17:11:25.523 ERROR c.a.genometry.util.GeneralUtils - null
java.net.SocketTimeoutException: Read timed out
	at java.net.SocketInputStream.socketRead0(Native Method) ~[na:1.8.0_152]
	at java.net.SocketInputStream.socketRead(SocketInputStream.java:116) ~[na:1.8.0_152]
	at java.net.SocketInputStream.read(SocketInputStream.java:171) ~[na:1.8.0_152]
	at java.net.SocketInputStream.read(SocketInputStream.java:141) ~[na:1.8.0_152]
	at java.io.BufferedInputStream.fill(BufferedInputStream.java:246) ~[na:1.8.0_152]
	at java.io.BufferedInputStream.read(BufferedInputStream.java:265) ~[na:1.8.0_152]
	at sun.net.ftp.impl.FtpClient.readServerResponse(FtpClient.java:420) ~[na:1.8.0_152]
	at sun.net.ftp.impl.FtpClient.readReply(FtpClient.java:497) ~[na:1.8.0_152]
	at sun.net.ftp.impl.FtpClient.completePending(FtpClient.java:1622) ~[na:1.8.0_152]
	at sun.net.ftp.impl.FtpClient.issueCommand(FtpClient.java:527) ~[na:1.8.0_152]
	at sun.net.ftp.impl.FtpClient.close(FtpClient.java:1131) ~[na:1.8.0_152]
	at sun.net.www.protocol.ftp.FtpURLConnection$FtpInputStream.close(FtpURLConnection.java:130) ~[na:1.8.0_152]
	at com.affymetrix.genometry.util.GeneralUtils.safeClose(GeneralUtils.java:82) ~[genometry-9.0.1.jar:na]
	at com.affymetrix.genometry.util.LocalUrlCacher.isValidURI(LocalUrlCacher.java:731) [genometry-9.0.1.jar:na]
	at com.affymetrix.genometry.util.LocalUrlCacher.isValidURL(LocalUrlCacher.java:689) [genometry-9.0.1.jar:na]
	at com.affymetrix.igb.view.load.BamIndexValidator.findIndexFile(BamIndexValidator.java:68) [igb-9.0.1.jar:na]
	at com.affymetrix.igb.view.load.BamIndexValidator.bamFileHasIndex(BamIndexValidator.java:34) [igb-9.0.1.jar:na]
	at com.affymetrix.igb.view.load.GeneralLoadUtils.handleBam(GeneralLoadUtils.java:1181) [igb-9.0.1.jar:na]
	at com.affymetrix.igb.view.load.GeneralLoadUtils.setVersion(GeneralLoadUtils.java:1143) [igb-9.0.1.jar:na]
	at com.affymetrix.igb.view.load.GeneralLoadUtils.getDataSet(GeneralLoadUtils.java:1081) [igb-9.0.1.jar:na]
	at com.affymetrix.igb.view.load.GeneralLoadUtils.openURI(GeneralLoadUtils.java:968) [igb-9.0.1.jar:na]
	at com.affymetrix.igb.IgbServiceImpl.openURI(IgbServiceImpl.java:341) [igb-9.0.1.jar:na]
	at com.affymetrix.igb.shared.OpenURIAction.openURI(OpenURIAction.java:89) [igb-9.0.1.jar:na]
	at com.affymetrix.igb.shared.LoadURLAction.loadURL(LoadURLAction.java:124) [igb-9.0.1.jar:na]
	at com.affymetrix.igb.shared.LoadURLAction.actionPerformed(LoadURLAction.java:56) [igb-9.0.1.jar:na]
	at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2022) [na:1.8.0_152]
	at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2348) [na:1.8.0_152]
	at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:402) [na:1.8.0_152]
	at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259) [na:1.8.0_152]
	at javax.swing.AbstractButton.doClick(AbstractButton.java:376) [na:1.8.0_152]
	at com.apple.laf.ScreenMenuItem.actionPerformed(ScreenMenuItem.java:125) [na:1.8.0_152]
	at java.awt.MenuItem.processActionEvent(MenuItem.java:669) [na:1.8.0_152]
	at java.awt.MenuItem.processEvent(MenuItem.java:628) [na:1.8.0_152]
	at java.awt.MenuComponent.dispatchEventImpl(MenuComponent.java:357) [na:1.8.0_152]
	at java.awt.MenuComponent.dispatchEvent(MenuComponent.java:345) [na:1.8.0_152]
	at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:761) [na:1.8.0_152]
	at java.awt.EventQueue.access$500(EventQueue.java:97) [na:1.8.0_152]
	at java.awt.EventQueue$3.run(EventQueue.java:709) [na:1.8.0_152]
	at java.awt.EventQueue$3.run(EventQueue.java:703) [na:1.8.0_152]
	at java.security.AccessController.doPrivileged(Native Method) [na:1.8.0_152]
	at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:80) [na:1.8.0_152]
	at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:90) [na:1.8.0_152]
	at java.awt.EventQueue$4.run(EventQueue.java:731) [na:1.8.0_152]
	at java.awt.EventQueue$4.run(EventQueue.java:729) [na:1.8.0_152]
	at java.security.AccessController.doPrivileged(Native Method) [na:1.8.0_152]
	at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:80) [na:1.8.0_152]
	at java.awt.EventQueue.dispatchEvent(EventQueue.java:728) [na:1.8.0_152]
	at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:201) [na:1.8.0_152]
	at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116) [na:1.8.0_152]
	at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105) [na:1.8.0_152]
	at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101) [na:1.8.0_152]
	at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93) [na:1.8.0_152]
	at java.awt.EventDispatchThread.run(EventDispatchThread.java:82) [na:1.8.0_152]