name: m54316_180629_192220/33816739/ccs
id: m54316_180629_192220/33816739/ccs
chromosome: chr2
start: 110,421,099
end: 110,411,979
length: 9,120
average quality: -32
residues: GTTAAGCTAAGAGTTTAAGGCCCTGAGCTTAGCATTTTTTTCCCTTTTCATTATGAGCTCTCTAGTACATGAAGAAGCCAGCCCTTCTTCATTACTACCATATCCATCATTACTGCCATACGCCTCGTTACTACCACACCCATCTAGTGCAGCAGCTGCTTATGTCCCAAAGCCTTGCTTTTCACTAGCCCTTCACTGAAAGCAAAGATGACAATTTAAGTCATTGTGATATCATAGAATTGATAGAGCTCATCACTGCTTTCAAGCTCAAATACATAAGCAATCCCAGAATTCCTTGGACTGCTTCTGGGATCATGACTTATGCCAGTTAGGAACCAATCAGGGCAGGGAATACACCTGAGGCTGAACAGACACATCTGGCATAGGAATGGGGCACACAGTTTGCACTTGACGACTTACCAGCTGGGTAATCCTTGGAATGTGGCGTGACCTCTCAGAGTGCTCTAATTTGTAAAGGGAGGTGATCTTATTTCTTTTCTTTTCTTTTTTTTTTTTTTGAGATGGAGTCTTGCTCAGTCACCCAGGCTAGAGCGCAGTGGCGTGATCTCGGCTCATTGCAACCTCTGCTTCCTGGTTTCAAATGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGCATTACAGGTGCCCACCACCATGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATCTTGGCCAGGCTGATATCGAATTCCCTGACCTCTTGATCCACCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGCACCCGGCTGGTGATCTTTTTTCTCTGTTTTACCAGATATGTCCTGCCAGGTGGCCATGAACTATGTGTCTCCGTTCCCACTGCTTTCAACCACAGTTCTTTGGAACTGGGAGGATGTCAGAACACAGTCGATAGGTGACTGGCCTTGAAGGGCTCTGTCCAGATAGAAAAACTGGTCCAATCAAGTCTCTCACTCAAGAATTGAAATGGGCAAGGCCTGGAAGCTCCTTAGGTTGGGAAAGTTTTGGAGCCATGGATGAGCTGATGAAGAAGCAGAGGTGACTCATGCACAGGAAGAGGATGGGAGGGGAGCAAACTTGGAGGGGCAGAGACTGGGGAGACTGCGGAGACAGTGAGGCCTCCATCGAGGGTCAGCACCCACCCAGTGTGCATTTGGTTCTGCCCTGTTCCTTCACTTGGGTCCCTGAGAGACCCCTGCATCTTTATTTTAAAGCAGAAACAAACAAACAAAAGCAGAAACAATAACAACAAAAAACCCTCCCTTCCACTTGAACTGTTTGTGTGGTCTCTCTTCCTTAAAGCCGAAAGATTCTGGCCTGGGAACAAAAAGAACACGTCTCCTATATCATTGTATTAAATGAGGAAGCTTGTGGGAAAGCCCAGGTGTACTGAAACAAAATAAGCAACTCGTTTTCAGAGTCAGACATCTTAGGGTTCAAATTCTTGGTCTACCACTTATTATCAATCTGGCCCTGGGCAGCTTCACCTCCCTTTGCCTCAGTTTCCTCAACTGTAAAATGAAGATAATTCTATTTGGAATGCCCTTCTAGACCTGTCAGTTTTGATTTGTAAACTGCTAACCATTCTTCTAAGTCTAGTTCAAGTGATATCTCCACAAATCCTAAGTCCCCAGGGGAGTCCCCTCTCTTCCCTGCCTCAGCAGGATGATCCTATTCTGCCCACAGAACACTAATTTACACATCTGCAGTATCTTTGCTACTGCACCATGAGCCACAGCAGGGGCCATGCCAATCCCCCTTATCCCAATCAGGCATGGCAGAGAGCCTCTCTGAGATGAGGTGCTGGATAAATGTTTCTTGAATGAGTAAAGTGTATACCATCCATTGGAACCACATTCTGTCTTTCTTTTAATTTGCAACTCCTTTTCTTAAAATTCTGGGGTTTTTTTGTTGTTTGTTTGAGACAAGGTCTTGCTTTGTCACCCAGGCTGGAGTGAAGTGGCACTATCTTGGCTCACTGCAGCCTCTGCCTCCCAGGTTCAAGCAATTCTCCTGCTTCAGCCTCCAGAGTAGCTGGGATCACAGGCATGTGCCACCATGTCCAGCTAATTTTTTTGTAGTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTTCCAACCTCAGGTGATCCACCCTCCTCGGCCTCCCAAAGTGCTGGGATTATAGGCATGAGCCACCGCACCTGGCCTTTTTCTTAAACATTCTAAGGAAGCGCAGACTGCTCAGGTGCTTATCATATACGATTATGTCTGAAATGTATCTCACATGATAGCAATTATAAAATTAATTTGCCCTTTGGCGTTAATGAATGTCATGTGAGTATTCTGAATTTTCTTCAACTAAAACATTAGTGAATGCAGAATAAGACCTTGAGAAGGAAAAGAGATAAATGGAGAGTAGATGAAGCACAGTGTACTGAGTCTTCTAAGATGATGAAAATAATTTAGAAAAAGTAGGGCGGTTCATAGAAGAAATCAACAGCCCCCAATGGAGAAGGGAAAAATGCAGATGGTAAAAATTAACTATAGAATGGGGACAATATTCTGGCCCATTATTTCAACAATTGGGCCAAGAAAATCCATGATATGATTGGAAATATGAAGTCATTTCAGTCAATTAGAAACAACCTCTGGATTCCCTAATTTCATGAATGGCCCAACCCTAGTATCACCTGAGTGCCCAACGGTTATTGACTCTGCTCTGTGGGGGACAGGCCAACATCCTTGCATTTCAACATGCCAGACACACTTTGGGAGGCTAAGGCAGGCAGACTGCTTGAGGTCAGGAGTTTGAGACCATCCCAGGCAACATGGAGAAACTCGTTTCTACAAAAAAATACAAAAAACTAGCCAGGTGTGGTGGTGTGTGCCTGTAGTCCCAGGTACCCAGGAGGCTGAGGTGGAGGATCACCTGAGCCCAGGAGGTTGAGGCTGCAGTGAACCGTGATTGTGCCACCAAACTCCAGCCTGGGCAACGGAGTGAGACCCTGTCTCAAAAAACAAACAAAAGCAAAAACATGGCAGACAGCTGGTTTATGAAGCAGAATTAGGATGTTCCCAACCATGTTTTCTATATTCTCATAGAGAGAAAATTATAAAAGTGTAATATTTATTTTAAGTTGGAGTGAAGTTTAAATTGGCTATAAATTCCTCAGTTGCATTTAACTAGGAATAAGATTAATATCTTTTAAGCGGGAGGAGGCAATACATTCCCAGAGGAAACTGAACCGATGGAAAGCTCCACAGGCATGAATTAGCTGAGTTTTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTCACTCTGTTGCCCAGGCTGGAGTGCAATGGCACAATCTTGGCTCACTGCAACCTCCTCCTCCTGGGCTCAAGTGATTCTCGTGCCTCAGCCTTCTCAGTAGCTGGTATTACAGGCACGCACCACCAGGCCTGGCTAATTTTTGTATTTTTAGTGGAGAAGGGGTTTAACGCTATTGGCCAGGCTGGTCTCGAACTTCTGACTTCAAGTGATCCGCCTGCCTCAGCATCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGTGCCGGGCCTGAGTTTGTTATTATAATAGTTATTTGATGTGGAGGTCTCACCCAAGTTCATAACTTTGAAATTAGGCTGCATCAGAGTTCACGTATAGAACCTGATTCTCACTTTTTTCCTCAATTTAATGATTTCATTCTTAATAGGTATAAATCAGCCGGGGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGAGAGGCCAAGGTGGGTGGATCACAAGGTCAGGAATTCGAGACCAGCCTGGCCAAGATGGTGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCAGGCATGGTGGCAGGCACAATCCCAGCTACTCGAGAGGCTGAGGCAGAGAATTGCTTAGAACTCGGAGGCAGAGGTTGTAGTGAGCCAAGATCATGCCACGGCACTCCAGCCTGGGTGATGAGCAAGACTCCATCTCAAAAAAAAAAAGAAAAAGATATAAATCAGAACCACAATATTCTCTTTTTATTTAAACAGACACCACGATATCTAGAGATAAGATCCTTTCAGAACAAGGTTGACTCGTGGGAAAGGATCTTATTAAAACCATTCAGAAATTGGCAAATGACATCAGTGATATTCCAAGAAGGAAATTAGTTAAGAAAATTCAATAAACTCTGGCCAGGCACAGTAGCTCATGCCTGTAATCCCAGCACTTTGGGAGACTGAGGGGGGCCAGATCACGAGGTCAGGAGTTTGAGAACAGAACAGCCTGGCCAACATTGGGAAACCCCGTCTCTACTAAAGAAACAAAAAAATTGGCCAGGCACGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAGATGGGTGGATCACGAGGTCAGGAGTTCGAGACTAGCCTGGCCAACATGGTGAAACCCTGTCTCTGCTAAAAATACAAAAACTAGCTGGGTGTGGTGATGAGTACCTGTAATCCCAGCTGCTTGGGAGTCTGAGGCATGAGAATGGCTTGAACTCAGGAGGCAGAGGCTGCAGTAAGCCAAGATCACGCCATTGCACTCCAGCCTGGGTGACAGGGCGAGACTCCGCCCCCCCGCCAAAAAATAAATCAAATAAACTCACAGCCAAGCGCAGTGGCTTATGCCTGTAAGCCCAGCACTTTGGGAGGTCAAGTTGGTTGAATTACGTGAGGTCAGGAGTTTGAGACCAGCATGGCCAACACGGCGAAACCCCATCTCTACTAAAAGTACAAAAACTAGCTGGGCGTGGTGGTGTGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATTGCTTGCCTGGGAGGCAGAGGTCGCAGTGAGCCAAGATCACGCCATTGCACTCCAGCCTGGGTGACAGAGATTTCATCCCCCCCAAAAACACACACAAAAAAACAAAAAAAACAAAACTCAAATAACAGCACCCCCGTGGCCCCAGGCTCCTTTCCATCTCAATTGGAGCCCTGTCTTCCTGTGGGGGATGTACTGTGATTTATCCAGGGCTGCAGTGCAGGTGGTCAGTGGTTCGCATGGACGGTGAGAGCAGCTGTGGGTGGGACAGATGGTGGGCTAGGCTGGGGGCTGGACAGCCCCTGCAGCAGCTGCTGAGCAGAAGGAAGATTTTGTCTGGCAGACAAATCTGAAAGCCCAGGGCCAGAGCAAAAACAATTCCTAGGTTAGAAAAGAAAACAAATCAGCAGGGGGCTCCAGATGAGGTATGGACTCTGAGGGGGCCGCGGGGCCGGGAGCCCTGAATGAGAGTGCTGTCTCTAGGCCCCCAGCCTACGATTCCTAGAAGGGGAACAGCAGCAAAGCAAATCTCCAGTCTGGGAGGGCTGATGGTCCAGGCAGCCAGGCCCCGGCCAGGTATGAGGGTTGGACACCAGCTATGGCTCAGTCTCAGGCACAAGCAAATGCCCAGATAGCAAAGTTGGGGCACAAGATAGGGGCCCATGCTGAGCAGCAGGTGCTGAGCTGTTGTCTCAGGCTGGGGTCAGTCCCAGTGAGGCAGGAGAATAAGGCCTGGAGGCAAAGAACTAAGGCCAATTTGTGCTTATTTCCTAGAAATGAATCAAAAGGAAAACCCCACTTCTCCACACCCAATTAGGGAAAGGATCAGAAGCTACTCCCTTTGTACTGTGTCACAAATGAAAAATGGAACGTTCCTCTGATTTTCCCTTCCTGCAACCAATCAGACTAGTTGGGCCAAGTCTTCATGTATAACTTTGTACTTCACTTCAGCCTCTGATTGGTCACCTCCTGCAACCAATCAGGCTGATTGTAGGCCAAGTCTTCATTTACATAGGGTGTAACCAAGTAACCAATGGGACATGTCTAGAGGGTGTTTACACCCCAGAAAACTCTGTAACCAGTTCTCTGAGCCACTTGCTGCATCCTGATCCCACTCTGTGGAGTGTACTTTCCTTTCAATAAATCTCTGCTTTTATTGCTTCATTCTTTCATTGCATTGTGTGTTTTGTCCAATTTGCTCAAAACACCAAGAACCTGGATGACTCATAGTCAAGACCCTCCACCAGTAACACCAGAAAAACAAAGGGAGGAAAGCTGAGCCTACAGGGAGGCATCAAGTAGTCCCCATGCCAGGAGGCAGATGGGGGACTGCTGGATGAGTAGCCAGTTGGCCTGGTGTGGCCCAGGGAGGGGCTGACGGCTGCCAGGAGCCTGAGCCGCAGAGTGCTGGTTCTGCCACCACATGACCTTAGCCAAATCTCTTGGAACCTCATTTTAATTTTCTGAAAAACAGTGATAATAACTTCAACTCCTCCTAACAGTCTGGGTTAAGGTGTCAGTTTCCTTCCCCAGCTCCTGGTGATCCATCTGGCCCTTGGGTGTAGAGAAGGTGCTAGCTGAGTGTCTGTCTTAAGCACTCTTCTCTCATTTTGTGCTTTCTCCTGAATTATCTCTACTCCTATAGCTACAGCTCTAGCTTGACCTCTGTTTCAGACCTCAATGTACTAATTAGGCATCCTTAGGTTAGTTAGGGTTGGCTTATCTGCTAAAACAGATATATGATAAAATAGATAATGGCCTGAACACAAAGGCAATGTATTTCCTGCTCAGCTAAAAAGCCCAAGGCTAATGGGCAGAGGGACTCTCTTCCATGCAGTCACTTAGGGACCCAGGTTTATGGAAGCTCTGCCACCTTCAACATGAAGCTTCCTGTTTGCCCTGTCAATGCAGACTAACGGAAGGTGAAGGGGCATGAGGGAGCATTAGTAGAAGGGCTTTTTTTTTTTTTTTCTGAGACGGAGTTTCACCCTGTTGCTCAGGCTGGAGTGCAATGGCACGATCTCAGCTCACTTGCAACCTCCACCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCGCTTGCCACCATGCCTGGCTAATTTTTTGGATCTTTAGTAGAGACAGGGTTTCACCATGTTGGCCAGGCTGCTCTCGAACTCCTGACCTCGTGATCTGCTTGCCTTGGCCTCCCAAAGTGCTGGGATTATAGGCATGAGTCACCGTGCCTGGCCAAGTAGAAGGTTCTATGGGCCAGGAATGGGAGTGTCACAAACTTTTGCTTATATTCCACTGTGGAGATCAGTCATATGGTCATACCTACCTGCAAGGAATACTGGAAAAGGTAGATAAGGGTGAGCCTAGAAAGTGCAAGACATGGGGCACAGTGAGTAGCTGGAAGTCTGCTGCATTTATCCTTGACTTTCAGCTGTCTTCAGGATATATCCCTTGGATGCCCTACAGGTAAACCTGTTCAAAGTCTAACTCATTAATGTCCCCAGTAAAGCCTGCTCCTCCTACTCTATTTCTTCCTCTGGTAATAGTATTATCACCCACCCAGATGCCCAGCTACAAACCTTTGAGTAAGCTTGACTTCTCCCTCTTCCCTAGATCCATCTTCCAGTAAGTTTTTGGTGGTGGCCATAAAGATGCACATTTCATGCCTCCTGCTGCAGGGATCATAATTGGTTGAAGGCCCCAGCTACTGCCCTTCAGGGTCCGTCTCTGTATCTGCTTGCAGACCACCCTTTCCAGACCATGACTGAGCACAAACACCCATTTCTGCCACATGCAGGAGTCTTTCCGAGGGAGACTTTGGCTCAAGGACTCCCCATCGCCTGGCAGAACTTTCTTAGGTCTGTATTGAGTCTGAGACTTTCCTTTGTCCTCCTTCCTTTTCTCTCCTTCACCAAGGTCAGACCTGCATTGCAGTCTGAAAGATCTTCCCACCTTCTCTGGTTCACCCTGTATATTTCTTTCTTTCTTTTTTTAAAAAACAGAGTTTCACTCTTGTCACCCAGGCTGGAGTGCAGTGGCGCGATCTTGGCTCACTACAACCTCTGCCTCCCAGGTTCAAAGGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCACCCGCCACCATGCCTGGCTAATTTTTGTATTTTTAGGAATTTTTGTATTTTATAATTTTGTATATTTAGTAGTAGATTTTGTATTTTGTATTTTTAGCCACCATGCCTGGCTAAATTTTATATTTTTGTGTTTTTAGCCACCATGCCTGGCTAATTCTTGTATTTTTAGGGTTTCATCATGTTGGCTATGCTGGTCTTGAACTCCTGACCTCAGGTGATCTGCCTACCTCAGCTGCCCAAGGTGCTGGGATTATAGGCATTAGCCACCATGCCCGGCCTCACCCTCTATATTTCATAGGTGTTTCCCTCAGTGAATCTCTTGCAAATAAACCTAACTCCTCATTGGTATCTGCTTCTCAGAGGATGTGAACTAAAGCAGTTTTCAAAGTTGTCCTCTTTTCTATTCCCACCGCCTTCTCCCTTGTGCGATTGCCATGGCTTCCTAATGATCCCCTGGCCTCCAATGTGGTTCTTCTCAAGCAGAGCATCTGTACTGCCACAGTGCTCCACTTCCAAAGTAGATATTAACACTCAAGCTGATCAAAAGACTTCCATTGCTTCCACCTGCCATCTATGGAACACACCTGAGTTGCTTGGAACATCATTCAATTTAACCTTCACAATCTCTCCTTGGCCTTGACTCCACCTAGTGTCCTTCCCTCTCCCACACTTGGACAACTAGCTTTCCCTGAAGGTACTTTGTGCTACTCCCTCTACCTGAAATGCTCCCATTGATTTCTCATTCTATCAAAATCCTATTCATATTCATTCATTAGAGCTCAGCTTAAAACCTCCTTCATCCTCAAAGACCTTTTTCCTCCCTCTTGTGGGCTCTCACAGCACTTTGCACATACTCTGTACCTTGTATATCTCTATTTAAGAGCATGTCTATCTCCTCCATTAGCTGGGGATATTTGAGGCAAGGAAGGTGTTTCATTCATTTGTGCATTCATTTCAGCAATCCACTGTGGAGTACCTACTGTGCCCTGCTTCTTGTCCTGGGTGCTGGAAGTAGATCAATAAAACAGATAAAAATTCCTACTCCTGTTGGCTTCTTTCTAGTGTATACCCAATGTTGAGTTGTGCTCTT
strand: -
showMask: true
scores: 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forward: false
mapQ: 60
paired read: no
duplicate: no
supplementary: no
failed qc: no
CIGAR: 126=1X540=1I58=1I297=1D874=1D44=1D136=1X174=1D123=1X489=1D82=1D110=1X18=1I231=1I247=1X359=4D39=1I6=1D73=1I332=1I920=1X472=1D206=1D184=1D537=1I147=1D75=1I1350=1X292=1I44=1X338=1D173=
VN: 0.17
rs: [I@5bc992e7
np: 5
PS: 10576
PU: m54316_180719_115850
HP: 2
DS: Generate circular consensus sequences (ccs) from subreads.
SM: HG002
sn: [F@5735203c
za: 15.949433
m5: 9d47df1972afe81d70dc4e4c59669352
CL: whatshap haplotag --output ../hg19_pbmm2/m54316_180719_115850.Q20.hs37d5.pbmm2.haplotagged_10xTrioRTG.bam --reference /pbi/dept/appslab/datasets/wr_references/hs37d5/this.fasta /pbi/dept/appslab/projects/2018/wr_hg002_data_sharing/from_giab/RTG.hg19.10x.trio-whatshap.vcf.gz ../hg19_pbmm2/m54316_180719_115850.Q20.hs37d5.pbmm2.bam
zm: 33816739
PC: 120
RG: 2e35a871
zs: [F@7012e771
PL: PACBIO
PM: SEQUEL
PN: whatshap
rq: 0.99751914