QNAME = new QName("http://www.ebi.ac.uk/interpro/resources/schemas/interproscan5", "orf");
            optionalPlugins\protannot\src\main\java\org\lorainelab\igb\protannot\model  
                InterProScanTableModel.java  
                    131 private static final String BASE_URL = "http://www.ebi.ac.uk/Tools/services/rest/iprscan5/result/";
                ProtannotParser.java  
                    addDescriptorsToMrna(SeqSymmetry, MRNA)  
                        267 mrna.addDescriptor("URL", "http://www.google.com/search?q=" + ((BasicSeqSymmetry) sym).getID());
        quickload  
            org.lorainelab.igb.quickload.util  
                AnnotsParser.java  
                    createSaxSource(InputStream)  
                        60 spf.setFeature("http://apache.org/xml/features/nonvalidating/load-external-dtd", false);
                        61 spf.setFeature("http://xml.org/sax/features/validation", false);