09:02:26.384 WARN o.l.i.quickload.util.QuickloadUtils - Optional quickload synonyms.txt file could not be loaded from http://igbquickload.org/blueberry/synonyms.txt 09:02:26.538 WARN com.affymetrix.igb.IGB - Trying to add set keystroke for action com.affymetrix.igb.action.HomeAction. But action class com.affymetrix.igb.action.HomeAction exists with same keystroke "ctrl pressed H". Using keystroke with latest action. 09:02:26.588 WARN o.l.i.quickload.util.QuickloadUtils - Optional species.txt could not be loaded from: http://igbquickload.org/blueberry/species.txt 09:02:26.597 INFO o.l.i.q.QuickloadDataProvider - Initializing Quickload Server http://igbquickload.org/soyseq/ 09:02:27.081 INFO com.affymetrix.igb.Activator - IGB Started 09:02:27.120 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: org.apache.felix.framework 09:02:27.121 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: affymetrix-common 09:02:27.122 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: annotation-tab 09:02:27.122 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: apollo-library 09:02:27.122 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: appstore 09:02:27.122 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: org.lorainelab.igb.bai 09:02:27.122 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: org.lorainelab.igb.bam 09:02:27.123 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: org.lorainelab.igb.bed 09:02:27.123 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: bigBedHandler 09:02:27.123 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: bigWigHandler 09:02:27.123 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: org.broad.igv.bigwig 09:02:27.123 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: bookmark 09:02:27.123 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: org.lorainelab.igb.cache 09:02:27.124 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: org.lorainelab.igb.cache-api 09:02:27.124 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: org.apache.commons.codec 09:02:27.124 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: org.apache.commons.compress 09:02:27.124 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: org.apache.commons.csv 09:02:27.124 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: org.apache.commons.commons-fileupload 09:02:27.125 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: org.apache.commons.io 09:02:27.125 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: org.apache.commons.jexl 09:02:27.125 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: org.apache.commons.lang3 09:02:27.125 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: org.apache.commons.logging 09:02:27.126 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: org.apache.commons.pool 09:02:27.126 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: console-tab 09:02:27.126 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: context-menu-service 09:02:27.126 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: das 09:02:27.126 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: das2 09:02:27.126 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: org.lorainelab.igb.external-sort 09:02:27.126 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: externalView 09:02:27.127 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: org.lorainelab.igb.feedback 09:02:27.127 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: frameManager 09:02:27.127 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: genometry 09:02:27.127 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: com.affymetrix.genoviz 09:02:27.127 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: graphTab 09:02:27.127 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: com.google.gson 09:02:27.127 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: com.google.guava 09:02:27.127 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: heatmap-editor 09:02:27.128 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: htsjdk-igb 09:02:27.128 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: igb 09:02:27.128 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: igb-genoviz-extensions 09:02:27.128 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: igb-javafx-util 09:02:27.128 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: igb-preferences 09:02:27.128 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: igb-services 09:02:27.128 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: igbScript 09:02:27.128 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: igbSwingExt 09:02:27.129 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: image-exporter 09:02:27.129 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: com.fasterxml.jackson.core.jackson-annotations 09:02:27.129 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: com.fasterxml.jackson.core.jackson-core 09:02:27.129 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: com.fasterxml.jackson.core.jackson-databind 09:02:27.129 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: com.jidesoft.ultimate 09:02:27.129 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: keyWordSearch 09:02:27.129 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: keybinding-registry 09:02:27.130 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: ch.qos.logback.classic 09:02:27.130 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: ch.qos.logback.core 09:02:27.130 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: org.lorainelab.igb.logging-config 09:02:27.130 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: org.lorainelab.igb.narrowpeak 09:02:27.130 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: ncbiBlast 09:02:27.130 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: org.apache.felix.bundlerepository 09:02:27.130 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: org.apache.felix.configadmin 09:02:27.130 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: org.apache.felix.dependencymanager 09:02:27.130 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: org.apache.felix.eventadmin 09:02:27.131 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: org.apache.felix.http.bundle 09:02:27.131 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: org.apache.felix.http.jetty 09:02:27.131 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: org.apache.felix.http.servlet-api 09:02:27.131 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: org.apache.felix.scr 09:02:27.131 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: org.apache.felix.webconsole 09:02:27.131 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: org.lorainelab.igb.error.reporter.api 09:02:27.131 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: org.lorainelab.igb.error.reporter.manager 09:02:27.131 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: org.lorainelab.igb.menu.api 09:02:27.131 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: org.lorainelab.igb.remote.services.commons 09:02:27.132 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: org.lorainelab.igb.remote.services.discovery.provider.configured 09:02:27.132 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: org.lorainelab.igb.remote.services.distribution.provider.http 09:02:27.132 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: org.lorainelab.igb.remote.services.topology.manager 09:02:27.132 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: osgi.cmpn 09:02:27.132 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: org.osgi.service.remoteserviceadmin 09:02:27.132 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: paired-data-preprocessor 09:02:27.132 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: org.lorainelab.igb.plugins-manager 09:02:27.132 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: propertyView 09:02:27.132 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: quickload 09:02:27.133 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: restrictionSites 09:02:27.133 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: searchModelIdOrProps 09:02:27.133 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: searchView 09:02:27.133 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: sequenceViewer 09:02:27.133 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: session-manager 09:02:27.133 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: shared-lib-wrapper 09:02:27.133 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: slf4j.api 09:02:27.133 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: survey 09:02:27.134 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: synonym-lookup 09:02:27.134 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: thresholding 09:02:27.134 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: track-operations-panel 09:02:27.134 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: update 09:02:27.134 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: weblinks 09:02:27.134 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: window-service 09:02:27.134 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: org.tukaani.xz 09:02:27.134 [main] INFO com.affymetrix.main.OSGiHandler - OSGi is started with org.apache.felix.framework version 5.2.0 09:02:27.592 WARN o.l.i.quickload.util.QuickloadUtils - Optional quickload synonyms.txt file could not be loaded from http://igbquickload.org/soyseq/synonyms.txt 09:02:27.786 WARN o.l.i.quickload.util.QuickloadUtils - Optional species.txt could not be loaded from: http://igbquickload.org/soyseq/species.txt 09:02:27.794 INFO o.l.i.q.QuickloadDataProvider - Initializing Quickload Server http://lorainelab-quickload.scidas.org/bar/ 09:02:28.272 WARN o.l.i.quickload.util.QuickloadUtils - Optional quickload synonyms.txt file could not be loaded from http://lorainelab-quickload.scidas.org/bar/synonyms.txt 09:02:28.461 WARN o.l.i.quickload.util.QuickloadUtils - Optional species.txt could not be loaded from: http://lorainelab-quickload.scidas.org/bar/species.txt 09:02:28.464 INFO o.l.i.q.QuickloadDataProvider - Initializing Quickload Server http://lorainelab-quickload.scidas.org/dnaseq/ 09:02:28.949 WARN o.l.i.quickload.util.QuickloadUtils - Optional quickload synonyms.txt file could not be loaded from http://lorainelab-quickload.scidas.org/dnaseq/synonyms.txt 09:02:29.133 WARN o.l.i.quickload.util.QuickloadUtils - Optional species.txt could not be loaded from: http://lorainelab-quickload.scidas.org/dnaseq/species.txt 09:02:29.134 INFO o.l.i.q.QuickloadDataProvider - Initializing Quickload Server http://lorainelab-quickload.scidas.org/chipseq/ 09:02:29.607 WARN o.l.i.quickload.util.QuickloadUtils - Optional quickload synonyms.txt file could not be loaded from http://lorainelab-quickload.scidas.org/chipseq/synonyms.txt 09:02:29.795 WARN o.l.i.quickload.util.QuickloadUtils - Optional species.txt could not be loaded from: http://lorainelab-quickload.scidas.org/chipseq/species.txt 09:02:30.868 INFO o.l.i.appstore.IgbAppServerLauncher - Started REST endpoint. 09:02:38.188 INFO c.a.igb.view.load.GeneralLoadUtils - Loaded RefGene in 632.3 ms Jan 08, 2020 9:04:17 AM com.affymetrix.genometry.quickload.QuickLoadSymLoader logException WARNING: Provider "W" not found java.nio.file.ProviderNotFoundException: Provider "W" not found at java.nio.file.FileSystems.newFileSystem(FileSystems.java:341) at htsjdk.samtools.util.IOUtil.getPath(IOUtil.java:1126) at htsjdk.samtools.seekablestream.SeekableStreamFactory$DefaultSeekableStreamFactory.getStreamFor(SeekableStreamFactory.java:101) at htsjdk.samtools.seekablestream.SeekableStreamFactory$DefaultSeekableStreamFactory.getStreamFor(SeekableStreamFactory.java:77) at com.gene.bigwighandler.BigWigSymLoader.initbbReader(BigWigSymLoader.java:89) at com.gene.bigwighandler.BigWigSymLoader.init(BigWigSymLoader.java:62) at com.gene.bigwighandler.BigWigSymLoader.getChromosomeList(BigWigSymLoader.java:106) at com.affymetrix.genometry.quickload.QuickLoadSymLoader.getChromosomeList(QuickLoadSymLoader.java:254) at com.affymetrix.igb.view.load.GeneralLoadUtils$3.runInBackground(GeneralLoadUtils.java:1010) at com.affymetrix.igb.view.load.GeneralLoadUtils$3.runInBackground(GeneralLoadUtils.java:1000) at com.affymetrix.genometry.thread.CThreadWorker.doInBackground(CThreadWorker.java:73) at javax.swing.SwingWorker$1.call(SwingWorker.java:295) at java.util.concurrent.FutureTask.run(FutureTask.java:266) at javax.swing.SwingWorker.run(SwingWorker.java:334) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) at java.lang.Thread.run(Thread.java:748)