[INFO] Scanning for projects... [INFO] ------------------------------------------------------------------------ [INFO] Reactor Build Order: [INFO] [INFO] IGB Project [pom] [INFO] Core - Heatmap Editor [bundle] [INFO] Core - Affymetrix Common [bundle] [INFO] Plugin - Sorting API and Impl [bundle] [INFO] Plugin - Data caching API [bundle] [INFO] Core - Synonym Lookup [bundle] [INFO] Core - Genometry (Data Models) [bundle] [INFO] Core - Preferences [bundle] [INFO] Core - IGB Swing Extensions [bundle] [INFO] Core - Genoviz Extensions [bundle] [INFO] Core - IGB Services API [bundle] [INFO] Core - Frame Manager [bundle] [INFO] Core - Window Service [bundle] [INFO] Core - JavaFX Utilities [bundle] [INFO] Core - Menu API [bundle] [INFO] Core - Context Menu Service [bundle] [INFO] Core - IGB [bundle] [INFO] Core - Bundle wrapper, deployer [bundle] [INFO] Core - Logging Config [bundle] [INFO] Core - Web Links [bundle] [INFO] Plugin - Data caching GUI [bundle] [INFO] Core - Quickload (data source) [bundle] [INFO] Core - DAS (data source) [bundle] [INFO] Core - Das 2 (data source) [bundle] [INFO] Plugin - Apollo Library [bundle] [INFO] Plugin - Track Operations API, GUI [bundle] [INFO] Plugin - Annotation Tab [bundle] [INFO] Plugin - Console Tab [bundle] [INFO] Plugin - Bigbed data format handler [bundle] [INFO] Plugin - Bigwig data format handler [bundle] [INFO] Plugin - Bookmarks and REST API [bundle] [INFO] Plugin - External View [bundle] [INFO] Plugin - Graph Tab [bundle] [INFO] Plugin - Save Image GUI [bundle] [INFO] Plugin - Script handler [bundle] [INFO] Plugin - Keyword Search [bundle] [INFO] Plugin - NCBI Blast [bundle] [INFO] Plugin - Selection Info tab [bundle] [INFO] Plugin - Restriction Sites tab [bundle] [INFO] Plugin - Search Id or Props [bundle] [INFO] Plugin - Advanced Search Tab [bundle] [INFO] Plugin - Sequence Viewer GUI [bundle] [INFO] Plugin - Survey GUI [bundle] [INFO] Plugin - Graph thresholding visual analytics [bundle] [INFO] Plugin - Update [bundle] [INFO] Plugin - App Manager GUI [bundle] [INFO] Plugin - Paired-end Read Preprocessor [bundle] [INFO] Plugin - Save Session Manager [bundle] [INFO] Plugin - Toolbar Preferences GUI [bundle] [INFO] Plugin - Error reporting [bundle] [INFO] Plugin - Feedback [bundle] [INFO] Plugin - Narrowpeak data format handler [bundle] [INFO] Plugin - File Handler - Genotyping Results [bundle] [INFO] Plugin - BED file format handler [bundle] [INFO] Plugin - BAM data format handler [bundle] [INFO] Plugin - BAI index visualization handler [bundle] [INFO] Plugin - App Store REST API [bundle] [INFO] IGB Main (run me) [jar] [INFO] [INFO] -------------------< org.lorainelab.igb:igb-project >------------------- [INFO] Building IGB Project 9.1.6 [1/58] [INFO] --------------------------------[ pom ]--------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ igb-project --- [INFO] Deleting /home/admin/integrated-genome-browser/bundles (includes = [*.jar, repository.xml], excludes = []) [INFO] Deleting /home/admin/integrated-genome-browser/bundles/dynamic (includes = [*.jar], excludes = []) [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ igb-project --- [INFO] Installing /home/admin/integrated-genome-browser/pom.xml to /home/admin/.m2/repository/org/lorainelab/igb/igb-project/9.1.6/igb-project-9.1.6.pom [INFO] [INFO] -----------------< org.lorainelab.igb:heatmap-editor >------------------ [INFO] Building Core - Heatmap Editor 9.1.6 [2/58] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ heatmap-editor --- [INFO] Deleting /home/admin/integrated-genome-browser/core/heatmap-editor/target [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ heatmap-editor --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] Copying 0 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ heatmap-editor --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 14 source files to /home/admin/integrated-genome-browser/core/heatmap-editor/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ heatmap-editor --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ heatmap-editor --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ heatmap-editor --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ heatmap-editor --- [INFO] [INFO] --- maven-install-plugin:3.0.0-M1:install (default-install) @ heatmap-editor --- [INFO] Installing /home/admin/integrated-genome-browser/core/heatmap-editor/target/heatmap-editor-9.1.6.jar to /home/admin/.m2/repository/org/lorainelab/igb/heatmap-editor/9.1.6/heatmap-editor-9.1.6.jar [INFO] Installing /home/admin/integrated-genome-browser/core/heatmap-editor/pom.xml to /home/admin/.m2/repository/org/lorainelab/igb/heatmap-editor/9.1.6/heatmap-editor-9.1.6.pom [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ heatmap-editor --- [INFO] Installing org/lorainelab/igb/heatmap-editor/9.1.6/heatmap-editor-9.1.6.jar [INFO] Writing OBR metadata [INFO] [INFO] --- maven-dependency-plugin:2.9:copy (copy) @ heatmap-editor --- [INFO] Configured Artifact: org.lorainelab.igb:heatmap-editor:9.1.6:jar [INFO] Copying heatmap-editor-9.1.6.jar to /home/admin/integrated-genome-browser/bundles/heatmap-editor-9.1.6.jar [INFO] [INFO] ----------------< org.lorainelab.igb:affymetrix-common >---------------- [INFO] Building Core - Affymetrix Common 9.1.6 [3/58] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ affymetrix-common --- [INFO] Deleting /home/admin/integrated-genome-browser/core/common/target [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ affymetrix-common --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 285 resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ affymetrix-common --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 4 source files to /home/admin/integrated-genome-browser/core/common/target/classes Note: /home/admin/integrated-genome-browser/core/common/src/main/java/com/affymetrix/common/PreferenceUtils.java uses unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ affymetrix-common --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/admin/integrated-genome-browser/core/common/src/test/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ affymetrix-common --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ affymetrix-common --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ affymetrix-common --- [INFO] [INFO] --- maven-install-plugin:3.0.0-M1:install (default-install) @ affymetrix-common --- [INFO] Installing /home/admin/integrated-genome-browser/core/common/target/affymetrix-common-9.1.6.jar to /home/admin/.m2/repository/org/lorainelab/igb/affymetrix-common/9.1.6/affymetrix-common-9.1.6.jar [INFO] Installing /home/admin/integrated-genome-browser/core/common/pom.xml to /home/admin/.m2/repository/org/lorainelab/igb/affymetrix-common/9.1.6/affymetrix-common-9.1.6.pom [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ affymetrix-common --- [INFO] Installing org/lorainelab/igb/affymetrix-common/9.1.6/affymetrix-common-9.1.6.jar [INFO] Writing OBR metadata [INFO] [INFO] --- maven-dependency-plugin:2.9:copy (copy) @ affymetrix-common --- [INFO] Configured Artifact: org.lorainelab.igb:affymetrix-common:9.1.6:jar [INFO] Copying affymetrix-common-9.1.6.jar to /home/admin/integrated-genome-browser/bundles/affymetrix-common-9.1.6.jar [INFO] [INFO] ------------------< org.lorainelab.igb:external-sort >------------------ [INFO] Building Plugin - Sorting API and Impl 9.1.6 [4/58] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ external-sort --- [INFO] Deleting /home/admin/integrated-genome-browser/plugins/external-sort/target [INFO] Deleting /home/admin/integrated-genome-browser/bundles/dynamic (includes = [external-sort-9.1.6.jar], excludes = []) [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ external-sort --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] skip non existing resourceDirectory /home/admin/integrated-genome-browser/plugins/external-sort/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ external-sort --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 7 source files to /home/admin/integrated-genome-browser/plugins/external-sort/target/classes Note: /home/admin/integrated-genome-browser/plugins/external-sort/src/main/java/org/lorainelab/igb/externalsort/api/ComparatorMetadata.java uses unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ external-sort --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 2 resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ external-sort --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 1 source file to /home/admin/integrated-genome-browser/plugins/external-sort/target/test-classes [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ external-sort --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ external-sort --- [INFO] [INFO] --- maven-install-plugin:3.0.0-M1:install (default-install) @ external-sort --- [INFO] Installing /home/admin/integrated-genome-browser/plugins/external-sort/target/external-sort-9.1.6.jar to /home/admin/.m2/repository/org/lorainelab/igb/external-sort/9.1.6/external-sort-9.1.6.jar [INFO] Installing /home/admin/integrated-genome-browser/plugins/external-sort/pom.xml to /home/admin/.m2/repository/org/lorainelab/igb/external-sort/9.1.6/external-sort-9.1.6.pom [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ external-sort --- [INFO] Installing org/lorainelab/igb/external-sort/9.1.6/external-sort-9.1.6.jar [INFO] Writing OBR metadata [INFO] [INFO] --- maven-dependency-plugin:2.9:copy (copy) @ external-sort --- [INFO] Configured Artifact: org.lorainelab.igb:external-sort:9.1.6:jar [INFO] Copying external-sort-9.1.6.jar to /home/admin/integrated-genome-browser/bundles/dynamic/external-sort-9.1.6.jar [INFO] [INFO] --------------------< org.lorainelab.igb:cache-api >-------------------- [INFO] Building Plugin - Data caching API 9.1.6 [5/58] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ cache-api --- [INFO] Deleting /home/admin/integrated-genome-browser/plugins/cache-api/target [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ cache-api --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] skip non existing resourceDirectory /home/admin/integrated-genome-browser/plugins/cache-api/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ cache-api --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 3 source files to /home/admin/integrated-genome-browser/plugins/cache-api/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ cache-api --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/admin/integrated-genome-browser/plugins/cache-api/src/test/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ cache-api --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cache-api --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ cache-api --- [INFO] [INFO] --- maven-install-plugin:3.0.0-M1:install (default-install) @ cache-api --- [INFO] Installing /home/admin/integrated-genome-browser/plugins/cache-api/target/cache-api-9.1.6.jar to /home/admin/.m2/repository/org/lorainelab/igb/cache-api/9.1.6/cache-api-9.1.6.jar [INFO] Installing /home/admin/integrated-genome-browser/plugins/cache-api/pom.xml to /home/admin/.m2/repository/org/lorainelab/igb/cache-api/9.1.6/cache-api-9.1.6.pom [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ cache-api --- [INFO] Installing org/lorainelab/igb/cache-api/9.1.6/cache-api-9.1.6.jar [INFO] Writing OBR metadata [INFO] [INFO] --- maven-dependency-plugin:2.9:copy (copy) @ cache-api --- [INFO] Configured Artifact: org.lorainelab.igb:cache-api:9.1.6:jar [INFO] Copying cache-api-9.1.6.jar to /home/admin/integrated-genome-browser/bundles/cache-api-9.1.6.jar [INFO] [INFO] -----------------< org.lorainelab.igb:synonym-lookup >------------------ [INFO] Building Core - Synonym Lookup 9.1.6 [6/58] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ synonym-lookup --- [INFO] Deleting /home/admin/integrated-genome-browser/core/synonym-lookup/target [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ synonym-lookup --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] Copying 3 resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ synonym-lookup --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 9 source files to /home/admin/integrated-genome-browser/core/synonym-lookup/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ synonym-lookup --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 3 resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ synonym-lookup --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 1 source file to /home/admin/integrated-genome-browser/core/synonym-lookup/target/test-classes [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ synonym-lookup --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ synonym-lookup --- [INFO] [INFO] --- maven-install-plugin:3.0.0-M1:install (default-install) @ synonym-lookup --- [INFO] Installing /home/admin/integrated-genome-browser/core/synonym-lookup/target/synonym-lookup-9.1.6.jar to /home/admin/.m2/repository/org/lorainelab/igb/synonym-lookup/9.1.6/synonym-lookup-9.1.6.jar [INFO] Installing /home/admin/integrated-genome-browser/core/synonym-lookup/pom.xml to /home/admin/.m2/repository/org/lorainelab/igb/synonym-lookup/9.1.6/synonym-lookup-9.1.6.pom [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ synonym-lookup --- [INFO] Installing org/lorainelab/igb/synonym-lookup/9.1.6/synonym-lookup-9.1.6.jar [INFO] Writing OBR metadata [INFO] [INFO] --- maven-dependency-plugin:2.9:copy (copy) @ synonym-lookup --- [INFO] Configured Artifact: org.lorainelab.igb:synonym-lookup:9.1.6:jar [INFO] Copying synonym-lookup-9.1.6.jar to /home/admin/integrated-genome-browser/bundles/synonym-lookup-9.1.6.jar [INFO] [INFO] --------------------< org.lorainelab.igb:genometry >-------------------- [INFO] Building Core - Genometry (Data Models) 9.1.6 [7/58] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ genometry --- [INFO] Deleting /home/admin/integrated-genome-browser/core/genometry/target [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ genometry --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] Copying 2 resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ genometry --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 396 source files to /home/admin/integrated-genome-browser/core/genometry/target/classes Note: /home/admin/integrated-genome-browser/core/genometry/src/main/java/com/affymetrix/genometry/thread/CThreadWorker.java uses unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ genometry --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 61 resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ genometry --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 28 source files to /home/admin/integrated-genome-browser/core/genometry/target/test-classes [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ genometry --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ genometry --- [WARNING] Bundle org.lorainelab.igb:genometry:bundle:9.1.6 : Export com.affymetrix.genometry.parsers.useq, has 1, private references [com.affymetrix.genometry.parsers.useq.data], [INFO] [INFO] --- maven-install-plugin:3.0.0-M1:install (default-install) @ genometry --- [INFO] Installing /home/admin/integrated-genome-browser/core/genometry/target/genometry-9.1.6.jar to /home/admin/.m2/repository/org/lorainelab/igb/genometry/9.1.6/genometry-9.1.6.jar [INFO] Installing /home/admin/integrated-genome-browser/core/genometry/pom.xml to /home/admin/.m2/repository/org/lorainelab/igb/genometry/9.1.6/genometry-9.1.6.pom [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ genometry --- [INFO] Installing org/lorainelab/igb/genometry/9.1.6/genometry-9.1.6.jar [INFO] Writing OBR metadata [INFO] [INFO] --- maven-dependency-plugin:2.9:copy (copy) @ genometry --- [INFO] Configured Artifact: org.lorainelab.igb:genometry:9.1.6:jar [INFO] Copying genometry-9.1.6.jar to /home/admin/integrated-genome-browser/bundles/genometry-9.1.6.jar [INFO] [INFO] -----------------< org.lorainelab.igb:igb-preferences >----------------- [INFO] Building Core - Preferences 9.1.6 [8/58] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ igb-preferences --- [INFO] Deleting /home/admin/integrated-genome-browser/core/igb-preferences/target [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ igb-preferences --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] Copying 1 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ igb-preferences --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 7 source files to /home/admin/integrated-genome-browser/core/igb-preferences/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ igb-preferences --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ igb-preferences --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 1 source file to /home/admin/integrated-genome-browser/core/igb-preferences/target/test-classes [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ igb-preferences --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ igb-preferences --- [INFO] [INFO] --- maven-install-plugin:3.0.0-M1:install (default-install) @ igb-preferences --- [INFO] Installing /home/admin/integrated-genome-browser/core/igb-preferences/target/igb-preferences-9.1.6.jar to /home/admin/.m2/repository/org/lorainelab/igb/igb-preferences/9.1.6/igb-preferences-9.1.6.jar [INFO] Installing /home/admin/integrated-genome-browser/core/igb-preferences/pom.xml to /home/admin/.m2/repository/org/lorainelab/igb/igb-preferences/9.1.6/igb-preferences-9.1.6.pom [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ igb-preferences --- [INFO] Installing org/lorainelab/igb/igb-preferences/9.1.6/igb-preferences-9.1.6.jar [INFO] Writing OBR metadata [INFO] [INFO] --- maven-dependency-plugin:2.9:copy (copy) @ igb-preferences --- [INFO] Configured Artifact: org.lorainelab.igb:igb-preferences:9.1.6:jar [INFO] Copying igb-preferences-9.1.6.jar to /home/admin/integrated-genome-browser/bundles/igb-preferences-9.1.6.jar [INFO] [INFO] -------------------< org.lorainelab.igb:igbSwingExt >------------------- [INFO] Building Core - IGB Swing Extensions 9.1.6 [9/58] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ igbSwingExt --- [INFO] Deleting /home/admin/integrated-genome-browser/core/igb-swing-ext/target [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ igbSwingExt --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] skip non existing resourceDirectory /home/admin/integrated-genome-browser/core/igb-swing-ext/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ igbSwingExt --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 41 source files to /home/admin/integrated-genome-browser/core/igb-swing-ext/target/classes Note: /home/admin/integrated-genome-browser/core/igb-swing-ext/src/main/java/com/affymetrix/igb/swing/JRPComboBox.java uses unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:manifest (bundle-manifest) @ igbSwingExt --- [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ igbSwingExt --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/admin/integrated-genome-browser/core/igb-swing-ext/src/test/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ igbSwingExt --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ igbSwingExt --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ igbSwingExt --- [INFO] [INFO] --- maven-install-plugin:3.0.0-M1:install (default-install) @ igbSwingExt --- [INFO] Installing /home/admin/integrated-genome-browser/core/igb-swing-ext/target/igbSwingExt-9.1.6.jar to /home/admin/.m2/repository/org/lorainelab/igb/igbSwingExt/9.1.6/igbSwingExt-9.1.6.jar [INFO] Installing /home/admin/integrated-genome-browser/core/igb-swing-ext/pom.xml to /home/admin/.m2/repository/org/lorainelab/igb/igbSwingExt/9.1.6/igbSwingExt-9.1.6.pom [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ igbSwingExt --- [INFO] Installing org/lorainelab/igb/igbSwingExt/9.1.6/igbSwingExt-9.1.6.jar [INFO] Writing OBR metadata [INFO] [INFO] --- maven-dependency-plugin:2.9:copy (copy) @ igbSwingExt --- [INFO] Configured Artifact: org.lorainelab.igb:igbSwingExt:9.1.6:jar [INFO] Copying igbSwingExt-9.1.6.jar to /home/admin/integrated-genome-browser/bundles/igbSwingExt-9.1.6.jar [INFO] [INFO] -------------< org.lorainelab.igb:igb-genoviz-extensions >-------------- [INFO] Building Core - Genoviz Extensions 9.1.6 [10/58] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ igb-genoviz-extensions --- [INFO] Deleting /home/admin/integrated-genome-browser/core/igb-genoviz-ext/target [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ igb-genoviz-extensions --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] Copying 1 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ igb-genoviz-extensions --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 10 source files to /home/admin/integrated-genome-browser/core/igb-genoviz-ext/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ igb-genoviz-extensions --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/admin/integrated-genome-browser/core/igb-genoviz-ext/src/test/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ igb-genoviz-extensions --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ igb-genoviz-extensions --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ igb-genoviz-extensions --- [INFO] [INFO] --- maven-install-plugin:3.0.0-M1:install (default-install) @ igb-genoviz-extensions --- [INFO] Installing /home/admin/integrated-genome-browser/core/igb-genoviz-ext/target/igb-genoviz-extensions-9.1.6.jar to /home/admin/.m2/repository/org/lorainelab/igb/igb-genoviz-extensions/9.1.6/igb-genoviz-extensions-9.1.6.jar [INFO] Installing /home/admin/integrated-genome-browser/core/igb-genoviz-ext/pom.xml to /home/admin/.m2/repository/org/lorainelab/igb/igb-genoviz-extensions/9.1.6/igb-genoviz-extensions-9.1.6.pom [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ igb-genoviz-extensions --- [INFO] Installing org/lorainelab/igb/igb-genoviz-extensions/9.1.6/igb-genoviz-extensions-9.1.6.jar [INFO] Writing OBR metadata [INFO] [INFO] --- maven-dependency-plugin:2.9:copy (copy) @ igb-genoviz-extensions --- [INFO] Configured Artifact: org.lorainelab.igb:igb-genoviz-extensions:9.1.6:jar [INFO] Copying igb-genoviz-extensions-9.1.6.jar to /home/admin/integrated-genome-browser/bundles/igb-genoviz-extensions-9.1.6.jar [INFO] [INFO] ------------------< org.lorainelab.igb:igb-services >------------------- [INFO] Building Core - IGB Services API 9.1.6 [11/58] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ igb-services --- [INFO] Deleting /home/admin/integrated-genome-browser/core/igb-services-api/target [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ igb-services --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] Copying 0 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ igb-services --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 20 source files to /home/admin/integrated-genome-browser/core/igb-services-api/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ igb-services --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ igb-services --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ igb-services --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ igb-services --- [INFO] [INFO] --- maven-install-plugin:3.0.0-M1:install (default-install) @ igb-services --- [INFO] Installing /home/admin/integrated-genome-browser/core/igb-services-api/target/igb-services-9.1.6.jar to /home/admin/.m2/repository/org/lorainelab/igb/igb-services/9.1.6/igb-services-9.1.6.jar [INFO] Installing /home/admin/integrated-genome-browser/core/igb-services-api/pom.xml to /home/admin/.m2/repository/org/lorainelab/igb/igb-services/9.1.6/igb-services-9.1.6.pom [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ igb-services --- [INFO] Installing org/lorainelab/igb/igb-services/9.1.6/igb-services-9.1.6.jar [INFO] Writing OBR metadata [INFO] [INFO] --- maven-dependency-plugin:2.9:copy (copy) @ igb-services --- [INFO] Configured Artifact: org.lorainelab.igb:igb-services:9.1.6:jar [INFO] Copying igb-services-9.1.6.jar to /home/admin/integrated-genome-browser/bundles/igb-services-9.1.6.jar [INFO] [INFO] ------------------< org.lorainelab.igb:frameManager >------------------- [INFO] Building Core - Frame Manager 9.1.6 [12/58] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ frameManager --- [INFO] Deleting /home/admin/integrated-genome-browser/core/frameManager/target [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ frameManager --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] Copying 1 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ frameManager --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 3 source files to /home/admin/integrated-genome-browser/core/frameManager/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ frameManager --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/admin/integrated-genome-browser/core/frameManager/src/test/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ frameManager --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ frameManager --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ frameManager --- [INFO] [INFO] --- maven-install-plugin:3.0.0-M1:install (default-install) @ frameManager --- [INFO] Installing /home/admin/integrated-genome-browser/core/frameManager/target/frameManager-9.1.6.jar to /home/admin/.m2/repository/org/lorainelab/igb/frameManager/9.1.6/frameManager-9.1.6.jar [INFO] Installing /home/admin/integrated-genome-browser/core/frameManager/pom.xml to /home/admin/.m2/repository/org/lorainelab/igb/frameManager/9.1.6/frameManager-9.1.6.pom [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ frameManager --- [INFO] Installing org/lorainelab/igb/frameManager/9.1.6/frameManager-9.1.6.jar [INFO] Writing OBR metadata [INFO] [INFO] --- maven-dependency-plugin:2.9:copy (copy) @ frameManager --- [INFO] Configured Artifact: org.lorainelab.igb:frameManager:9.1.6:jar [INFO] Copying frameManager-9.1.6.jar to /home/admin/integrated-genome-browser/bundles/frameManager-9.1.6.jar [INFO] [INFO] -----------------< org.lorainelab.igb:window-service >------------------ [INFO] Building Core - Window Service 9.1.6 [13/58] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ window-service --- [INFO] Deleting /home/admin/integrated-genome-browser/core/window-service/target [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ window-service --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] Copying 1 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ window-service --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 13 source files to /home/admin/integrated-genome-browser/core/window-service/target/classes Note: /home/admin/integrated-genome-browser/core/window-service/src/main/java/com/affymetrix/igb/window/service/def/WindowServiceDefaultImpl.java uses or overrides a deprecated API. Note: Recompile with -Xlint:deprecation for details. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ window-service --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ window-service --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ window-service --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ window-service --- [INFO] [INFO] --- maven-install-plugin:3.0.0-M1:install (default-install) @ window-service --- [INFO] Installing /home/admin/integrated-genome-browser/core/window-service/target/window-service-9.1.6.jar to /home/admin/.m2/repository/org/lorainelab/igb/window-service/9.1.6/window-service-9.1.6.jar [INFO] Installing /home/admin/integrated-genome-browser/core/window-service/pom.xml to /home/admin/.m2/repository/org/lorainelab/igb/window-service/9.1.6/window-service-9.1.6.pom [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ window-service --- [INFO] Installing org/lorainelab/igb/window-service/9.1.6/window-service-9.1.6.jar [INFO] Writing OBR metadata [INFO] [INFO] --- maven-dependency-plugin:2.9:copy (copy) @ window-service --- [INFO] Configured Artifact: org.lorainelab.igb:window-service:9.1.6:jar [INFO] Copying window-service-9.1.6.jar to /home/admin/integrated-genome-browser/bundles/window-service-9.1.6.jar [INFO] [INFO] -----------------< org.lorainelab.igb:igb-javafx-util >----------------- [INFO] Building Core - JavaFX Utilities 9.1.6 [14/58] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ igb-javafx-util --- [INFO] Deleting /home/admin/integrated-genome-browser/core/igb-javafx-util/target [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ igb-javafx-util --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] skip non existing resourceDirectory /home/admin/integrated-genome-browser/core/igb-javafx-util/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ igb-javafx-util --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 2 source files to /home/admin/integrated-genome-browser/core/igb-javafx-util/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ igb-javafx-util --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/admin/integrated-genome-browser/core/igb-javafx-util/src/test/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ igb-javafx-util --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ igb-javafx-util --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ igb-javafx-util --- [INFO] [INFO] --- maven-install-plugin:3.0.0-M1:install (default-install) @ igb-javafx-util --- [INFO] Installing /home/admin/integrated-genome-browser/core/igb-javafx-util/target/igb-javafx-util-9.1.6.jar to /home/admin/.m2/repository/org/lorainelab/igb/igb-javafx-util/9.1.6/igb-javafx-util-9.1.6.jar [INFO] Installing /home/admin/integrated-genome-browser/core/igb-javafx-util/pom.xml to /home/admin/.m2/repository/org/lorainelab/igb/igb-javafx-util/9.1.6/igb-javafx-util-9.1.6.pom [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ igb-javafx-util --- [INFO] Installing org/lorainelab/igb/igb-javafx-util/9.1.6/igb-javafx-util-9.1.6.jar [INFO] Writing OBR metadata [INFO] [INFO] --- maven-dependency-plugin:2.9:copy (copy) @ igb-javafx-util --- [INFO] Configured Artifact: org.lorainelab.igb:igb-javafx-util:9.1.6:jar [INFO] Copying igb-javafx-util-9.1.6.jar to /home/admin/integrated-genome-browser/bundles/igb-javafx-util-9.1.6.jar [INFO] [INFO] -----------< org.lorainelab.igb:org.lorainelab.igb.menu.api >----------- [INFO] Building Core - Menu API 9.1.6 [15/58] [INFO] -------------------------------[ bundle ]------------------------------- Downloading from repo1: https://maven.bioviz.org/repo1/commons-io/commons-io/2.4/commons-io-2.4.jar Downloading from repo2: https://maven.bioviz.org/repo2/commons-io/commons-io/2.4/commons-io-2.4.jar Downloading from repo3: https://maven.bioviz.org/repo3/commons-io/commons-io/2.4/commons-io-2.4.jar Downloading from maven-releases: https://nexus.bioviz.org/repository/maven-releases/commons-io/commons-io/2.4/commons-io-2.4.jar Downloading from central: https://repo.maven.apache.org/maven2/commons-io/commons-io/2.4/commons-io-2.4.jar Downloaded from central: https://repo.maven.apache.org/maven2/commons-io/commons-io/2.4/commons-io-2.4.jar (185 kB at 816 kB/s) [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ org.lorainelab.igb.menu.api --- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ org.lorainelab.igb.menu.api --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] skip non existing resourceDirectory /home/admin/integrated-genome-browser/core/menu-api/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ org.lorainelab.igb.menu.api --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 13 source files to /home/admin/integrated-genome-browser/core/menu-api/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ org.lorainelab.igb.menu.api --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/admin/integrated-genome-browser/core/menu-api/src/test/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ org.lorainelab.igb.menu.api --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ org.lorainelab.igb.menu.api --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ org.lorainelab.igb.menu.api --- [INFO] [INFO] --- maven-install-plugin:3.0.0-M1:install (default-install) @ org.lorainelab.igb.menu.api --- [INFO] Installing /home/admin/integrated-genome-browser/core/menu-api/target/org.lorainelab.igb.menu.api-9.1.6.jar to /home/admin/.m2/repository/org/lorainelab/igb/org.lorainelab.igb.menu.api/9.1.6/org.lorainelab.igb.menu.api-9.1.6.jar [INFO] Installing /home/admin/integrated-genome-browser/core/menu-api/pom.xml to /home/admin/.m2/repository/org/lorainelab/igb/org.lorainelab.igb.menu.api/9.1.6/org.lorainelab.igb.menu.api-9.1.6.pom [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ org.lorainelab.igb.menu.api --- [INFO] Installing org/lorainelab/igb/org.lorainelab.igb.menu.api/9.1.6/org.lorainelab.igb.menu.api-9.1.6.jar [INFO] Writing OBR metadata [INFO] [INFO] --- maven-dependency-plugin:2.9:copy (copy) @ org.lorainelab.igb.menu.api --- [INFO] Configured Artifact: org.lorainelab.igb:org.lorainelab.igb.menu.api:9.1.6:jar [INFO] Copying org.lorainelab.igb.menu.api-9.1.6.jar to /home/admin/integrated-genome-browser/bundles/org.lorainelab.igb.menu.api-9.1.6.jar [INFO] [INFO] --------------< org.lorainelab.igb:context-menu-service >--------------- [INFO] Building Core - Context Menu Service 9.1.6 [16/58] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ context-menu-service --- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ context-menu-service --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] skip non existing resourceDirectory /home/admin/integrated-genome-browser/core/context-menu-service/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ context-menu-service --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 2 source files to /home/admin/integrated-genome-browser/core/context-menu-service/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ context-menu-service --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/admin/integrated-genome-browser/core/context-menu-service/src/test/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ context-menu-service --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ context-menu-service --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ context-menu-service --- [INFO] [INFO] --- maven-install-plugin:3.0.0-M1:install (default-install) @ context-menu-service --- [INFO] Installing /home/admin/integrated-genome-browser/core/context-menu-service/target/context-menu-service-9.1.6.jar to /home/admin/.m2/repository/org/lorainelab/igb/context-menu-service/9.1.6/context-menu-service-9.1.6.jar [INFO] Installing /home/admin/integrated-genome-browser/core/context-menu-service/pom.xml to /home/admin/.m2/repository/org/lorainelab/igb/context-menu-service/9.1.6/context-menu-service-9.1.6.pom [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ context-menu-service --- [INFO] Installing org/lorainelab/igb/context-menu-service/9.1.6/context-menu-service-9.1.6.jar [INFO] Writing OBR metadata [INFO] [INFO] --- maven-dependency-plugin:2.9:copy (copy) @ context-menu-service --- [INFO] Configured Artifact: org.lorainelab.igb:context-menu-service:9.1.6:jar [INFO] Copying context-menu-service-9.1.6.jar to /home/admin/integrated-genome-browser/bundles/context-menu-service-9.1.6.jar [INFO] [INFO] -----------------------< org.lorainelab.igb:igb >----------------------- [INFO] Building Core - IGB 9.1.6 [17/58] [INFO] -------------------------------[ bundle ]------------------------------- Downloading from central: https://repo.maven.apache.org/maven2/pl/project13/maven/git-commit-id-plugin/2.1.4/git-commit-id-plugin-2.1.4.pom Downloaded from central: https://repo.maven.apache.org/maven2/pl/project13/maven/git-commit-id-plugin/2.1.4/git-commit-id-plugin-2.1.4.pom (7.9 kB at 358 kB/s) Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/oss/oss-parent/6/oss-parent-6.pom Downloaded from central: https://repo.maven.apache.org/maven2/org/sonatype/oss/oss-parent/6/oss-parent-6.pom (4.8 kB at 210 kB/s) Downloading from central: https://repo.maven.apache.org/maven2/pl/project13/maven/git-commit-id-plugin/2.1.4/git-commit-id-plugin-2.1.4.jar Downloaded from central: https://repo.maven.apache.org/maven2/pl/project13/maven/git-commit-id-plugin/2.1.4/git-commit-id-plugin-2.1.4.jar (37 kB at 853 kB/s) Downloading from repo1: https://maven.bioviz.org/repo1/com/boxysystems/jgoogleanalytics/0.4/jgoogleanalytics-0.4.pom Downloading from repo2: https://maven.bioviz.org/repo2/com/boxysystems/jgoogleanalytics/0.4/jgoogleanalytics-0.4.pom Downloaded from repo2: https://maven.bioviz.org/repo2/com/boxysystems/jgoogleanalytics/0.4/jgoogleanalytics-0.4.pom (465 B at 6.7 kB/s) Downloading from repo1: https://maven.bioviz.org/repo1/org/freehep/freehep-graphicsio-svg/2.4/freehep-graphicsio-svg-2.4.pom Downloading from repo2: https://maven.bioviz.org/repo2/org/freehep/freehep-graphicsio-svg/2.4/freehep-graphicsio-svg-2.4.pom Downloading from repo3: https://maven.bioviz.org/repo3/org/freehep/freehep-graphicsio-svg/2.4/freehep-graphicsio-svg-2.4.pom Downloading from maven-releases: https://nexus.bioviz.org/repository/maven-releases/org/freehep/freehep-graphicsio-svg/2.4/freehep-graphicsio-svg-2.4.pom Downloading from central: https://repo.maven.apache.org/maven2/org/freehep/freehep-graphicsio-svg/2.4/freehep-graphicsio-svg-2.4.pom Downloaded from central: https://repo.maven.apache.org/maven2/org/freehep/freehep-graphicsio-svg/2.4/freehep-graphicsio-svg-2.4.pom (1.1 kB at 78 kB/s) Downloading from repo1: https://maven.bioviz.org/repo1/org/freehep/freehep-vectorgraphics/2.4/freehep-vectorgraphics-2.4.pom Downloading from repo2: https://maven.bioviz.org/repo2/org/freehep/freehep-vectorgraphics/2.4/freehep-vectorgraphics-2.4.pom Downloading from repo3: https://maven.bioviz.org/repo3/org/freehep/freehep-vectorgraphics/2.4/freehep-vectorgraphics-2.4.pom Downloading from maven-releases: https://nexus.bioviz.org/repository/maven-releases/org/freehep/freehep-vectorgraphics/2.4/freehep-vectorgraphics-2.4.pom Downloading from central: https://repo.maven.apache.org/maven2/org/freehep/freehep-vectorgraphics/2.4/freehep-vectorgraphics-2.4.pom Downloaded from central: https://repo.maven.apache.org/maven2/org/freehep/freehep-vectorgraphics/2.4/freehep-vectorgraphics-2.4.pom (13 kB at 481 kB/s) Downloading from repo1: https://maven.bioviz.org/repo1/org/freehep/freehep-graphics2d/2.4/freehep-graphics2d-2.4.pom Downloading from repo2: https://maven.bioviz.org/repo2/org/freehep/freehep-graphics2d/2.4/freehep-graphics2d-2.4.pom Downloading from repo3: https://maven.bioviz.org/repo3/org/freehep/freehep-graphics2d/2.4/freehep-graphics2d-2.4.pom Downloading from maven-releases: https://nexus.bioviz.org/repository/maven-releases/org/freehep/freehep-graphics2d/2.4/freehep-graphics2d-2.4.pom Downloading from central: 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https://repo.maven.apache.org/maven2/org/freehep/freehep-graphicsbase/2.4/freehep-graphicsbase-2.4.pom (804 B at 73 kB/s) Downloading from repo1: https://maven.bioviz.org/repo1/org/freehep/freehep-io/2.2.2/freehep-io-2.2.2.pom Downloading from repo2: https://maven.bioviz.org/repo2/org/freehep/freehep-io/2.2.2/freehep-io-2.2.2.pom Downloading from repo3: https://maven.bioviz.org/repo3/org/freehep/freehep-io/2.2.2/freehep-io-2.2.2.pom Downloading from maven-releases: https://nexus.bioviz.org/repository/maven-releases/org/freehep/freehep-io/2.2.2/freehep-io-2.2.2.pom Downloading from central: https://repo.maven.apache.org/maven2/org/freehep/freehep-io/2.2.2/freehep-io-2.2.2.pom Downloaded from central: https://repo.maven.apache.org/maven2/org/freehep/freehep-io/2.2.2/freehep-io-2.2.2.pom (6.9 kB at 361 kB/s) Downloading from repo1: https://maven.bioviz.org/repo1/org/freehep/freehep-graphicsio/2.4/freehep-graphicsio-2.4.pom Downloading from repo2: https://maven.bioviz.org/repo2/org/freehep/freehep-graphicsio/2.4/freehep-graphicsio-2.4.pom Downloading from repo3: https://maven.bioviz.org/repo3/org/freehep/freehep-graphicsio/2.4/freehep-graphicsio-2.4.pom Downloading from maven-releases: https://nexus.bioviz.org/repository/maven-releases/org/freehep/freehep-graphicsio/2.4/freehep-graphicsio-2.4.pom Downloading from central: https://repo.maven.apache.org/maven2/org/freehep/freehep-graphicsio/2.4/freehep-graphicsio-2.4.pom Downloaded from central: https://repo.maven.apache.org/maven2/org/freehep/freehep-graphicsio/2.4/freehep-graphicsio-2.4.pom (1.4 kB at 89 kB/s) Downloading from repo1: https://maven.bioviz.org/repo1/org/freehep/freehep-graphicsio-tests/2.4/freehep-graphicsio-tests-2.4.pom Downloading from repo2: https://maven.bioviz.org/repo2/org/freehep/freehep-graphicsio-tests/2.4/freehep-graphicsio-tests-2.4.pom Downloading from repo3: https://maven.bioviz.org/repo3/org/freehep/freehep-graphicsio-tests/2.4/freehep-graphicsio-tests-2.4.pom Downloading from maven-releases: https://nexus.bioviz.org/repository/maven-releases/org/freehep/freehep-graphicsio-tests/2.4/freehep-graphicsio-tests-2.4.pom Downloading from central: https://repo.maven.apache.org/maven2/org/freehep/freehep-graphicsio-tests/2.4/freehep-graphicsio-tests-2.4.pom Downloaded from central: https://repo.maven.apache.org/maven2/org/freehep/freehep-graphicsio-tests/2.4/freehep-graphicsio-tests-2.4.pom (1.7 kB at 133 kB/s) Downloading from repo1: https://maven.bioviz.org/repo1/be/pwnt/jflow/1.0/jflow-1.0.pom Downloading from repo2: https://maven.bioviz.org/repo2/be/pwnt/jflow/1.0/jflow-1.0.pom Downloaded from repo2: https://maven.bioviz.org/repo2/be/pwnt/jflow/1.0/jflow-1.0.pom (446 B at 9.7 kB/s) Downloading from repo1: https://maven.bioviz.org/repo1/com/boxysystems/jgoogleanalytics/0.4/jgoogleanalytics-0.4.jar Downloading from repo1: https://maven.bioviz.org/repo1/org/freehep/freehep-graphicsio-svg/2.4/freehep-graphicsio-svg-2.4.jar Downloading from repo1: https://maven.bioviz.org/repo1/org/freehep/freehep-graphics2d/2.4/freehep-graphics2d-2.4.jar Downloading from repo1: https://maven.bioviz.org/repo1/org/freehep/freehep-graphicsio/2.4/freehep-graphicsio-2.4.jar Downloading from repo1: https://maven.bioviz.org/repo1/org/freehep/freehep-io/2.2.2/freehep-io-2.2.2.jar Downloading from repo1: https://maven.bioviz.org/repo1/org/freehep/freehep-graphicsio-tests/2.4/freehep-graphicsio-tests-2.4.jar Downloading from repo1: https://maven.bioviz.org/repo1/be/pwnt/jflow/1.0/jflow-1.0.jar Downloading from repo1: https://maven.bioviz.org/repo1/org/freehep/freehep-graphicsbase/2.4/freehep-graphicsbase-2.4.jar Downloading from repo2: https://maven.bioviz.org/repo2/com/boxysystems/jgoogleanalytics/0.4/jgoogleanalytics-0.4.jar Downloading from repo2: 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(902 kB at 2.0 MB/s) Downloading from repo3: https://maven.bioviz.org/repo3/org/freehep/freehep-graphicsio-svg/2.4/freehep-graphicsio-svg-2.4.jar Downloading from repo3: https://maven.bioviz.org/repo3/org/freehep/freehep-graphics2d/2.4/freehep-graphics2d-2.4.jar Downloading from repo3: https://maven.bioviz.org/repo3/org/freehep/freehep-graphicsio/2.4/freehep-graphicsio-2.4.jar Downloading from repo3: https://maven.bioviz.org/repo3/org/freehep/freehep-io/2.2.2/freehep-io-2.2.2.jar Downloading from repo3: https://maven.bioviz.org/repo3/org/freehep/freehep-graphicsio-tests/2.4/freehep-graphicsio-tests-2.4.jar Downloading from repo3: https://maven.bioviz.org/repo3/org/freehep/freehep-graphicsbase/2.4/freehep-graphicsbase-2.4.jar Downloading from maven-releases: https://nexus.bioviz.org/repository/maven-releases/org/freehep/freehep-graphicsio-svg/2.4/freehep-graphicsio-svg-2.4.jar Downloading from maven-releases: https://nexus.bioviz.org/repository/maven-releases/org/freehep/freehep-graphics2d/2.4/freehep-graphics2d-2.4.jar Downloading from maven-releases: https://nexus.bioviz.org/repository/maven-releases/org/freehep/freehep-graphicsio/2.4/freehep-graphicsio-2.4.jar Downloading from maven-releases: https://nexus.bioviz.org/repository/maven-releases/org/freehep/freehep-io/2.2.2/freehep-io-2.2.2.jar Downloading from maven-releases: https://nexus.bioviz.org/repository/maven-releases/org/freehep/freehep-graphicsio-tests/2.4/freehep-graphicsio-tests-2.4.jar Downloading from maven-releases: https://nexus.bioviz.org/repository/maven-releases/org/freehep/freehep-graphicsbase/2.4/freehep-graphicsbase-2.4.jar Downloading from central: https://repo.maven.apache.org/maven2/org/freehep/freehep-graphics2d/2.4/freehep-graphics2d-2.4.jar Downloading from central: https://repo.maven.apache.org/maven2/org/freehep/freehep-graphicsio/2.4/freehep-graphicsio-2.4.jar Downloading from central: https://repo.maven.apache.org/maven2/org/freehep/freehep-io/2.2.2/freehep-io-2.2.2.jar Downloading from central: https://repo.maven.apache.org/maven2/org/freehep/freehep-graphicsio-svg/2.4/freehep-graphicsio-svg-2.4.jar Downloading from central: https://repo.maven.apache.org/maven2/org/freehep/freehep-graphicsio-tests/2.4/freehep-graphicsio-tests-2.4.jar Downloaded from central: https://repo.maven.apache.org/maven2/org/freehep/freehep-graphicsio-svg/2.4/freehep-graphicsio-svg-2.4.jar (24 kB at 251 kB/s) Downloading from central: https://repo.maven.apache.org/maven2/org/freehep/freehep-graphicsbase/2.4/freehep-graphicsbase-2.4.jar Downloaded from central: https://repo.maven.apache.org/maven2/org/freehep/freehep-io/2.2.2/freehep-io-2.2.2.jar (73 kB at 435 kB/s) Downloaded from central: https://repo.maven.apache.org/maven2/org/freehep/freehep-graphics2d/2.4/freehep-graphics2d-2.4.jar (127 kB at 710 kB/s) Downloaded from central: https://repo.maven.apache.org/maven2/org/freehep/freehep-graphicsbase/2.4/freehep-graphicsbase-2.4.jar (68 kB at 335 kB/s) Downloaded from central: https://repo.maven.apache.org/maven2/org/freehep/freehep-graphicsio-tests/2.4/freehep-graphicsio-tests-2.4.jar (112 kB at 538 kB/s) Downloaded from central: https://repo.maven.apache.org/maven2/org/freehep/freehep-graphicsio/2.4/freehep-graphicsio-2.4.jar (192 kB at 730 kB/s) [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ igb --- [INFO] [INFO] --- git-commit-id-plugin:2.1.4:revision (default) @ igb --- Downloading from central: https://repo.maven.apache.org/maven2/joda-time/joda-time/2.0/joda-time-2.0.pom Downloaded from central: https://repo.maven.apache.org/maven2/joda-time/joda-time/2.0/joda-time-2.0.pom (15 kB at 696 kB/s) Downloading from central: https://repo.maven.apache.org/maven2/com/google/guava/guava/13.0/guava-13.0.pom Downloaded from central: https://repo.maven.apache.org/maven2/com/google/guava/guava/13.0/guava-13.0.pom (5.3 kB at 445 kB/s) Downloading from central: https://repo.maven.apache.org/maven2/com/google/guava/guava-parent/13.0/guava-parent-13.0.pom Downloaded from central: https://repo.maven.apache.org/maven2/com/google/guava/guava-parent/13.0/guava-parent-13.0.pom (2.6 kB at 284 kB/s) Downloading from central: https://repo.maven.apache.org/maven2/com/intellij/annotations/9.0.4/annotations-9.0.4.pom Downloaded from central: https://repo.maven.apache.org/maven2/com/intellij/annotations/9.0.4/annotations-9.0.4.pom (1.2 kB at 84 kB/s) Downloading from central: https://repo.maven.apache.org/maven2/org/eclipse/jgit/org.eclipse.jgit/2.0.0.201206130900-r/org.eclipse.jgit-2.0.0.201206130900-r.pom Downloaded from central: https://repo.maven.apache.org/maven2/org/eclipse/jgit/org.eclipse.jgit/2.0.0.201206130900-r/org.eclipse.jgit-2.0.0.201206130900-r.pom (6.0 kB at 397 kB/s) Downloading from central: https://repo.maven.apache.org/maven2/org/eclipse/jgit/org.eclipse.jgit-parent/2.0.0.201206130900-r/org.eclipse.jgit-parent-2.0.0.201206130900-r.pom Downloaded from central: https://repo.maven.apache.org/maven2/org/eclipse/jgit/org.eclipse.jgit-parent/2.0.0.201206130900-r/org.eclipse.jgit-parent-2.0.0.201206130900-r.pom (16 kB at 857 kB/s) Downloading from central: https://repo.maven.apache.org/maven2/com/jcraft/jsch/0.1.44-1/jsch-0.1.44-1.pom Downloaded from central: https://repo.maven.apache.org/maven2/com/jcraft/jsch/0.1.44-1/jsch-0.1.44-1.pom (3.4 kB at 340 kB/s) Downloading from central: https://repo.maven.apache.org/maven2/joda-time/joda-time/2.0/joda-time-2.0.jar Downloading from central: https://repo.maven.apache.org/maven2/com/intellij/annotations/9.0.4/annotations-9.0.4.jar Downloading from central: https://repo.maven.apache.org/maven2/org/eclipse/jgit/org.eclipse.jgit/2.0.0.201206130900-r/org.eclipse.jgit-2.0.0.201206130900-r.jar Downloading from central: https://repo.maven.apache.org/maven2/com/jcraft/jsch/0.1.44-1/jsch-0.1.44-1.jar Downloading from central: https://repo.maven.apache.org/maven2/com/google/guava/guava/13.0/guava-13.0.jar Downloaded from central: https://repo.maven.apache.org/maven2/com/intellij/annotations/9.0.4/annotations-9.0.4.jar (10.0 kB at 181 kB/s) Downloaded from central: https://repo.maven.apache.org/maven2/com/jcraft/jsch/0.1.44-1/jsch-0.1.44-1.jar (214 kB at 750 kB/s) Downloaded from central: https://repo.maven.apache.org/maven2/joda-time/joda-time/2.0/joda-time-2.0.jar (569 kB at 1.2 MB/s) Downloaded from central: https://repo.maven.apache.org/maven2/org/eclipse/jgit/org.eclipse.jgit/2.0.0.201206130900-r/org.eclipse.jgit-2.0.0.201206130900-r.jar (1.6 MB at 2.0 MB/s) Downloaded from central: https://repo.maven.apache.org/maven2/com/google/guava/guava/13.0/guava-13.0.jar (1.9 MB at 2.2 MB/s) [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ igb --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 12 resources [INFO] Copying 48 resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ igb --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 339 source files to /home/admin/integrated-genome-browser/core/igb/target/classes Note: /home/admin/integrated-genome-browser/core/igb/src/main/java/com/affymetrix/igb/IgbServiceImpl.java uses or overrides a deprecated API. Note: Recompile with -Xlint:deprecation for details. Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ igb --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ igb --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 2 source files to /home/admin/integrated-genome-browser/core/igb/target/test-classes [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ igb --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ igb --- [WARNING] Bundle org.lorainelab.igb:igb:bundle:9.1.6 : Export com.affymetrix.igb.shared, has 2, private references [com.affymetrix.igb.tiers, com.affymetrix.igb.action], [WARNING] Bundle org.lorainelab.igb:igb:bundle:9.1.6 : Export com.affymetrix.igb.view.load, has 2, private references [com.affymetrix.igb.tiers, com.affymetrix.igb.view], [WARNING] Bundle org.lorainelab.igb:igb:bundle:9.1.6 : Export com.affymetrix.igb.view.factories, has 3, private references [com.affymetrix.igb.services.registry, com.affymetrix.igb.view.layout, com.affymetrix.igb.view], [WARNING] Bundle org.lorainelab.igb:igb:bundle:9.1.6 : Export com.affymetrix.igb.glyph, has 1, private references [com.affymetrix.igb.view], [INFO] [INFO] --- maven-install-plugin:3.0.0-M1:install (default-install) @ igb --- [INFO] Installing /home/admin/integrated-genome-browser/core/igb/target/igb-9.1.6.jar to /home/admin/.m2/repository/org/lorainelab/igb/igb/9.1.6/igb-9.1.6.jar [INFO] Installing /home/admin/integrated-genome-browser/core/igb/pom.xml to /home/admin/.m2/repository/org/lorainelab/igb/igb/9.1.6/igb-9.1.6.pom [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ igb --- [INFO] Installing org/lorainelab/igb/igb/9.1.6/igb-9.1.6.jar [INFO] Writing OBR metadata [INFO] [INFO] --- maven-dependency-plugin:2.9:copy (copy) @ igb --- [INFO] Configured Artifact: org.lorainelab.igb:igb:9.1.6:jar [INFO] Copying igb-9.1.6.jar to /home/admin/integrated-genome-browser/bundles/igb-9.1.6.jar [INFO] [INFO] ---------------< org.lorainelab.igb:shared-lib-wrapper >---------------- [INFO] Building Core - Bundle wrapper, deployer 9.1.6 [18/58] [INFO] -------------------------------[ bundle ]------------------------------- Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/plugins/maven-dependency-plugin/2.8/maven-dependency-plugin-2.8.pom Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/plugins/maven-dependency-plugin/2.8/maven-dependency-plugin-2.8.pom (11 kB at 545 kB/s) Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/plugins/maven-plugins/24/maven-plugins-24.pom Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/plugins/maven-plugins/24/maven-plugins-24.pom (11 kB at 675 kB/s) Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/plugins/maven-dependency-plugin/2.8/maven-dependency-plugin-2.8.jar Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/plugins/maven-dependency-plugin/2.8/maven-dependency-plugin-2.8.jar (153 kB at 2.7 MB/s) Downloading from repo1: https://maven.bioviz.org/repo1/fi/iki/elonen/NanoHTTPD/2.0.5/NanoHTTPD-2.0.5.pom Downloading from repo2: https://maven.bioviz.org/repo2/fi/iki/elonen/NanoHTTPD/2.0.5/NanoHTTPD-2.0.5.pom Downloaded from repo2: https://maven.bioviz.org/repo2/fi/iki/elonen/NanoHTTPD/2.0.5/NanoHTTPD-2.0.5.pom (458 B at 12 kB/s) Downloading from repo1: https://maven.bioviz.org/repo1/fi/iki/elonen/NanoHTTPD/2.0.5/NanoHTTPD-2.0.5.jar Downloading from repo2: https://maven.bioviz.org/repo2/fi/iki/elonen/NanoHTTPD/2.0.5/NanoHTTPD-2.0.5.jar Downloaded from repo2: https://maven.bioviz.org/repo2/fi/iki/elonen/NanoHTTPD/2.0.5/NanoHTTPD-2.0.5.jar (48 kB at 803 kB/s) [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ shared-lib-wrapper --- [INFO] Deleting /home/admin/integrated-genome-browser/bundles (includes = [shared-lib-wrapper-9.1.6.jar, guava*.jar, commons-lang3*.jar, commons-*.jar, genoviz*.jar, felix.jar, org.apache.felix*.jar, bigwig*.jar, jide-ultimate*.jar], excludes = []) [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ shared-lib-wrapper --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/admin/integrated-genome-browser/core/shared-lib-wrapper/src/main/java [INFO] skip non existing resourceDirectory /home/admin/integrated-genome-browser/core/shared-lib-wrapper/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ shared-lib-wrapper --- [INFO] No sources to compile [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ shared-lib-wrapper --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/admin/integrated-genome-browser/core/shared-lib-wrapper/src/test/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ shared-lib-wrapper --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ shared-lib-wrapper --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ shared-lib-wrapper --- [WARNING] Bundle org.lorainelab.igb:shared-lib-wrapper:bundle:9.1.6 : Unused Export-Package instructions: [org.jdesktop.swingx.*, com.boxysystems.jgoogleanalytics.*] [WARNING] Bundle org.lorainelab.igb:shared-lib-wrapper:bundle:9.1.6 : Export affymetrix.calvin.data, has 1, private references [affymetrix.portability], [WARNING] Bundle org.lorainelab.igb:shared-lib-wrapper:bundle:9.1.6 : Export affymetrix.calvin.parameter, has 1, private references [affymetrix.portability], [WARNING] Bundle org.lorainelab.igb:shared-lib-wrapper:bundle:9.1.6 : Export affymetrix.calvin.parsers, has 1, private references [affymetrix.portability], [WARNING] Bundle org.lorainelab.igb:shared-lib-wrapper:bundle:9.1.6 : Export affymetrix.calvin.writers, has 1, private references [affymetrix.portability], [WARNING] Bundle org.lorainelab.igb:shared-lib-wrapper:bundle:9.1.6 : Export affymetrix.fusion.chp, has 1, private references [affymetrix.portability], [WARNING] Bundle org.lorainelab.igb:shared-lib-wrapper:bundle:9.1.6 : Export affymetrix.gcos.chp, has 1, private references [affymetrix.portability], [WARNING] Bundle org.lorainelab.igb:shared-lib-wrapper:bundle:9.1.6 : Export cern.colt.matrix.doublealgo, has 3, private references [hep.aida.bin, cern.jet.random.engine, hep.aida], [WARNING] Bundle org.lorainelab.igb:shared-lib-wrapper:bundle:9.1.6 : Export org.freehep.graphicsbase.util, has 1, private references [junit.framework], [WARNING] Bundle org.lorainelab.igb:shared-lib-wrapper:bundle:9.1.6 : Export org.freehep.graphicsio.test, has 1, private references [junit.framework], [INFO] [INFO] --- maven-install-plugin:3.0.0-M1:install (default-install) @ shared-lib-wrapper --- [INFO] Installing /home/admin/integrated-genome-browser/core/shared-lib-wrapper/target/shared-lib-wrapper-9.1.6.jar to /home/admin/.m2/repository/org/lorainelab/igb/shared-lib-wrapper/9.1.6/shared-lib-wrapper-9.1.6.jar [INFO] Installing /home/admin/integrated-genome-browser/core/shared-lib-wrapper/pom.xml to /home/admin/.m2/repository/org/lorainelab/igb/shared-lib-wrapper/9.1.6/shared-lib-wrapper-9.1.6.pom [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ shared-lib-wrapper --- [INFO] Installing org/lorainelab/igb/shared-lib-wrapper/9.1.6/shared-lib-wrapper-9.1.6.jar [INFO] Writing OBR metadata [INFO] [INFO] --- maven-dependency-plugin:2.8:copy (copy) @ shared-lib-wrapper --- Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-artifact/2.0.9/maven-artifact-2.0.9.pom Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-artifact/2.0.9/maven-artifact-2.0.9.pom (1.6 kB at 116 kB/s) Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven/2.0.9/maven-2.0.9.pom Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven/2.0.9/maven-2.0.9.pom (19 kB at 1.1 MB/s) Downloading 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org.apache.commons:commons-csv:1.2:jar [INFO] Configured Artifact: commons-io:commons-io:2.4:jar [INFO] Configured Artifact: com.affymetrix:genoviz:1.1.9:jar [INFO] Configured Artifact: org.lorainelab.igb:shared-lib-wrapper:9.1.6:jar [INFO] Configured Artifact: org.apache.felix:org.apache.felix.main:5.2.0:jar [INFO] Configured Artifact: org.apache.felix:org.apache.felix.scr:1.8.2:jar Downloading from repo1: https://maven.bioviz.org/repo1/org/apache/felix/org.apache.felix.scr/1.8.2/org.apache.felix.scr-1.8.2.jar Downloading from repo2: https://maven.bioviz.org/repo2/org/apache/felix/org.apache.felix.scr/1.8.2/org.apache.felix.scr-1.8.2.jar Downloading from repo3: https://maven.bioviz.org/repo3/org/apache/felix/org.apache.felix.scr/1.8.2/org.apache.felix.scr-1.8.2.jar Downloading from maven-releases: https://nexus.bioviz.org/repository/maven-releases/org/apache/felix/org.apache.felix.scr/1.8.2/org.apache.felix.scr-1.8.2.jar Downloading from central: 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org.apache.felix:org.apache.felix.fileinstall:3.5.0:jar Downloading from repo1: https://maven.bioviz.org/repo1/org/apache/felix/org.apache.felix.fileinstall/3.5.0/org.apache.felix.fileinstall-3.5.0.jar Downloading from repo2: https://maven.bioviz.org/repo2/org/apache/felix/org.apache.felix.fileinstall/3.5.0/org.apache.felix.fileinstall-3.5.0.jar Downloading from repo3: https://maven.bioviz.org/repo3/org/apache/felix/org.apache.felix.fileinstall/3.5.0/org.apache.felix.fileinstall-3.5.0.jar Downloading from maven-releases: https://nexus.bioviz.org/repository/maven-releases/org/apache/felix/org.apache.felix.fileinstall/3.5.0/org.apache.felix.fileinstall-3.5.0.jar Downloading from central: https://repo.maven.apache.org/maven2/org/apache/felix/org.apache.felix.fileinstall/3.5.0/org.apache.felix.fileinstall-3.5.0.jar Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/felix/org.apache.felix.fileinstall/3.5.0/org.apache.felix.fileinstall-3.5.0.jar (109 kB at 5.7 MB/s) [INFO] Configured Artifact: com.github.kevinsawicki:http-request:6.0:jar [INFO] Configured Artifact: org.lorainelab.igb:org.lorainelab.igb.error.reporter.api:1.0.0:jar Downloading from repo1: https://maven.bioviz.org/repo1/org/lorainelab/igb/org.lorainelab.igb.error.reporter.api/1.0.0/org.lorainelab.igb.error.reporter.api-1.0.0.jar Downloading from repo2: https://maven.bioviz.org/repo2/org/lorainelab/igb/org.lorainelab.igb.error.reporter.api/1.0.0/org.lorainelab.igb.error.reporter.api-1.0.0.jar Downloaded from repo2: https://maven.bioviz.org/repo2/org/lorainelab/igb/org.lorainelab.igb.error.reporter.api/1.0.0/org.lorainelab.igb.error.reporter.api-1.0.0.jar (6.7 kB at 186 kB/s) [INFO] Configured Artifact: org.apache.felix:org.apache.felix.gogo.runtime:0.16.2:jar Downloading from repo1: https://maven.bioviz.org/repo1/org/apache/felix/org.apache.felix.gogo.runtime/0.16.2/org.apache.felix.gogo.runtime-0.16.2.jar Downloading from repo2: 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org.apache.felix:org.apache.felix.gogo.command:0.16.0:jar Downloading from repo1: https://maven.bioviz.org/repo1/org/apache/felix/org.apache.felix.gogo.command/0.16.0/org.apache.felix.gogo.command-0.16.0.jar Downloading from repo2: https://maven.bioviz.org/repo2/org/apache/felix/org.apache.felix.gogo.command/0.16.0/org.apache.felix.gogo.command-0.16.0.jar Downloading from repo3: https://maven.bioviz.org/repo3/org/apache/felix/org.apache.felix.gogo.command/0.16.0/org.apache.felix.gogo.command-0.16.0.jar Downloading from maven-releases: https://nexus.bioviz.org/repository/maven-releases/org/apache/felix/org.apache.felix.gogo.command/0.16.0/org.apache.felix.gogo.command-0.16.0.jar Downloading from central: https://repo.maven.apache.org/maven2/org/apache/felix/org.apache.felix.gogo.command/0.16.0/org.apache.felix.gogo.command-0.16.0.jar Downloaded from central: 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https://maven.bioviz.org/repo1/org/osgi/org.osgi.service.remoteserviceadmin/1.1.0/org.osgi.service.remoteserviceadmin-1.1.0.jar Downloading from repo2: https://maven.bioviz.org/repo2/org/osgi/org.osgi.service.remoteserviceadmin/1.1.0/org.osgi.service.remoteserviceadmin-1.1.0.jar Downloading from repo3: https://maven.bioviz.org/repo3/org/osgi/org.osgi.service.remoteserviceadmin/1.1.0/org.osgi.service.remoteserviceadmin-1.1.0.jar Downloading from maven-releases: https://nexus.bioviz.org/repository/maven-releases/org/osgi/org.osgi.service.remoteserviceadmin/1.1.0/org.osgi.service.remoteserviceadmin-1.1.0.jar Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.service.remoteserviceadmin/1.1.0/org.osgi.service.remoteserviceadmin-1.1.0.jar Downloaded from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.service.remoteserviceadmin/1.1.0/org.osgi.service.remoteserviceadmin-1.1.0.jar (70 kB at 5.0 MB/s) [INFO] Configured Artifact: org.lorainelab.igb:org.lorainelab.igb.remote.services.commons:1.0.0:jar Downloading from repo1: https://maven.bioviz.org/repo1/org/lorainelab/igb/org.lorainelab.igb.remote.services.commons/1.0.0/org.lorainelab.igb.remote.services.commons-1.0.0.jar Downloading from repo2: https://maven.bioviz.org/repo2/org/lorainelab/igb/org.lorainelab.igb.remote.services.commons/1.0.0/org.lorainelab.igb.remote.services.commons-1.0.0.jar Downloaded from repo2: https://maven.bioviz.org/repo2/org/lorainelab/igb/org.lorainelab.igb.remote.services.commons/1.0.0/org.lorainelab.igb.remote.services.commons-1.0.0.jar (54 kB at 1.1 MB/s) [INFO] Configured Artifact: org.lorainelab.igb:org.lorainelab.igb.remote.services.discovery.provider.configured:1.0.0:jar Downloading from repo1: https://maven.bioviz.org/repo1/org/lorainelab/igb/org.lorainelab.igb.remote.services.discovery.provider.configured/1.0.0/org.lorainelab.igb.remote.services.discovery.provider.configured-1.0.0.jar Downloading from repo2: https://maven.bioviz.org/repo2/org/lorainelab/igb/org.lorainelab.igb.remote.services.discovery.provider.configured/1.0.0/org.lorainelab.igb.remote.services.discovery.provider.configured-1.0.0.jar Downloaded from repo2: https://maven.bioviz.org/repo2/org/lorainelab/igb/org.lorainelab.igb.remote.services.discovery.provider.configured/1.0.0/org.lorainelab.igb.remote.services.discovery.provider.configured-1.0.0.jar (31 kB at 827 kB/s) [INFO] Configured Artifact: org.lorainelab.igb:org.lorainelab.igb.remote.services.topology.manager:1.0.0:jar Downloading from repo1: https://maven.bioviz.org/repo1/org/lorainelab/igb/org.lorainelab.igb.remote.services.topology.manager/1.0.0/org.lorainelab.igb.remote.services.topology.manager-1.0.0.jar Downloading from repo2: https://maven.bioviz.org/repo2/org/lorainelab/igb/org.lorainelab.igb.remote.services.topology.manager/1.0.0/org.lorainelab.igb.remote.services.topology.manager-1.0.0.jar Downloaded from repo2: https://maven.bioviz.org/repo2/org/lorainelab/igb/org.lorainelab.igb.remote.services.topology.manager/1.0.0/org.lorainelab.igb.remote.services.topology.manager-1.0.0.jar (23 kB at 513 kB/s) [INFO] Configured Artifact: org.lorainelab.igb:org.lorainelab.igb.remote.services.distribution.provider.http:1.0.0:jar Downloading from repo1: https://maven.bioviz.org/repo1/org/lorainelab/igb/org.lorainelab.igb.remote.services.distribution.provider.http/1.0.0/org.lorainelab.igb.remote.services.distribution.provider.http-1.0.0.jar Downloading from repo2: https://maven.bioviz.org/repo2/org/lorainelab/igb/org.lorainelab.igb.remote.services.distribution.provider.http/1.0.0/org.lorainelab.igb.remote.services.distribution.provider.http-1.0.0.jar Downloaded from repo2: https://maven.bioviz.org/repo2/org/lorainelab/igb/org.lorainelab.igb.remote.services.distribution.provider.http/1.0.0/org.lorainelab.igb.remote.services.distribution.provider.http-1.0.0.jar (58 kB at 1.6 MB/s) [INFO] Configured Artifact: com.fasterxml.jackson.core:jackson-core:2.3.5:jar Downloading from repo1: https://maven.bioviz.org/repo1/com/fasterxml/jackson/core/jackson-core/2.3.5/jackson-core-2.3.5.jar Downloading from repo2: https://maven.bioviz.org/repo2/com/fasterxml/jackson/core/jackson-core/2.3.5/jackson-core-2.3.5.jar Downloading from repo3: https://maven.bioviz.org/repo3/com/fasterxml/jackson/core/jackson-core/2.3.5/jackson-core-2.3.5.jar Downloading from maven-releases: https://nexus.bioviz.org/repository/maven-releases/com/fasterxml/jackson/core/jackson-core/2.3.5/jackson-core-2.3.5.jar Downloading from central: https://repo.maven.apache.org/maven2/com/fasterxml/jackson/core/jackson-core/2.3.5/jackson-core-2.3.5.jar Downloaded from central: https://repo.maven.apache.org/maven2/com/fasterxml/jackson/core/jackson-core/2.3.5/jackson-core-2.3.5.jar (200 kB at 6.2 MB/s) [INFO] Configured Artifact: com.fasterxml.jackson.core:jackson-annotations:2.3.5:jar Downloading from repo1: https://maven.bioviz.org/repo1/com/fasterxml/jackson/core/jackson-annotations/2.3.5/jackson-annotations-2.3.5.jar Downloading from repo2: https://maven.bioviz.org/repo2/com/fasterxml/jackson/core/jackson-annotations/2.3.5/jackson-annotations-2.3.5.jar Downloading from repo3: https://maven.bioviz.org/repo3/com/fasterxml/jackson/core/jackson-annotations/2.3.5/jackson-annotations-2.3.5.jar Downloading from maven-releases: https://nexus.bioviz.org/repository/maven-releases/com/fasterxml/jackson/core/jackson-annotations/2.3.5/jackson-annotations-2.3.5.jar Downloading from central: https://repo.maven.apache.org/maven2/com/fasterxml/jackson/core/jackson-annotations/2.3.5/jackson-annotations-2.3.5.jar Downloaded from central: https://repo.maven.apache.org/maven2/com/fasterxml/jackson/core/jackson-annotations/2.3.5/jackson-annotations-2.3.5.jar (37 kB at 3.3 MB/s) [INFO] Configured Artifact: com.fasterxml.jackson.core:jackson-databind:2.3.5:jar Downloading from repo1: https://maven.bioviz.org/repo1/com/fasterxml/jackson/core/jackson-databind/2.3.5/jackson-databind-2.3.5.jar Downloading from repo2: https://maven.bioviz.org/repo2/com/fasterxml/jackson/core/jackson-databind/2.3.5/jackson-databind-2.3.5.jar Downloading from repo3: https://maven.bioviz.org/repo3/com/fasterxml/jackson/core/jackson-databind/2.3.5/jackson-databind-2.3.5.jar Downloading from maven-releases: https://nexus.bioviz.org/repository/maven-releases/com/fasterxml/jackson/core/jackson-databind/2.3.5/jackson-databind-2.3.5.jar Downloading from central: https://repo.maven.apache.org/maven2/com/fasterxml/jackson/core/jackson-databind/2.3.5/jackson-databind-2.3.5.jar Downloaded from central: https://repo.maven.apache.org/maven2/com/fasterxml/jackson/core/jackson-databind/2.3.5/jackson-databind-2.3.5.jar (916 kB at 8.6 MB/s) [INFO] Configured Artifact: org.apache.felix:org.apache.felix.webconsole:4.3.12:jar Downloading from repo1: https://maven.bioviz.org/repo1/org/apache/felix/org.apache.felix.webconsole/4.3.12/org.apache.felix.webconsole-4.3.12.jar Downloading from repo2: https://maven.bioviz.org/repo2/org/apache/felix/org.apache.felix.webconsole/4.3.12/org.apache.felix.webconsole-4.3.12.jar Downloading from repo3: https://maven.bioviz.org/repo3/org/apache/felix/org.apache.felix.webconsole/4.3.12/org.apache.felix.webconsole-4.3.12.jar Downloading from maven-releases: https://nexus.bioviz.org/repository/maven-releases/org/apache/felix/org.apache.felix.webconsole/4.3.12/org.apache.felix.webconsole-4.3.12.jar Downloading from central: https://repo.maven.apache.org/maven2/org/apache/felix/org.apache.felix.webconsole/4.3.12/org.apache.felix.webconsole-4.3.12.jar Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/felix/org.apache.felix.webconsole/4.3.12/org.apache.felix.webconsole-4.3.12.jar (502 kB at 6.7 MB/s) [INFO] Configured Artifact: commons-fileupload:commons-fileupload:1.4:jar Downloading from repo1: https://maven.bioviz.org/repo1/commons-fileupload/commons-fileupload/1.4/commons-fileupload-1.4.jar Downloading from repo2: https://maven.bioviz.org/repo2/commons-fileupload/commons-fileupload/1.4/commons-fileupload-1.4.jar Downloading from repo3: https://maven.bioviz.org/repo3/commons-fileupload/commons-fileupload/1.4/commons-fileupload-1.4.jar Downloading from maven-releases: https://nexus.bioviz.org/repository/maven-releases/commons-fileupload/commons-fileupload/1.4/commons-fileupload-1.4.jar Downloading from central: https://repo.maven.apache.org/maven2/commons-fileupload/commons-fileupload/1.4/commons-fileupload-1.4.jar Downloaded from central: https://repo.maven.apache.org/maven2/commons-fileupload/commons-fileupload/1.4/commons-fileupload-1.4.jar (72 kB at 5.2 MB/s) [INFO] Configured Artifact: org.apache.felix:org.apache.felix.eventadmin:1.5.0:jar Downloading from repo1: https://maven.bioviz.org/repo1/org/apache/felix/org.apache.felix.eventadmin/1.5.0/org.apache.felix.eventadmin-1.5.0.jar Downloading from repo2: https://maven.bioviz.org/repo2/org/apache/felix/org.apache.felix.eventadmin/1.5.0/org.apache.felix.eventadmin-1.5.0.jar Downloading from repo3: https://maven.bioviz.org/repo3/org/apache/felix/org.apache.felix.eventadmin/1.5.0/org.apache.felix.eventadmin-1.5.0.jar Downloading from maven-releases: https://nexus.bioviz.org/repository/maven-releases/org/apache/felix/org.apache.felix.eventadmin/1.5.0/org.apache.felix.eventadmin-1.5.0.jar Downloading from central: https://repo.maven.apache.org/maven2/org/apache/felix/org.apache.felix.eventadmin/1.5.0/org.apache.felix.eventadmin-1.5.0.jar Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/felix/org.apache.felix.eventadmin/1.5.0/org.apache.felix.eventadmin-1.5.0.jar (82 kB at 3.3 MB/s) [INFO] Copying guava-16.0.1.jar to /home/admin/integrated-genome-browser/bundles/guava-16.0.1.jar [INFO] Copying commons-lang3-3.4.jar to /home/admin/integrated-genome-browser/bundles/commons-lang3-3.4.jar [INFO] Copying commons-csv-1.2.jar to /home/admin/integrated-genome-browser/bundles/commons-csv-1.2.jar [INFO] Copying commons-io-2.4.jar to /home/admin/integrated-genome-browser/bundles/commons-io-2.4.jar [INFO] Copying genoviz-1.1.9.jar to /home/admin/integrated-genome-browser/bundles/genoviz-1.1.9.jar [INFO] Copying shared-lib-wrapper-9.1.6.jar to /home/admin/integrated-genome-browser/bundles/shared-lib-wrapper-9.1.6.jar [INFO] Copying org.apache.felix.main-5.2.0.jar to /home/admin/integrated-genome-browser/bundles/felix.jar [INFO] Copying org.apache.felix.scr-1.8.2.jar to /home/admin/integrated-genome-browser/bundles/org.apache.felix.scr-1.8.2.jar [INFO] Copying org.osgi.compendium-5.0.0.jar to /home/admin/integrated-genome-browser/bundles/org.osgi.compendium-5.0.0.jar [INFO] Copying org.apache.felix.bundlerepository-2.0.10.jar to /home/admin/integrated-genome-browser/bundles/org.apache.felix.bundlerepository-2.0.10.jar [INFO] Copying bigwig-2.0.0.jar to /home/admin/integrated-genome-browser/bundles/bigwig-2.0.0.jar [INFO] Copying commons-compress-1.5.jar to /home/admin/integrated-genome-browser/bundles/commons-compress-1.5.jar [INFO] Copying commons-codec-1.6.jar to /home/admin/integrated-genome-browser/bundles/commons-codec-1.6.jar [INFO] Copying commons-pool-1.6.jar to /home/admin/integrated-genome-browser/bundles/commons-pool-1.6.jar [INFO] Copying commons-logging-1.2.jar to /home/admin/integrated-genome-browser/bundles/commons-logging-1.2.jar [INFO] Copying commons-jexl-2.1.1.jar to /home/admin/integrated-genome-browser/bundles/commons-jexl-2.1.1.jar [INFO] Copying jide-ultimate-3.5.15.jar to /home/admin/integrated-genome-browser/bundles/jide-ultimate-3.5.15.jar [INFO] Copying gson-2.3.1.jar to /home/admin/integrated-genome-browser/bundles/gson-2.3.1.jar [INFO] Copying slf4j-api-1.7.7.jar to /home/admin/integrated-genome-browser/bundles/slf4j-api-1.7.7.jar [INFO] Copying logback-core-1.1.2.jar to /home/admin/integrated-genome-browser/bundles/logback-core-1.1.2.jar [INFO] Copying logback-classic-1.1.2.jar to /home/admin/integrated-genome-browser/bundles/logback-classic-1.1.2.jar [INFO] Copying htsjdk-igb-2.16.3.jar to /home/admin/integrated-genome-browser/bundles/htsjdk-igb-2.16.3.jar [INFO] Copying org.apache.felix.http.bundle-2.3.2.jar to /home/admin/integrated-genome-browser/bundles/org.apache.felix.http.bundle-2.3.2.jar [INFO] Copying org.apache.felix.configadmin-1.8.8.jar to /home/admin/integrated-genome-browser/bundles/org.apache.felix.configadmin-1.8.8.jar [INFO] Copying org.apache.felix.fileinstall-3.5.0.jar to /home/admin/integrated-genome-browser/bundles/org.apache.felix.fileinstall-3.5.0.jar [INFO] Copying http-request-6.0.jar to /home/admin/integrated-genome-browser/bundles/http-request-6.0.jar [INFO] Copying org.lorainelab.igb.error.reporter.api-1.0.0.jar to /home/admin/integrated-genome-browser/bundles/org.lorainelab.igb.error.reporter.api-1.0.0.jar [INFO] Copying org.apache.felix.gogo.runtime-0.16.2.jar to /home/admin/integrated-genome-browser/bundles/org.apache.felix.gogo.runtime-0.16.2.jar [INFO] Copying org.apache.felix.gogo.shell-0.12.0.jar to /home/admin/integrated-genome-browser/bundles/org.apache.felix.gogo.shell-0.12.0.jar [INFO] Copying org.apache.felix.gogo.command-0.16.0.jar to /home/admin/integrated-genome-browser/bundles/org.apache.felix.gogo.command-0.16.0.jar [INFO] Copying org.apache.felix.shell.remote-1.1.2.jar to /home/admin/integrated-genome-browser/bundles/org.apache.felix.shell.remote-1.1.2.jar [INFO] Copying org.apache.felix.dependencymanager-3.2.0.jar to /home/admin/integrated-genome-browser/bundles/org.apache.felix.dependencymanager-3.2.0.jar [INFO] Copying org.apache.felix.dependencymanager.shell-3.2.0.jar to /home/admin/integrated-genome-browser/bundles/org.apache.felix.dependencymanager.shell-3.2.0.jar [INFO] Copying org.apache.felix.http.servlet-api-1.1.2.jar to /home/admin/integrated-genome-browser/bundles/org.apache.felix.http.servlet-api-1.1.2.jar [INFO] Copying org.apache.felix.http.jetty-4.0.10.jar to /home/admin/integrated-genome-browser/bundles/org.apache.felix.http.jetty-4.0.10.jar [INFO] Copying org.apache.felix.log-1.0.1.jar to /home/admin/integrated-genome-browser/bundles/org.apache.felix.log-1.0.1.jar [INFO] Copying org.osgi.service.remoteserviceadmin-1.1.0.jar to /home/admin/integrated-genome-browser/bundles/org.osgi.service.remoteserviceadmin-1.1.0.jar [INFO] Copying org.lorainelab.igb.remote.services.commons-1.0.0.jar to /home/admin/integrated-genome-browser/bundles/org.lorainelab.igb.remote.services.commons-1.0.0.jar [INFO] Copying org.lorainelab.igb.remote.services.discovery.provider.configured-1.0.0.jar to /home/admin/integrated-genome-browser/bundles/org.lorainelab.igb.remote.services.discovery.provider.configured-1.0.0.jar [INFO] Copying org.lorainelab.igb.remote.services.topology.manager-1.0.0.jar to /home/admin/integrated-genome-browser/bundles/org.lorainelab.igb.remote.services.topology.manager-1.0.0.jar [INFO] Copying org.lorainelab.igb.remote.services.distribution.provider.http-1.0.0.jar to /home/admin/integrated-genome-browser/bundles/org.lorainelab.igb.remote.services.distribution.provider.http-1.0.0.jar [INFO] Copying jackson-core-2.3.5.jar to /home/admin/integrated-genome-browser/bundles/jackson-core-2.3.5.jar [INFO] Copying jackson-annotations-2.3.5.jar to /home/admin/integrated-genome-browser/bundles/jackson-annotations-2.3.5.jar [INFO] Copying jackson-databind-2.3.5.jar to /home/admin/integrated-genome-browser/bundles/jackson-databind-2.3.5.jar [INFO] Copying org.apache.felix.webconsole-4.3.12.jar to /home/admin/integrated-genome-browser/bundles/org.apache.felix.webconsole-4.3.12.jar [INFO] Copying commons-fileupload-1.4.jar to /home/admin/integrated-genome-browser/bundles/commons-fileupload-1.4.jar [INFO] Copying org.apache.felix.eventadmin-1.5.0.jar to /home/admin/integrated-genome-browser/bundles/org.apache.felix.eventadmin-1.5.0.jar [INFO] [INFO] -----------------< org.lorainelab.igb:logging-config >------------------ [INFO] Building Core - Logging Config 9.1.6 [19/58] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ logging-config --- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ logging-config --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/admin/integrated-genome-browser/core/logging-config/src/main/java [INFO] Copying 1 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ logging-config --- [INFO] No sources to compile [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ logging-config --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/admin/integrated-genome-browser/core/logging-config/src/test/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ logging-config --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ logging-config --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ logging-config --- [INFO] [INFO] --- maven-install-plugin:3.0.0-M1:install (default-install) @ logging-config --- [INFO] Installing /home/admin/integrated-genome-browser/core/logging-config/target/logging-config-9.1.6.jar to /home/admin/.m2/repository/org/lorainelab/igb/logging-config/9.1.6/logging-config-9.1.6.jar [INFO] Installing /home/admin/integrated-genome-browser/core/logging-config/pom.xml to /home/admin/.m2/repository/org/lorainelab/igb/logging-config/9.1.6/logging-config-9.1.6.pom [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ logging-config --- [INFO] Installing org/lorainelab/igb/logging-config/9.1.6/logging-config-9.1.6.jar [INFO] Writing OBR metadata [INFO] [INFO] --- maven-dependency-plugin:2.9:copy (copy) @ logging-config --- [INFO] Configured Artifact: org.lorainelab.igb:logging-config:9.1.6:jar [INFO] Copying logging-config-9.1.6.jar to /home/admin/integrated-genome-browser/bundles/logging-config-9.1.6.jar [INFO] [INFO] --------------------< org.lorainelab.igb:weblinks >--------------------- [INFO] Building Core - Web Links 9.1.6 [20/58] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ weblinks --- [INFO] Deleting /home/admin/integrated-genome-browser/bundles/dynamic (includes = [weblinks-9.1.6.jar], excludes = []) [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ weblinks --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] Copying 5 resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ weblinks --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 10 source files to /home/admin/integrated-genome-browser/core/weblinks/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ weblinks --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/admin/integrated-genome-browser/core/weblinks/src/test/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ weblinks --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ weblinks --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ weblinks --- [INFO] [INFO] --- maven-install-plugin:3.0.0-M1:install (default-install) @ weblinks --- [INFO] Installing /home/admin/integrated-genome-browser/core/weblinks/target/weblinks-9.1.6.jar to /home/admin/.m2/repository/org/lorainelab/igb/weblinks/9.1.6/weblinks-9.1.6.jar [INFO] Installing /home/admin/integrated-genome-browser/core/weblinks/pom.xml to /home/admin/.m2/repository/org/lorainelab/igb/weblinks/9.1.6/weblinks-9.1.6.pom [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ weblinks --- [INFO] Installing org/lorainelab/igb/weblinks/9.1.6/weblinks-9.1.6.jar [INFO] Writing OBR metadata [INFO] [INFO] --- maven-dependency-plugin:2.9:copy (copy) @ weblinks --- [INFO] Configured Artifact: org.lorainelab.igb:weblinks:9.1.6:jar [INFO] Copying weblinks-9.1.6.jar to /home/admin/integrated-genome-browser/bundles/dynamic/weblinks-9.1.6.jar [INFO] [INFO] ----------------------< org.lorainelab.igb:cache >---------------------- [INFO] Building Plugin - Data caching GUI 9.1.6 [21/58] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ cache --- [INFO] Deleting /home/admin/integrated-genome-browser/bundles/dynamic (includes = [cache-9.1.6.jar], excludes = []) [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ cache --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] skip non existing resourceDirectory /home/admin/integrated-genome-browser/plugins/cache/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ cache --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 3 source files to /home/admin/integrated-genome-browser/plugins/cache/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ cache --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ cache --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 1 source file to /home/admin/integrated-genome-browser/plugins/cache/target/test-classes [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cache --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ cache --- [INFO] [INFO] --- maven-install-plugin:3.0.0-M1:install (default-install) @ cache --- [INFO] Installing /home/admin/integrated-genome-browser/plugins/cache/target/cache-9.1.6.jar to /home/admin/.m2/repository/org/lorainelab/igb/cache/9.1.6/cache-9.1.6.jar [INFO] Installing /home/admin/integrated-genome-browser/plugins/cache/pom.xml to /home/admin/.m2/repository/org/lorainelab/igb/cache/9.1.6/cache-9.1.6.pom [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ cache --- [INFO] Installing org/lorainelab/igb/cache/9.1.6/cache-9.1.6.jar [INFO] Writing OBR metadata [INFO] [INFO] --- maven-dependency-plugin:2.9:copy (copy) @ cache --- [INFO] Configured Artifact: org.lorainelab.igb:cache:9.1.6:jar [INFO] Copying cache-9.1.6.jar to /home/admin/integrated-genome-browser/bundles/dynamic/cache-9.1.6.jar [INFO] [INFO] --------------------< org.lorainelab.igb:quickload >-------------------- [INFO] Building Core - Quickload (data source) 9.1.6 [22/58] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ quickload --- [INFO] Deleting /home/admin/integrated-genome-browser/bundles/dynamic (includes = [quickload-9.1.6.jar], excludes = []) [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ quickload --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] Copying 1 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ quickload --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 7 source files to /home/admin/integrated-genome-browser/core/quickload/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ quickload --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 4 resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ quickload --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 3 source files to /home/admin/integrated-genome-browser/core/quickload/target/test-classes [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ quickload --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ quickload --- [INFO] [INFO] --- maven-install-plugin:3.0.0-M1:install (default-install) @ quickload --- [INFO] Installing /home/admin/integrated-genome-browser/core/quickload/target/quickload-9.1.6.jar to /home/admin/.m2/repository/org/lorainelab/igb/quickload/9.1.6/quickload-9.1.6.jar [INFO] Installing /home/admin/integrated-genome-browser/core/quickload/pom.xml to /home/admin/.m2/repository/org/lorainelab/igb/quickload/9.1.6/quickload-9.1.6.pom [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ quickload --- [INFO] Installing org/lorainelab/igb/quickload/9.1.6/quickload-9.1.6.jar [INFO] Writing OBR metadata [INFO] [INFO] --- maven-dependency-plugin:2.9:copy (copy) @ quickload --- [INFO] Configured Artifact: org.lorainelab.igb:quickload:9.1.6:jar [INFO] Copying quickload-9.1.6.jar to /home/admin/integrated-genome-browser/bundles/dynamic/quickload-9.1.6.jar [INFO] [INFO] -----------------------< org.lorainelab.igb:das >----------------------- [INFO] Building Core - DAS (data source) 9.1.6 [23/58] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ das --- [INFO] Deleting /home/admin/integrated-genome-browser/bundles/dynamic (includes = [das-9.1.6.jar], excludes = []) [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ das --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] skip non existing resourceDirectory /home/admin/integrated-genome-browser/core/das/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ das --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 33 source files to /home/admin/integrated-genome-browser/core/das/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ das --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 3 resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ das --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 3 source files to /home/admin/integrated-genome-browser/core/das/target/test-classes [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ das --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ das --- [INFO] [INFO] --- maven-install-plugin:3.0.0-M1:install (default-install) @ das --- [INFO] Installing /home/admin/integrated-genome-browser/core/das/target/das-9.1.6.jar to /home/admin/.m2/repository/org/lorainelab/igb/das/9.1.6/das-9.1.6.jar [INFO] Installing /home/admin/integrated-genome-browser/core/das/pom.xml to /home/admin/.m2/repository/org/lorainelab/igb/das/9.1.6/das-9.1.6.pom [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ das --- [INFO] Installing org/lorainelab/igb/das/9.1.6/das-9.1.6.jar [INFO] Writing OBR metadata [INFO] [INFO] --- maven-dependency-plugin:2.9:copy (copy) @ das --- [INFO] Configured Artifact: org.lorainelab.igb:das:9.1.6:jar [INFO] Copying das-9.1.6.jar to /home/admin/integrated-genome-browser/bundles/dynamic/das-9.1.6.jar [INFO] [INFO] ----------------------< org.lorainelab.igb:das2 >----------------------- [INFO] Building Core - Das 2 (data source) 9.1.6 [24/58] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ das2 --- [INFO] Deleting /home/admin/integrated-genome-browser/bundles/dynamic (includes = [das2-9.1.6.jar], excludes = []) [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ das2 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] skip non existing resourceDirectory /home/admin/integrated-genome-browser/core/das2/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ das2 --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 16 source files to /home/admin/integrated-genome-browser/core/das2/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ das2 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/admin/integrated-genome-browser/core/das2/src/test/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ das2 --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 2 source files to /home/admin/integrated-genome-browser/core/das2/target/test-classes [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ das2 --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ das2 --- [INFO] [INFO] --- maven-install-plugin:3.0.0-M1:install (default-install) @ das2 --- [INFO] Installing /home/admin/integrated-genome-browser/core/das2/target/das2-9.1.6.jar to /home/admin/.m2/repository/org/lorainelab/igb/das2/9.1.6/das2-9.1.6.jar [INFO] Installing /home/admin/integrated-genome-browser/core/das2/pom.xml to /home/admin/.m2/repository/org/lorainelab/igb/das2/9.1.6/das2-9.1.6.pom [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ das2 --- [INFO] Installing org/lorainelab/igb/das2/9.1.6/das2-9.1.6.jar [INFO] Writing OBR metadata [INFO] [INFO] --- maven-dependency-plugin:2.9:copy (copy) @ das2 --- [INFO] Configured Artifact: org.lorainelab.igb:das2:9.1.6:jar [INFO] Copying das2-9.1.6.jar to /home/admin/integrated-genome-browser/bundles/dynamic/das2-9.1.6.jar [INFO] [INFO] -----------------< org.lorainelab.igb:apollo-library >------------------ [INFO] Building Plugin - Apollo Library 9.1.6 [25/58] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ apollo-library --- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ apollo-library --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] Copying 0 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ apollo-library --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 17 source files to /home/admin/integrated-genome-browser/plugins/ApolloLibrary/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ apollo-library --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ apollo-library --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ apollo-library --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ apollo-library --- [INFO] [INFO] --- maven-install-plugin:3.0.0-M1:install (default-install) @ apollo-library --- [INFO] Installing /home/admin/integrated-genome-browser/plugins/ApolloLibrary/target/apollo-library-9.1.6.jar to /home/admin/.m2/repository/org/lorainelab/igb/apollo-library/9.1.6/apollo-library-9.1.6.jar [INFO] Installing /home/admin/integrated-genome-browser/plugins/ApolloLibrary/pom.xml to /home/admin/.m2/repository/org/lorainelab/igb/apollo-library/9.1.6/apollo-library-9.1.6.pom [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ apollo-library --- [INFO] Installing org/lorainelab/igb/apollo-library/9.1.6/apollo-library-9.1.6.jar [INFO] Writing OBR metadata [INFO] [INFO] --- maven-dependency-plugin:2.9:copy (copy) @ apollo-library --- [INFO] Configured Artifact: org.lorainelab.igb:apollo-library:9.1.6:jar [INFO] Copying apollo-library-9.1.6.jar to /home/admin/integrated-genome-browser/bundles/apollo-library-9.1.6.jar [INFO] [INFO] -------------< org.lorainelab.igb:track-operations-panel >-------------- [INFO] Building Plugin - Track Operations API, GUI 9.1.6 [26/58] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ track-operations-panel --- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ track-operations-panel --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] Copying 1 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ track-operations-panel --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 8 source files to /home/admin/integrated-genome-browser/plugins/track-operations-panel/target/classes Note: /home/admin/integrated-genome-browser/plugins/track-operations-panel/src/main/java/org/lorainelab/igb/track/operations/api/OperationsPanel.java uses unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ track-operations-panel --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ track-operations-panel --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ track-operations-panel --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ track-operations-panel --- [WARNING] Bundle org.lorainelab.igb:track-operations-panel:bundle:9.1.6 : Export org.lorainelab.igb.track.operations.api, has 1, private references [org.lorainelab.igb.track.operations], [INFO] [INFO] --- maven-install-plugin:3.0.0-M1:install (default-install) @ track-operations-panel --- [INFO] Installing /home/admin/integrated-genome-browser/plugins/track-operations-panel/target/track-operations-panel-9.1.6.jar to /home/admin/.m2/repository/org/lorainelab/igb/track-operations-panel/9.1.6/track-operations-panel-9.1.6.jar [INFO] Installing /home/admin/integrated-genome-browser/plugins/track-operations-panel/pom.xml to /home/admin/.m2/repository/org/lorainelab/igb/track-operations-panel/9.1.6/track-operations-panel-9.1.6.pom [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ track-operations-panel --- [INFO] Installing org/lorainelab/igb/track-operations-panel/9.1.6/track-operations-panel-9.1.6.jar [INFO] Writing OBR metadata [INFO] [INFO] --- maven-dependency-plugin:2.9:copy (copy) @ track-operations-panel --- [INFO] Configured Artifact: org.lorainelab.igb:track-operations-panel:9.1.6:jar [INFO] Copying track-operations-panel-9.1.6.jar to /home/admin/integrated-genome-browser/bundles/track-operations-panel-9.1.6.jar [INFO] [INFO] -----------------< org.lorainelab.igb:annotation-tab >------------------ [INFO] Building Plugin - Annotation Tab 9.1.6 [27/58] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ annotation-tab --- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ annotation-tab --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] Copying 1 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ annotation-tab --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 3 source files to /home/admin/integrated-genome-browser/plugins/AnnotationTab/target/classes Note: /home/admin/integrated-genome-browser/plugins/AnnotationTab/src/main/java/com/affymetrix/igb/tabs/annotation/AnnotationPanelImpl.java uses unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ annotation-tab --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ annotation-tab --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ annotation-tab --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ annotation-tab --- [INFO] [INFO] --- maven-install-plugin:3.0.0-M1:install (default-install) @ annotation-tab --- [INFO] Installing /home/admin/integrated-genome-browser/plugins/AnnotationTab/target/annotation-tab-9.1.6.jar to /home/admin/.m2/repository/org/lorainelab/igb/annotation-tab/9.1.6/annotation-tab-9.1.6.jar [INFO] Installing /home/admin/integrated-genome-browser/plugins/AnnotationTab/pom.xml to /home/admin/.m2/repository/org/lorainelab/igb/annotation-tab/9.1.6/annotation-tab-9.1.6.pom [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ annotation-tab --- [INFO] Installing org/lorainelab/igb/annotation-tab/9.1.6/annotation-tab-9.1.6.jar [INFO] Writing OBR metadata [INFO] [INFO] --- maven-dependency-plugin:2.9:copy (copy) @ annotation-tab --- [INFO] Configured Artifact: org.lorainelab.igb:annotation-tab:9.1.6:jar [INFO] Copying annotation-tab-9.1.6.jar to /home/admin/integrated-genome-browser/bundles/annotation-tab-9.1.6.jar [INFO] [INFO] -------------------< org.lorainelab.igb:console-tab >------------------- [INFO] Building Plugin - Console Tab 9.1.6 [28/58] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ console-tab --- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ console-tab --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] Copying 1 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ console-tab --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 3 source files to /home/admin/integrated-genome-browser/plugins/ConsoleTab/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ console-tab --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ console-tab --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ console-tab --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ console-tab --- [INFO] [INFO] --- maven-install-plugin:3.0.0-M1:install (default-install) @ console-tab --- [INFO] Installing /home/admin/integrated-genome-browser/plugins/ConsoleTab/target/console-tab-9.1.6.jar to /home/admin/.m2/repository/org/lorainelab/igb/console-tab/9.1.6/console-tab-9.1.6.jar [INFO] Installing /home/admin/integrated-genome-browser/plugins/ConsoleTab/pom.xml to /home/admin/.m2/repository/org/lorainelab/igb/console-tab/9.1.6/console-tab-9.1.6.pom [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ console-tab --- [INFO] Installing org/lorainelab/igb/console-tab/9.1.6/console-tab-9.1.6.jar [INFO] Writing OBR metadata [INFO] [INFO] --- maven-dependency-plugin:2.9:copy (copy) @ console-tab --- [INFO] Configured Artifact: org.lorainelab.igb:console-tab:9.1.6:jar [INFO] Copying console-tab-9.1.6.jar to /home/admin/integrated-genome-browser/bundles/console-tab-9.1.6.jar [INFO] [INFO] ------------------< org.lorainelab.igb:bigBedHandler >------------------ [INFO] Building Plugin - Bigbed data format handler 9.1.6 [29/58] [INFO] -------------------------------[ bundle ]------------------------------- Downloading from repo1: https://maven.bioviz.org/repo1/org/broad/igv/bigwig/2.0.0/bigwig-2.0.0.pom Downloading from repo2: https://maven.bioviz.org/repo2/org/broad/igv/bigwig/2.0.0/bigwig-2.0.0.pom Downloading from repo3: https://maven.bioviz.org/repo3/org/broad/igv/bigwig/2.0.0/bigwig-2.0.0.pom Downloading from maven-releases: https://nexus.bioviz.org/repository/maven-releases/org/broad/igv/bigwig/2.0.0/bigwig-2.0.0.pom Downloaded from maven-releases: https://nexus.bioviz.org/repository/maven-releases/org/broad/igv/bigwig/2.0.0/bigwig-2.0.0.pom (1.3 kB at 31 kB/s) [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ bigBedHandler --- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ bigBedHandler --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] Copying 0 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ bigBedHandler --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 2 source files to /home/admin/integrated-genome-browser/plugins/BigBedHandler/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ bigBedHandler --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ bigBedHandler --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ bigBedHandler --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ bigBedHandler --- [INFO] [INFO] --- maven-install-plugin:3.0.0-M1:install (default-install) @ bigBedHandler --- [INFO] Installing /home/admin/integrated-genome-browser/plugins/BigBedHandler/target/bigBedHandler-9.1.6.jar to /home/admin/.m2/repository/org/lorainelab/igb/bigBedHandler/9.1.6/bigBedHandler-9.1.6.jar [INFO] Installing /home/admin/integrated-genome-browser/plugins/BigBedHandler/pom.xml to /home/admin/.m2/repository/org/lorainelab/igb/bigBedHandler/9.1.6/bigBedHandler-9.1.6.pom [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ bigBedHandler --- [INFO] Installing org/lorainelab/igb/bigBedHandler/9.1.6/bigBedHandler-9.1.6.jar [INFO] Writing OBR metadata [INFO] [INFO] --- maven-dependency-plugin:2.9:copy (copy) @ bigBedHandler --- [INFO] Configured Artifact: org.lorainelab.igb:bigBedHandler:9.1.6:jar [INFO] Copying bigBedHandler-9.1.6.jar to /home/admin/integrated-genome-browser/bundles/bigBedHandler-9.1.6.jar [INFO] [INFO] ------------------< org.lorainelab.igb:bigWigHandler >------------------ [INFO] Building Plugin - Bigwig data format handler 9.1.6 [30/58] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ bigWigHandler --- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ bigWigHandler --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] Copying 0 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ bigWigHandler --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 3 source files to /home/admin/integrated-genome-browser/plugins/BigWigHandler/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ bigWigHandler --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ bigWigHandler --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ bigWigHandler --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ bigWigHandler --- [INFO] [INFO] --- maven-install-plugin:3.0.0-M1:install (default-install) @ bigWigHandler --- [INFO] Installing /home/admin/integrated-genome-browser/plugins/BigWigHandler/target/bigWigHandler-9.1.6.jar to /home/admin/.m2/repository/org/lorainelab/igb/bigWigHandler/9.1.6/bigWigHandler-9.1.6.jar [INFO] Installing /home/admin/integrated-genome-browser/plugins/BigWigHandler/pom.xml to /home/admin/.m2/repository/org/lorainelab/igb/bigWigHandler/9.1.6/bigWigHandler-9.1.6.pom [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ bigWigHandler --- [INFO] Installing org/lorainelab/igb/bigWigHandler/9.1.6/bigWigHandler-9.1.6.jar [INFO] Writing OBR metadata [INFO] [INFO] --- maven-dependency-plugin:2.9:copy (copy) @ bigWigHandler --- [INFO] Configured Artifact: org.lorainelab.igb:bigWigHandler:9.1.6:jar [INFO] Copying bigWigHandler-9.1.6.jar to /home/admin/integrated-genome-browser/bundles/bigWigHandler-9.1.6.jar [INFO] [INFO] --------------------< org.lorainelab.igb:bookmark >--------------------- [INFO] Building Plugin - Bookmarks and REST API 9.1.6 [31/58] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ bookmark --- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ bookmark --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] Copying 2 resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ bookmark --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 32 source files to /home/admin/integrated-genome-browser/plugins/Bookmark/target/classes Note: /home/admin/integrated-genome-browser/plugins/Bookmark/src/main/java/com/affymetrix/igb/bookmarks/Activator.java uses or overrides a deprecated API. Note: Recompile with -Xlint:deprecation for details. Note: /home/admin/integrated-genome-browser/plugins/Bookmark/src/main/java/com/affymetrix/igb/bookmarks/BookmarkController.java uses unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ bookmark --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ bookmark --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 1 source file to /home/admin/integrated-genome-browser/plugins/Bookmark/target/test-classes [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ bookmark --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ bookmark --- [INFO] [INFO] --- maven-install-plugin:3.0.0-M1:install (default-install) @ bookmark --- [INFO] Installing /home/admin/integrated-genome-browser/plugins/Bookmark/target/bookmark-9.1.6.jar to /home/admin/.m2/repository/org/lorainelab/igb/bookmark/9.1.6/bookmark-9.1.6.jar [INFO] Installing /home/admin/integrated-genome-browser/plugins/Bookmark/pom.xml to /home/admin/.m2/repository/org/lorainelab/igb/bookmark/9.1.6/bookmark-9.1.6.pom [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ bookmark --- [INFO] Installing org/lorainelab/igb/bookmark/9.1.6/bookmark-9.1.6.jar [INFO] Writing OBR metadata [INFO] [INFO] --- maven-dependency-plugin:2.9:copy (copy) @ bookmark --- [INFO] Configured Artifact: org.lorainelab.igb:bookmark:9.1.6:jar [INFO] Copying bookmark-9.1.6.jar to /home/admin/integrated-genome-browser/bundles/bookmark-9.1.6.jar [INFO] [INFO] ------------------< org.lorainelab.igb:externalView >------------------- [INFO] Building Plugin - External View 9.1.6 [32/58] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ externalView --- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ externalView --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] Copying 3 resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ externalView --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 12 source files to /home/admin/integrated-genome-browser/plugins/ExternalView/target/classes Note: /home/admin/integrated-genome-browser/plugins/ExternalView/src/main/java/com/affymetrix/igb/external/ExternalViewer.java uses unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ externalView --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ externalView --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 1 source file to /home/admin/integrated-genome-browser/plugins/ExternalView/target/test-classes [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ externalView --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ externalView --- [INFO] [INFO] --- maven-install-plugin:3.0.0-M1:install (default-install) @ externalView --- [INFO] Installing /home/admin/integrated-genome-browser/plugins/ExternalView/target/externalView-9.1.6.jar to /home/admin/.m2/repository/org/lorainelab/igb/externalView/9.1.6/externalView-9.1.6.jar [INFO] Installing /home/admin/integrated-genome-browser/plugins/ExternalView/pom.xml to /home/admin/.m2/repository/org/lorainelab/igb/externalView/9.1.6/externalView-9.1.6.pom [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ externalView --- [INFO] Installing org/lorainelab/igb/externalView/9.1.6/externalView-9.1.6.jar [INFO] Writing OBR metadata [INFO] [INFO] --- maven-dependency-plugin:2.9:copy (copy) @ externalView --- [INFO] Configured Artifact: org.lorainelab.igb:externalView:9.1.6:jar [INFO] Copying externalView-9.1.6.jar to /home/admin/integrated-genome-browser/bundles/externalView-9.1.6.jar [INFO] [INFO] --------------------< org.lorainelab.igb:graphTab >--------------------- [INFO] Building Plugin - Graph Tab 9.1.6 [33/58] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ graphTab --- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ graphTab --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] Copying 1 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ graphTab --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 4 source files to /home/admin/integrated-genome-browser/plugins/GraphTab/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ graphTab --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ graphTab --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ graphTab --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ graphTab --- [INFO] [INFO] --- maven-install-plugin:3.0.0-M1:install (default-install) @ graphTab --- [INFO] Installing /home/admin/integrated-genome-browser/plugins/GraphTab/target/graphTab-9.1.6.jar to /home/admin/.m2/repository/org/lorainelab/igb/graphTab/9.1.6/graphTab-9.1.6.jar [INFO] Installing /home/admin/integrated-genome-browser/plugins/GraphTab/pom.xml to /home/admin/.m2/repository/org/lorainelab/igb/graphTab/9.1.6/graphTab-9.1.6.pom [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ graphTab --- [INFO] Installing org/lorainelab/igb/graphTab/9.1.6/graphTab-9.1.6.jar [INFO] Writing OBR metadata [INFO] [INFO] --- maven-dependency-plugin:2.9:copy (copy) @ graphTab --- [INFO] Configured Artifact: org.lorainelab.igb:graphTab:9.1.6:jar [INFO] Copying graphTab-9.1.6.jar to /home/admin/integrated-genome-browser/bundles/graphTab-9.1.6.jar [INFO] [INFO] -----------------< org.lorainelab.igb:image-exporter >------------------ [INFO] Building Plugin - Save Image GUI 9.1.6 [34/58] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ image-exporter --- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ image-exporter --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] Copying 2 resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ image-exporter --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 9 source files to /home/admin/integrated-genome-browser/plugins/image-exporter/target/classes Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ image-exporter --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/admin/integrated-genome-browser/plugins/image-exporter/src/test/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ image-exporter --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 1 source file to /home/admin/integrated-genome-browser/plugins/image-exporter/target/test-classes [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ image-exporter --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ image-exporter --- [INFO] [INFO] --- maven-install-plugin:3.0.0-M1:install (default-install) @ image-exporter --- [INFO] Installing /home/admin/integrated-genome-browser/plugins/image-exporter/target/image-exporter-9.1.6.jar to /home/admin/.m2/repository/org/lorainelab/igb/image-exporter/9.1.6/image-exporter-9.1.6.jar [INFO] Installing /home/admin/integrated-genome-browser/plugins/image-exporter/pom.xml to /home/admin/.m2/repository/org/lorainelab/igb/image-exporter/9.1.6/image-exporter-9.1.6.pom [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ image-exporter --- [INFO] Installing org/lorainelab/igb/image-exporter/9.1.6/image-exporter-9.1.6.jar [INFO] Writing OBR metadata [INFO] [INFO] --- maven-dependency-plugin:2.9:copy (copy) @ image-exporter --- [INFO] Configured Artifact: org.lorainelab.igb:image-exporter:9.1.6:jar [INFO] Copying image-exporter-9.1.6.jar to /home/admin/integrated-genome-browser/bundles/image-exporter-9.1.6.jar [INFO] [INFO] --------------------< org.lorainelab.igb:igbScript >-------------------- [INFO] Building Plugin - Script handler 9.1.6 [35/58] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ igbScript --- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ igbScript --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] Copying 0 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ igbScript --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 3 source files to /home/admin/integrated-genome-browser/plugins/IGBScript/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ igbScript --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ igbScript --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ igbScript --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ igbScript --- [INFO] [INFO] --- maven-install-plugin:3.0.0-M1:install (default-install) @ igbScript --- [INFO] Installing /home/admin/integrated-genome-browser/plugins/IGBScript/target/igbScript-9.1.6.jar to /home/admin/.m2/repository/org/lorainelab/igb/igbScript/9.1.6/igbScript-9.1.6.jar [INFO] Installing /home/admin/integrated-genome-browser/plugins/IGBScript/pom.xml to /home/admin/.m2/repository/org/lorainelab/igb/igbScript/9.1.6/igbScript-9.1.6.pom [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ igbScript --- [INFO] Installing org/lorainelab/igb/igbScript/9.1.6/igbScript-9.1.6.jar [INFO] Writing OBR metadata [INFO] [INFO] --- maven-dependency-plugin:2.9:copy (copy) @ igbScript --- [INFO] Configured Artifact: org.lorainelab.igb:igbScript:9.1.6:jar [INFO] Copying igbScript-9.1.6.jar to /home/admin/integrated-genome-browser/bundles/igbScript-9.1.6.jar [INFO] [INFO] ------------------< org.lorainelab.igb:keyWordSearch >------------------ [INFO] Building Plugin - Keyword Search 9.1.6 [36/58] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ keyWordSearch --- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ keyWordSearch --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] Copying 1 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ keyWordSearch --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 1 source file to /home/admin/integrated-genome-browser/plugins/KeyWordSearch/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ keyWordSearch --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ keyWordSearch --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ keyWordSearch --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ keyWordSearch --- [INFO] [INFO] --- maven-install-plugin:3.0.0-M1:install (default-install) @ keyWordSearch --- [INFO] Installing /home/admin/integrated-genome-browser/plugins/KeyWordSearch/target/keyWordSearch-9.1.6.jar to /home/admin/.m2/repository/org/lorainelab/igb/keyWordSearch/9.1.6/keyWordSearch-9.1.6.jar [INFO] Installing /home/admin/integrated-genome-browser/plugins/KeyWordSearch/pom.xml to /home/admin/.m2/repository/org/lorainelab/igb/keyWordSearch/9.1.6/keyWordSearch-9.1.6.pom [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ keyWordSearch --- [INFO] Installing org/lorainelab/igb/keyWordSearch/9.1.6/keyWordSearch-9.1.6.jar [INFO] Writing OBR metadata [INFO] [INFO] --- maven-dependency-plugin:2.9:copy (copy) @ keyWordSearch --- [INFO] Configured Artifact: org.lorainelab.igb:keyWordSearch:9.1.6:jar [INFO] Copying keyWordSearch-9.1.6.jar to /home/admin/integrated-genome-browser/bundles/keyWordSearch-9.1.6.jar [INFO] [INFO] --------------------< org.lorainelab.igb:ncbiBlast >-------------------- [INFO] Building Plugin - NCBI Blast 9.1.6 [37/58] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ ncbiBlast --- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ ncbiBlast --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] Copying 1 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ ncbiBlast --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 11 source files to /home/admin/integrated-genome-browser/plugins/NCBIBlast/target/classes Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ ncbiBlast --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ ncbiBlast --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 1 source file to /home/admin/integrated-genome-browser/plugins/NCBIBlast/target/test-classes [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ ncbiBlast --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ ncbiBlast --- [INFO] [INFO] --- maven-install-plugin:3.0.0-M1:install (default-install) @ ncbiBlast --- [INFO] Installing /home/admin/integrated-genome-browser/plugins/NCBIBlast/target/ncbiBlast-9.1.6.jar to /home/admin/.m2/repository/org/lorainelab/igb/ncbiBlast/9.1.6/ncbiBlast-9.1.6.jar [INFO] Installing /home/admin/integrated-genome-browser/plugins/NCBIBlast/pom.xml to /home/admin/.m2/repository/org/lorainelab/igb/ncbiBlast/9.1.6/ncbiBlast-9.1.6.pom [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ ncbiBlast --- [INFO] Installing org/lorainelab/igb/ncbiBlast/9.1.6/ncbiBlast-9.1.6.jar [INFO] Writing OBR metadata [INFO] [INFO] --- maven-dependency-plugin:2.9:copy (copy) @ ncbiBlast --- [INFO] Configured Artifact: org.lorainelab.igb:ncbiBlast:9.1.6:jar [INFO] Copying ncbiBlast-9.1.6.jar to /home/admin/integrated-genome-browser/bundles/ncbiBlast-9.1.6.jar [INFO] [INFO] ------------------< org.lorainelab.igb:propertyView >------------------- [INFO] Building Plugin - Selection Info tab 9.1.6 [38/58] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ propertyView --- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ propertyView --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] Copying 1 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ propertyView --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 3 source files to /home/admin/integrated-genome-browser/plugins/PropertyView/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ propertyView --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ propertyView --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ propertyView --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ propertyView --- [INFO] [INFO] --- maven-install-plugin:3.0.0-M1:install (default-install) @ propertyView --- [INFO] Installing /home/admin/integrated-genome-browser/plugins/PropertyView/target/propertyView-9.1.6.jar to /home/admin/.m2/repository/org/lorainelab/igb/propertyView/9.1.6/propertyView-9.1.6.jar [INFO] Installing /home/admin/integrated-genome-browser/plugins/PropertyView/pom.xml to /home/admin/.m2/repository/org/lorainelab/igb/propertyView/9.1.6/propertyView-9.1.6.pom [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ propertyView --- [INFO] Installing org/lorainelab/igb/propertyView/9.1.6/propertyView-9.1.6.jar [INFO] Writing OBR metadata [INFO] [INFO] --- maven-dependency-plugin:2.9:copy (copy) @ propertyView --- [INFO] Configured Artifact: org.lorainelab.igb:propertyView:9.1.6:jar [INFO] Copying propertyView-9.1.6.jar to /home/admin/integrated-genome-browser/bundles/propertyView-9.1.6.jar [INFO] [INFO] ----------------< org.lorainelab.igb:restrictionSites >----------------- [INFO] Building Plugin - Restriction Sites tab 9.1.6 [39/58] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ restrictionSites --- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ restrictionSites --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] Copying 2 resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ restrictionSites --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 1 source file to /home/admin/integrated-genome-browser/plugins/RestrictionSites/target/classes Note: /home/admin/integrated-genome-browser/plugins/RestrictionSites/src/main/java/com/affymetrix/igb/restrictions/RestrictionControlView.java uses unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ restrictionSites --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ restrictionSites --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ restrictionSites --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ restrictionSites --- [INFO] [INFO] --- maven-install-plugin:3.0.0-M1:install (default-install) @ restrictionSites --- [INFO] Installing /home/admin/integrated-genome-browser/plugins/RestrictionSites/target/restrictionSites-9.1.6.jar to /home/admin/.m2/repository/org/lorainelab/igb/restrictionSites/9.1.6/restrictionSites-9.1.6.jar [INFO] Installing /home/admin/integrated-genome-browser/plugins/RestrictionSites/pom.xml to /home/admin/.m2/repository/org/lorainelab/igb/restrictionSites/9.1.6/restrictionSites-9.1.6.pom [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ restrictionSites --- [INFO] Installing org/lorainelab/igb/restrictionSites/9.1.6/restrictionSites-9.1.6.jar [INFO] Writing OBR metadata [INFO] [INFO] --- maven-dependency-plugin:2.9:copy (copy) @ restrictionSites --- [INFO] Configured Artifact: org.lorainelab.igb:restrictionSites:9.1.6:jar [INFO] Copying restrictionSites-9.1.6.jar to /home/admin/integrated-genome-browser/bundles/restrictionSites-9.1.6.jar [INFO] [INFO] --------------< org.lorainelab.igb:searchModelIdOrProps >--------------- [INFO] Building Plugin - Search Id or Props 9.1.6 [40/58] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ searchModelIdOrProps --- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ searchModelIdOrProps --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] Copying 1 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ searchModelIdOrProps --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 4 source files to /home/admin/integrated-genome-browser/plugins/SearchModeIdOrProps/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ searchModelIdOrProps --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ searchModelIdOrProps --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ searchModelIdOrProps --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ searchModelIdOrProps --- [INFO] [INFO] --- maven-install-plugin:3.0.0-M1:install (default-install) @ searchModelIdOrProps --- [INFO] Installing /home/admin/integrated-genome-browser/plugins/SearchModeIdOrProps/target/searchModelIdOrProps-9.1.6.jar to /home/admin/.m2/repository/org/lorainelab/igb/searchModelIdOrProps/9.1.6/searchModelIdOrProps-9.1.6.jar [INFO] Installing /home/admin/integrated-genome-browser/plugins/SearchModeIdOrProps/pom.xml to /home/admin/.m2/repository/org/lorainelab/igb/searchModelIdOrProps/9.1.6/searchModelIdOrProps-9.1.6.pom [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ searchModelIdOrProps --- [INFO] Installing org/lorainelab/igb/searchModelIdOrProps/9.1.6/searchModelIdOrProps-9.1.6.jar [INFO] Writing OBR metadata [INFO] [INFO] --- maven-dependency-plugin:2.9:copy (copy) @ searchModelIdOrProps --- [INFO] Configured Artifact: org.lorainelab.igb:searchModelIdOrProps:9.1.6:jar [INFO] Copying searchModelIdOrProps-9.1.6.jar to /home/admin/integrated-genome-browser/bundles/searchModelIdOrProps-9.1.6.jar [INFO] [INFO] -------------------< org.lorainelab.igb:searchView >-------------------- [INFO] Building Plugin - Advanced Search Tab 9.1.6 [41/58] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ searchView --- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ searchView --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] Copying 2 resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ searchView --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 5 source files to /home/admin/integrated-genome-browser/plugins/SearchView/target/classes Note: /home/admin/integrated-genome-browser/plugins/SearchView/src/main/java/com/affymetrix/igb/search/SearchView.java uses unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ searchView --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ searchView --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ searchView --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ searchView --- [INFO] [INFO] --- maven-install-plugin:3.0.0-M1:install (default-install) @ searchView --- [INFO] Installing /home/admin/integrated-genome-browser/plugins/SearchView/target/searchView-9.1.6.jar to /home/admin/.m2/repository/org/lorainelab/igb/searchView/9.1.6/searchView-9.1.6.jar [INFO] Installing /home/admin/integrated-genome-browser/plugins/SearchView/pom.xml to /home/admin/.m2/repository/org/lorainelab/igb/searchView/9.1.6/searchView-9.1.6.pom [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ searchView --- [INFO] Installing org/lorainelab/igb/searchView/9.1.6/searchView-9.1.6.jar [INFO] Writing OBR metadata [INFO] [INFO] --- maven-dependency-plugin:2.9:copy (copy) @ searchView --- [INFO] Configured Artifact: org.lorainelab.igb:searchView:9.1.6:jar [INFO] Copying searchView-9.1.6.jar to /home/admin/integrated-genome-browser/bundles/searchView-9.1.6.jar [INFO] [INFO] -----------------< org.lorainelab.igb:sequenceViewer >------------------ [INFO] Building Plugin - Sequence Viewer GUI 9.1.6 [42/58] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ sequenceViewer --- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ sequenceViewer --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] Copying 3 resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ sequenceViewer --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 11 source files to /home/admin/integrated-genome-browser/plugins/SequenceViewer/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ sequenceViewer --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ sequenceViewer --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ sequenceViewer --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ sequenceViewer --- [INFO] [INFO] --- maven-install-plugin:3.0.0-M1:install (default-install) @ sequenceViewer --- [INFO] Installing /home/admin/integrated-genome-browser/plugins/SequenceViewer/target/sequenceViewer-9.1.6.jar to /home/admin/.m2/repository/org/lorainelab/igb/sequenceViewer/9.1.6/sequenceViewer-9.1.6.jar [INFO] Installing /home/admin/integrated-genome-browser/plugins/SequenceViewer/pom.xml to /home/admin/.m2/repository/org/lorainelab/igb/sequenceViewer/9.1.6/sequenceViewer-9.1.6.pom [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ sequenceViewer --- [INFO] Installing org/lorainelab/igb/sequenceViewer/9.1.6/sequenceViewer-9.1.6.jar [INFO] Writing OBR metadata [INFO] [INFO] --- maven-dependency-plugin:2.9:copy (copy) @ sequenceViewer --- [INFO] Configured Artifact: org.lorainelab.igb:sequenceViewer:9.1.6:jar [INFO] Copying sequenceViewer-9.1.6.jar to /home/admin/integrated-genome-browser/bundles/sequenceViewer-9.1.6.jar [INFO] [INFO] ---------------------< org.lorainelab.igb:survey >---------------------- [INFO] Building Plugin - Survey GUI 9.1.6 [43/58] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ survey --- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ survey --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] Copying 2 resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ survey --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 5 source files to /home/admin/integrated-genome-browser/plugins/Survey/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ survey --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ survey --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ survey --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ survey --- [INFO] [INFO] --- maven-install-plugin:3.0.0-M1:install (default-install) @ survey --- [INFO] Installing /home/admin/integrated-genome-browser/plugins/Survey/target/survey-9.1.6.jar to /home/admin/.m2/repository/org/lorainelab/igb/survey/9.1.6/survey-9.1.6.jar [INFO] Installing /home/admin/integrated-genome-browser/plugins/Survey/pom.xml to /home/admin/.m2/repository/org/lorainelab/igb/survey/9.1.6/survey-9.1.6.pom [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ survey --- [INFO] Installing org/lorainelab/igb/survey/9.1.6/survey-9.1.6.jar [INFO] Writing OBR metadata [INFO] [INFO] --- maven-dependency-plugin:2.9:copy (copy) @ survey --- [INFO] Configured Artifact: org.lorainelab.igb:survey:9.1.6:jar [INFO] Copying survey-9.1.6.jar to /home/admin/integrated-genome-browser/bundles/survey-9.1.6.jar [INFO] [INFO] ------------------< org.lorainelab.igb:thresholding >------------------- [INFO] Building Plugin - Graph thresholding visual analytics 9.1.6 [44/58] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ thresholding --- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ thresholding --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] Copying 2 resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ thresholding --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 8 source files to /home/admin/integrated-genome-browser/plugins/Thresholding/target/classes Note: /home/admin/integrated-genome-browser/plugins/Thresholding/src/main/java/com/affymetrix/igb/thresholding/GraphScoreThreshSetter.java uses unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ thresholding --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ thresholding --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ thresholding --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ thresholding --- [INFO] [INFO] --- maven-install-plugin:3.0.0-M1:install (default-install) @ thresholding --- [INFO] Installing /home/admin/integrated-genome-browser/plugins/Thresholding/target/thresholding-9.1.6.jar to /home/admin/.m2/repository/org/lorainelab/igb/thresholding/9.1.6/thresholding-9.1.6.jar [INFO] Installing /home/admin/integrated-genome-browser/plugins/Thresholding/pom.xml to /home/admin/.m2/repository/org/lorainelab/igb/thresholding/9.1.6/thresholding-9.1.6.pom [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ thresholding --- [INFO] Installing org/lorainelab/igb/thresholding/9.1.6/thresholding-9.1.6.jar [INFO] Writing OBR metadata [INFO] [INFO] --- maven-dependency-plugin:2.9:copy (copy) @ thresholding --- [INFO] Configured Artifact: org.lorainelab.igb:thresholding:9.1.6:jar [INFO] Copying thresholding-9.1.6.jar to /home/admin/integrated-genome-browser/bundles/thresholding-9.1.6.jar [INFO] [INFO] ---------------------< org.lorainelab.igb:update >---------------------- [INFO] Building Plugin - Update 9.1.6 [45/58] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ update --- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ update --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] Copying 2 resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ update --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 5 source files to /home/admin/integrated-genome-browser/plugins/Update/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ update --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ update --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ update --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ update --- [INFO] [INFO] --- maven-install-plugin:3.0.0-M1:install (default-install) @ update --- [INFO] Installing /home/admin/integrated-genome-browser/plugins/Update/target/update-9.1.6.jar to /home/admin/.m2/repository/org/lorainelab/igb/update/9.1.6/update-9.1.6.jar [INFO] Installing /home/admin/integrated-genome-browser/plugins/Update/pom.xml to /home/admin/.m2/repository/org/lorainelab/igb/update/9.1.6/update-9.1.6.pom [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ update --- [INFO] Installing org/lorainelab/igb/update/9.1.6/update-9.1.6.jar [INFO] Writing OBR metadata [INFO] [INFO] --- maven-dependency-plugin:2.9:copy (copy) @ update --- [INFO] Configured Artifact: org.lorainelab.igb:update:9.1.6:jar [INFO] Copying update-9.1.6.jar to /home/admin/integrated-genome-browser/bundles/update-9.1.6.jar [INFO] [INFO] -----------------< org.lorainelab.igb:plugins-manager >----------------- [INFO] Building Plugin - App Manager GUI 9.1.6 [46/58] [INFO] -------------------------------[ bundle ]------------------------------- Downloading from repo1: https://maven.bioviz.org/repo1/org/apache/felix/org.apache.felix.bundlerepository/2.0.10/org.apache.felix.bundlerepository-2.0.10.pom Downloading from repo2: https://maven.bioviz.org/repo2/org/apache/felix/org.apache.felix.bundlerepository/2.0.10/org.apache.felix.bundlerepository-2.0.10.pom Downloading from repo3: https://maven.bioviz.org/repo3/org/apache/felix/org.apache.felix.bundlerepository/2.0.10/org.apache.felix.bundlerepository-2.0.10.pom Downloading from maven-releases: https://nexus.bioviz.org/repository/maven-releases/org/apache/felix/org.apache.felix.bundlerepository/2.0.10/org.apache.felix.bundlerepository-2.0.10.pom Downloading from central: https://repo.maven.apache.org/maven2/org/apache/felix/org.apache.felix.bundlerepository/2.0.10/org.apache.felix.bundlerepository-2.0.10.pom Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/felix/org.apache.felix.bundlerepository/2.0.10/org.apache.felix.bundlerepository-2.0.10.pom (8.0 kB at 723 kB/s) Downloading from repo1: https://maven.bioviz.org/repo1/org/osgi/org.osgi.core/5.0.0/org.osgi.core-5.0.0.pom Downloading from repo2: https://maven.bioviz.org/repo2/org/osgi/org.osgi.core/5.0.0/org.osgi.core-5.0.0.pom Downloading from repo3: https://maven.bioviz.org/repo3/org/osgi/org.osgi.core/5.0.0/org.osgi.core-5.0.0.pom Downloading from maven-releases: https://nexus.bioviz.org/repository/maven-releases/org/osgi/org.osgi.core/5.0.0/org.osgi.core-5.0.0.pom Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.core/5.0.0/org.osgi.core-5.0.0.pom Downloaded from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.core/5.0.0/org.osgi.core-5.0.0.pom (1.4 kB at 128 kB/s) Downloading from repo1: https://maven.bioviz.org/repo1/org/easymock/easymock/3.4/easymock-3.4.pom Downloading from repo2: https://maven.bioviz.org/repo2/org/easymock/easymock/3.4/easymock-3.4.pom Downloading from repo3: https://maven.bioviz.org/repo3/org/easymock/easymock/3.4/easymock-3.4.pom Downloading from maven-releases: https://nexus.bioviz.org/repository/maven-releases/org/easymock/easymock/3.4/easymock-3.4.pom Downloading from central: https://repo.maven.apache.org/maven2/org/easymock/easymock/3.4/easymock-3.4.pom Downloaded from central: https://repo.maven.apache.org/maven2/org/easymock/easymock/3.4/easymock-3.4.pom (7.3 kB at 609 kB/s) Downloading from repo1: https://maven.bioviz.org/repo1/org/easymock/easymock-parent/3.4/easymock-parent-3.4.pom Downloading from repo2: https://maven.bioviz.org/repo2/org/easymock/easymock-parent/3.4/easymock-parent-3.4.pom Downloading from repo3: https://maven.bioviz.org/repo3/org/easymock/easymock-parent/3.4/easymock-parent-3.4.pom Downloading from maven-releases: https://nexus.bioviz.org/repository/maven-releases/org/easymock/easymock-parent/3.4/easymock-parent-3.4.pom Downloading from central: https://repo.maven.apache.org/maven2/org/easymock/easymock-parent/3.4/easymock-parent-3.4.pom Downloaded from central: https://repo.maven.apache.org/maven2/org/easymock/easymock-parent/3.4/easymock-parent-3.4.pom (17 kB at 949 kB/s) Downloading from repo1: https://maven.bioviz.org/repo1/org/objenesis/objenesis/2.2/objenesis-2.2.pom Downloading from repo2: https://maven.bioviz.org/repo2/org/objenesis/objenesis/2.2/objenesis-2.2.pom Downloading from repo3: https://maven.bioviz.org/repo3/org/objenesis/objenesis/2.2/objenesis-2.2.pom Downloading from maven-releases: https://nexus.bioviz.org/repository/maven-releases/org/objenesis/objenesis/2.2/objenesis-2.2.pom Downloading from central: https://repo.maven.apache.org/maven2/org/objenesis/objenesis/2.2/objenesis-2.2.pom Downloaded from central: https://repo.maven.apache.org/maven2/org/objenesis/objenesis/2.2/objenesis-2.2.pom (2.5 kB at 207 kB/s) Downloading from repo1: https://maven.bioviz.org/repo1/org/objenesis/objenesis-parent/2.2/objenesis-parent-2.2.pom Downloading from repo2: https://maven.bioviz.org/repo2/org/objenesis/objenesis-parent/2.2/objenesis-parent-2.2.pom Downloading from repo3: https://maven.bioviz.org/repo3/org/objenesis/objenesis-parent/2.2/objenesis-parent-2.2.pom Downloading from maven-releases: https://nexus.bioviz.org/repository/maven-releases/org/objenesis/objenesis-parent/2.2/objenesis-parent-2.2.pom Downloading from central: https://repo.maven.apache.org/maven2/org/objenesis/objenesis-parent/2.2/objenesis-parent-2.2.pom Downloaded from central: https://repo.maven.apache.org/maven2/org/objenesis/objenesis-parent/2.2/objenesis-parent-2.2.pom (17 kB at 1.8 MB/s) Downloading from repo1: https://maven.bioviz.org/repo1/org/osgi/org.osgi.core/5.0.0/org.osgi.core-5.0.0.jar Downloading from repo1: https://maven.bioviz.org/repo1/org/easymock/easymock/3.4/easymock-3.4.jar Downloading from repo1: https://maven.bioviz.org/repo1/org/objenesis/objenesis/2.2/objenesis-2.2.jar Downloading from repo2: https://maven.bioviz.org/repo2/org/osgi/org.osgi.core/5.0.0/org.osgi.core-5.0.0.jar Downloading from repo2: https://maven.bioviz.org/repo2/org/easymock/easymock/3.4/easymock-3.4.jar Downloading from repo2: https://maven.bioviz.org/repo2/org/objenesis/objenesis/2.2/objenesis-2.2.jar Downloading from repo3: https://maven.bioviz.org/repo3/org/osgi/org.osgi.core/5.0.0/org.osgi.core-5.0.0.jar Downloading from repo3: https://maven.bioviz.org/repo3/org/easymock/easymock/3.4/easymock-3.4.jar Downloading from repo3: https://maven.bioviz.org/repo3/org/objenesis/objenesis/2.2/objenesis-2.2.jar Downloading from maven-releases: https://nexus.bioviz.org/repository/maven-releases/org/osgi/org.osgi.core/5.0.0/org.osgi.core-5.0.0.jar Downloading from maven-releases: https://nexus.bioviz.org/repository/maven-releases/org/easymock/easymock/3.4/easymock-3.4.jar Downloading from maven-releases: https://nexus.bioviz.org/repository/maven-releases/org/objenesis/objenesis/2.2/objenesis-2.2.jar Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.core/5.0.0/org.osgi.core-5.0.0.jar Downloading from central: https://repo.maven.apache.org/maven2/org/easymock/easymock/3.4/easymock-3.4.jar Downloading from central: https://repo.maven.apache.org/maven2/org/objenesis/objenesis/2.2/objenesis-2.2.jar Downloaded from central: https://repo.maven.apache.org/maven2/org/objenesis/objenesis/2.2/objenesis-2.2.jar (53 kB at 1.1 MB/s) Downloaded from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.core/5.0.0/org.osgi.core-5.0.0.jar (430 kB at 3.8 MB/s) Downloaded from central: https://repo.maven.apache.org/maven2/org/easymock/easymock/3.4/easymock-3.4.jar (474 kB at 4.1 MB/s) [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ plugins-manager --- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ plugins-manager --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] Copying 30 resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ plugins-manager --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 24 source files to /home/admin/integrated-genome-browser/plugins/plugin-manager/target/classes Note: /home/admin/integrated-genome-browser/plugins/plugin-manager/src/main/java/org/lorainelab/igb/plugin/manager/AppManagerFxPanel.java uses unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ plugins-manager --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ plugins-manager --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 1 source file to /home/admin/integrated-genome-browser/plugins/plugin-manager/target/test-classes [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ plugins-manager --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ plugins-manager --- [INFO] [INFO] --- maven-install-plugin:3.0.0-M1:install (default-install) @ plugins-manager --- [INFO] Installing /home/admin/integrated-genome-browser/plugins/plugin-manager/target/plugins-manager-9.1.6.jar to /home/admin/.m2/repository/org/lorainelab/igb/plugins-manager/9.1.6/plugins-manager-9.1.6.jar [INFO] Installing /home/admin/integrated-genome-browser/plugins/plugin-manager/pom.xml to /home/admin/.m2/repository/org/lorainelab/igb/plugins-manager/9.1.6/plugins-manager-9.1.6.pom [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ plugins-manager --- [INFO] Installing org/lorainelab/igb/plugins-manager/9.1.6/plugins-manager-9.1.6.jar [INFO] Writing OBR metadata [INFO] [INFO] --- maven-dependency-plugin:2.9:copy (copy) @ plugins-manager --- [INFO] Configured Artifact: org.lorainelab.igb:plugins-manager:9.1.6:jar [INFO] Copying plugins-manager-9.1.6.jar to /home/admin/integrated-genome-browser/bundles/plugins-manager-9.1.6.jar [INFO] [INFO] ------------< org.lorainelab.igb:paired-data-preprocessor >------------- [INFO] Building Plugin - Paired-end Read Preprocessor 9.1.6 [47/58] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ paired-data-preprocessor --- [INFO] Deleting /home/admin/integrated-genome-browser/bundles/dynamic (includes = [paired-data-preprocessor-9.1.6.jar], excludes = []) [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ paired-data-preprocessor --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] skip non existing resourceDirectory /home/admin/integrated-genome-browser/plugins/PairedEndDataPreprocessor/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ paired-data-preprocessor --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 1 source file to /home/admin/integrated-genome-browser/plugins/PairedEndDataPreprocessor/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ paired-data-preprocessor --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/admin/integrated-genome-browser/plugins/PairedEndDataPreprocessor/src/test/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ paired-data-preprocessor --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ paired-data-preprocessor --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ paired-data-preprocessor --- [INFO] [INFO] --- maven-install-plugin:3.0.0-M1:install (default-install) @ paired-data-preprocessor --- [INFO] Installing /home/admin/integrated-genome-browser/plugins/PairedEndDataPreprocessor/target/paired-data-preprocessor-9.1.6.jar to /home/admin/.m2/repository/org/lorainelab/igb/paired-data-preprocessor/9.1.6/paired-data-preprocessor-9.1.6.jar [INFO] Installing /home/admin/integrated-genome-browser/plugins/PairedEndDataPreprocessor/pom.xml to /home/admin/.m2/repository/org/lorainelab/igb/paired-data-preprocessor/9.1.6/paired-data-preprocessor-9.1.6.pom [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ paired-data-preprocessor --- [INFO] Installing org/lorainelab/igb/paired-data-preprocessor/9.1.6/paired-data-preprocessor-9.1.6.jar [INFO] Writing OBR metadata [INFO] [INFO] --- maven-dependency-plugin:2.9:copy (copy) @ paired-data-preprocessor --- [INFO] Configured Artifact: org.lorainelab.igb:paired-data-preprocessor:9.1.6:jar [INFO] Copying paired-data-preprocessor-9.1.6.jar to /home/admin/integrated-genome-browser/bundles/dynamic/paired-data-preprocessor-9.1.6.jar [INFO] [INFO] -----------------< org.lorainelab.igb:session-manager >----------------- [INFO] Building Plugin - Save Session Manager 9.1.6 [48/58] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ session-manager --- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ session-manager --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] Copying 3 resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ session-manager --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 2 source files to /home/admin/integrated-genome-browser/plugins/session-manager/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ session-manager --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/admin/integrated-genome-browser/plugins/session-manager/src/test/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ session-manager --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ session-manager --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ session-manager --- [INFO] [INFO] --- maven-install-plugin:3.0.0-M1:install (default-install) @ session-manager --- [INFO] Installing /home/admin/integrated-genome-browser/plugins/session-manager/target/session-manager-9.1.6.jar to /home/admin/.m2/repository/org/lorainelab/igb/session-manager/9.1.6/session-manager-9.1.6.jar [INFO] Installing /home/admin/integrated-genome-browser/plugins/session-manager/pom.xml to /home/admin/.m2/repository/org/lorainelab/igb/session-manager/9.1.6/session-manager-9.1.6.pom [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ session-manager --- [INFO] Installing org/lorainelab/igb/session-manager/9.1.6/session-manager-9.1.6.jar [INFO] Writing OBR metadata [INFO] [INFO] --- maven-dependency-plugin:2.9:copy (copy) @ session-manager --- [INFO] Configured Artifact: org.lorainelab.igb:session-manager:9.1.6:jar [INFO] Copying session-manager-9.1.6.jar to /home/admin/integrated-genome-browser/bundles/session-manager-9.1.6.jar [INFO] [INFO] ---------------< org.lorainelab.igb:keybinding-registry >--------------- [INFO] Building Plugin - Toolbar Preferences GUI 9.1.6 [49/58] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ keybinding-registry --- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ keybinding-registry --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] Copying 2 resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ keybinding-registry --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 3 source files to /home/admin/integrated-genome-browser/plugins/Keybinding-registry/target/classes Note: /home/admin/integrated-genome-browser/plugins/Keybinding-registry/src/main/java/org/lorainelab/igb/keystrokes/model/KeyStrokeViewTableModel.java uses unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ keybinding-registry --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/admin/integrated-genome-browser/plugins/Keybinding-registry/src/test/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ keybinding-registry --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ keybinding-registry --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ keybinding-registry --- [INFO] [INFO] --- maven-install-plugin:3.0.0-M1:install (default-install) @ keybinding-registry --- [INFO] Installing /home/admin/integrated-genome-browser/plugins/Keybinding-registry/target/keybinding-registry-9.1.6.jar to /home/admin/.m2/repository/org/lorainelab/igb/keybinding-registry/9.1.6/keybinding-registry-9.1.6.jar [INFO] Installing /home/admin/integrated-genome-browser/plugins/Keybinding-registry/pom.xml to /home/admin/.m2/repository/org/lorainelab/igb/keybinding-registry/9.1.6/keybinding-registry-9.1.6.pom [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ keybinding-registry --- [INFO] Installing org/lorainelab/igb/keybinding-registry/9.1.6/keybinding-registry-9.1.6.jar [INFO] Writing OBR metadata [INFO] [INFO] --- maven-dependency-plugin:2.9:copy (copy) @ keybinding-registry --- [INFO] Configured Artifact: org.lorainelab.igb:keybinding-registry:9.1.6:jar [INFO] Copying keybinding-registry-9.1.6.jar to /home/admin/integrated-genome-browser/bundles/keybinding-registry-9.1.6.jar [INFO] [INFO] ----< org.lorainelab.igb:org.lorainelab.igb.error.reporter.manager >---- [INFO] Building Plugin - Error reporting 9.1.6 [50/58] [INFO] -------------------------------[ bundle ]------------------------------- Downloading from repo1: https://maven.bioviz.org/repo1/org/lorainelab/igb/org.lorainelab.igb.error.reporter.api/1.0.0/org.lorainelab.igb.error.reporter.api-1.0.0.pom Downloading from repo2: https://maven.bioviz.org/repo2/org/lorainelab/igb/org.lorainelab.igb.error.reporter.api/1.0.0/org.lorainelab.igb.error.reporter.api-1.0.0.pom Downloaded from repo2: https://maven.bioviz.org/repo2/org/lorainelab/igb/org.lorainelab.igb.error.reporter.api/1.0.0/org.lorainelab.igb.error.reporter.api-1.0.0.pom (1.5 kB at 47 kB/s) Downloading from repo1: https://maven.bioviz.org/repo1/org/lorainelab/igb/org.lorainelab.igb.error.reporter.parent/1.0.0/org.lorainelab.igb.error.reporter.parent-1.0.0.pom Downloading from repo2: https://maven.bioviz.org/repo2/org/lorainelab/igb/org.lorainelab.igb.error.reporter.parent/1.0.0/org.lorainelab.igb.error.reporter.parent-1.0.0.pom Downloaded from repo2: https://maven.bioviz.org/repo2/org/lorainelab/igb/org.lorainelab.igb.error.reporter.parent/1.0.0/org.lorainelab.igb.error.reporter.parent-1.0.0.pom (3.6 kB at 99 kB/s) Downloading from repo1: https://maven.bioviz.org/repo1/org/osgi/org.osgi.service.remoteserviceadmin/1.1.0/org.osgi.service.remoteserviceadmin-1.1.0.pom Downloading from repo2: https://maven.bioviz.org/repo2/org/osgi/org.osgi.service.remoteserviceadmin/1.1.0/org.osgi.service.remoteserviceadmin-1.1.0.pom Downloading from repo3: https://maven.bioviz.org/repo3/org/osgi/org.osgi.service.remoteserviceadmin/1.1.0/org.osgi.service.remoteserviceadmin-1.1.0.pom Downloading from maven-releases: https://nexus.bioviz.org/repository/maven-releases/org/osgi/org.osgi.service.remoteserviceadmin/1.1.0/org.osgi.service.remoteserviceadmin-1.1.0.pom Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.service.remoteserviceadmin/1.1.0/org.osgi.service.remoteserviceadmin-1.1.0.pom Downloaded from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.service.remoteserviceadmin/1.1.0/org.osgi.service.remoteserviceadmin-1.1.0.pom (1.3 kB at 111 kB/s) [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ org.lorainelab.igb.error.reporter.manager --- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ org.lorainelab.igb.error.reporter.manager --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] skip non existing resourceDirectory /home/admin/integrated-genome-browser/plugins/org.lorainelab.igb.error.reporter.manager/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ org.lorainelab.igb.error.reporter.manager --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 2 source files to /home/admin/integrated-genome-browser/plugins/org.lorainelab.igb.error.reporter.manager/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ org.lorainelab.igb.error.reporter.manager --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/admin/integrated-genome-browser/plugins/org.lorainelab.igb.error.reporter.manager/src/test/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ org.lorainelab.igb.error.reporter.manager --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ org.lorainelab.igb.error.reporter.manager --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ org.lorainelab.igb.error.reporter.manager --- [INFO] [INFO] --- maven-install-plugin:3.0.0-M1:install (default-install) @ org.lorainelab.igb.error.reporter.manager --- [INFO] Installing /home/admin/integrated-genome-browser/plugins/org.lorainelab.igb.error.reporter.manager/target/org.lorainelab.igb.error.reporter.manager-9.1.6.jar to /home/admin/.m2/repository/org/lorainelab/igb/org.lorainelab.igb.error.reporter.manager/9.1.6/org.lorainelab.igb.error.reporter.manager-9.1.6.jar [INFO] Installing /home/admin/integrated-genome-browser/plugins/org.lorainelab.igb.error.reporter.manager/pom.xml to /home/admin/.m2/repository/org/lorainelab/igb/org.lorainelab.igb.error.reporter.manager/9.1.6/org.lorainelab.igb.error.reporter.manager-9.1.6.pom [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ org.lorainelab.igb.error.reporter.manager --- [INFO] Installing org/lorainelab/igb/org.lorainelab.igb.error.reporter.manager/9.1.6/org.lorainelab.igb.error.reporter.manager-9.1.6.jar [INFO] Writing OBR metadata [INFO] [INFO] --- maven-dependency-plugin:2.9:copy (copy) @ org.lorainelab.igb.error.reporter.manager --- [INFO] Configured Artifact: org.lorainelab.igb:org.lorainelab.igb.error.reporter.manager:9.1.6:jar [INFO] Copying org.lorainelab.igb.error.reporter.manager-9.1.6.jar to /home/admin/integrated-genome-browser/bundles/org.lorainelab.igb.error.reporter.manager-9.1.6.jar [INFO] [INFO] --------------------< org.lorainelab.igb:feedback >--------------------- [INFO] Building Plugin - Feedback 9.1.6 [51/58] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ feedback --- [INFO] Deleting /home/admin/integrated-genome-browser/bundles/dynamic (includes = [feedback-9.1.6.jar], excludes = []) [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ feedback --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] Copying 5 resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ feedback --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 2 source files to /home/admin/integrated-genome-browser/plugins/feedback/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ feedback --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/admin/integrated-genome-browser/plugins/feedback/src/test/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ feedback --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ feedback --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ feedback --- [INFO] [INFO] --- maven-install-plugin:3.0.0-M1:install (default-install) @ feedback --- [INFO] Installing /home/admin/integrated-genome-browser/plugins/feedback/target/feedback-9.1.6.jar to /home/admin/.m2/repository/org/lorainelab/igb/feedback/9.1.6/feedback-9.1.6.jar [INFO] Installing /home/admin/integrated-genome-browser/plugins/feedback/pom.xml to /home/admin/.m2/repository/org/lorainelab/igb/feedback/9.1.6/feedback-9.1.6.pom [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ feedback --- [INFO] Installing org/lorainelab/igb/feedback/9.1.6/feedback-9.1.6.jar [INFO] Writing OBR metadata [INFO] [INFO] --- maven-dependency-plugin:2.9:copy (copy) @ feedback --- [INFO] Configured Artifact: org.lorainelab.igb:feedback:9.1.6:jar [INFO] Copying feedback-9.1.6.jar to /home/admin/integrated-genome-browser/bundles/dynamic/feedback-9.1.6.jar [INFO] [INFO] -------------------< org.lorainelab.igb:narrowpeak >-------------------- [INFO] Building Plugin - Narrowpeak data format handler 9.1.6 [52/58] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ narrowpeak --- [INFO] Deleting /home/admin/integrated-genome-browser/bundles/dynamic (includes = [narrowpeak-9.1.6.jar], excludes = []) [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ narrowpeak --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] skip non existing resourceDirectory /home/admin/integrated-genome-browser/plugins/narrowpeak/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ narrowpeak --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 2 source files to /home/admin/integrated-genome-browser/plugins/narrowpeak/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ narrowpeak --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ narrowpeak --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ narrowpeak --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ narrowpeak --- [INFO] [INFO] --- maven-install-plugin:3.0.0-M1:install (default-install) @ narrowpeak --- [INFO] Installing /home/admin/integrated-genome-browser/plugins/narrowpeak/target/narrowpeak-9.1.6.jar to /home/admin/.m2/repository/org/lorainelab/igb/narrowpeak/9.1.6/narrowpeak-9.1.6.jar [INFO] Installing /home/admin/integrated-genome-browser/plugins/narrowpeak/pom.xml to /home/admin/.m2/repository/org/lorainelab/igb/narrowpeak/9.1.6/narrowpeak-9.1.6.pom [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ narrowpeak --- [INFO] Installing org/lorainelab/igb/narrowpeak/9.1.6/narrowpeak-9.1.6.jar [INFO] Writing OBR metadata [INFO] [INFO] --- maven-dependency-plugin:2.9:copy (copy) @ narrowpeak --- [INFO] Configured Artifact: org.lorainelab.igb:narrowpeak:9.1.6:jar [INFO] Copying narrowpeak-9.1.6.jar to /home/admin/integrated-genome-browser/bundles/dynamic/narrowpeak-9.1.6.jar [INFO] [INFO] -------------------< org.lorainelab.igb:genotyping >-------------------- [INFO] Building Plugin - File Handler - Genotyping Results 9.1.6 [53/58] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ genotyping --- [INFO] Deleting /home/admin/integrated-genome-browser/bundles/dynamic (includes = [genotyping-9.1.6.jar], excludes = []) [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ genotyping --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] skip non existing resourceDirectory /home/admin/integrated-genome-browser/plugins/GenotypingResults/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ genotyping --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 5 source files to /home/admin/integrated-genome-browser/plugins/GenotypingResults/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ genotyping --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 2 resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ genotyping --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 1 source file to /home/admin/integrated-genome-browser/plugins/GenotypingResults/target/test-classes [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ genotyping --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ genotyping --- [INFO] [INFO] --- maven-install-plugin:3.0.0-M1:install (default-install) @ genotyping --- [INFO] Installing /home/admin/integrated-genome-browser/plugins/GenotypingResults/target/genotyping-9.1.6.jar to /home/admin/.m2/repository/org/lorainelab/igb/genotyping/9.1.6/genotyping-9.1.6.jar [INFO] Installing /home/admin/integrated-genome-browser/plugins/GenotypingResults/pom.xml to /home/admin/.m2/repository/org/lorainelab/igb/genotyping/9.1.6/genotyping-9.1.6.pom [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ genotyping --- [INFO] Installing org/lorainelab/igb/genotyping/9.1.6/genotyping-9.1.6.jar [INFO] Writing OBR metadata [INFO] [INFO] --- maven-dependency-plugin:2.9:copy (copy) @ genotyping --- [INFO] Configured Artifact: org.lorainelab.igb:genotyping:9.1.6:jar [INFO] Copying genotyping-9.1.6.jar to /home/admin/integrated-genome-browser/bundles/dynamic/genotyping-9.1.6.jar [INFO] [INFO] -----------------------< org.lorainelab.igb:bed >----------------------- [INFO] Building Plugin - BED file format handler 9.1.6 [54/58] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ bed --- [INFO] Deleting /home/admin/integrated-genome-browser/bundles/dynamic (includes = [bed-9.1.6.jar], excludes = []) [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ bed --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] skip non existing resourceDirectory /home/admin/integrated-genome-browser/plugins/bed/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ bed --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 2 source files to /home/admin/integrated-genome-browser/plugins/bed/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ bed --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 4 resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ bed --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 1 source file to /home/admin/integrated-genome-browser/plugins/bed/target/test-classes [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ bed --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ bed --- [INFO] [INFO] --- maven-install-plugin:3.0.0-M1:install (default-install) @ bed --- [INFO] Installing /home/admin/integrated-genome-browser/plugins/bed/target/bed-9.1.6.jar to /home/admin/.m2/repository/org/lorainelab/igb/bed/9.1.6/bed-9.1.6.jar [INFO] Installing /home/admin/integrated-genome-browser/plugins/bed/pom.xml to /home/admin/.m2/repository/org/lorainelab/igb/bed/9.1.6/bed-9.1.6.pom [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ bed --- [INFO] Installing org/lorainelab/igb/bed/9.1.6/bed-9.1.6.jar [INFO] Writing OBR metadata [INFO] [INFO] --- maven-dependency-plugin:2.9:copy (copy) @ bed --- [INFO] Configured Artifact: org.lorainelab.igb:bed:9.1.6:jar [INFO] Copying bed-9.1.6.jar to /home/admin/integrated-genome-browser/bundles/dynamic/bed-9.1.6.jar [INFO] [INFO] -----------------------< org.lorainelab.igb:bam >----------------------- [INFO] Building Plugin - BAM data format handler 9.1.6 [55/58] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ bam --- [INFO] Deleting /home/admin/integrated-genome-browser/bundles/dynamic (includes = [bam-9.1.6.jar], excludes = []) [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ bam --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] skip non existing resourceDirectory /home/admin/integrated-genome-browser/plugins/bam/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ bam --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 5 source files to /home/admin/integrated-genome-browser/plugins/bam/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ bam --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 3 resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ bam --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 2 source files to /home/admin/integrated-genome-browser/plugins/bam/target/test-classes [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ bam --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ bam --- [INFO] [INFO] --- maven-install-plugin:3.0.0-M1:install (default-install) @ bam --- [INFO] Installing /home/admin/integrated-genome-browser/plugins/bam/target/bam-9.1.6.jar to /home/admin/.m2/repository/org/lorainelab/igb/bam/9.1.6/bam-9.1.6.jar [INFO] Installing /home/admin/integrated-genome-browser/plugins/bam/pom.xml to /home/admin/.m2/repository/org/lorainelab/igb/bam/9.1.6/bam-9.1.6.pom [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ bam --- [INFO] Installing org/lorainelab/igb/bam/9.1.6/bam-9.1.6.jar [INFO] Writing OBR metadata [INFO] [INFO] --- maven-dependency-plugin:2.9:copy (copy) @ bam --- [INFO] Configured Artifact: org.lorainelab.igb:bam:9.1.6:jar [INFO] Copying bam-9.1.6.jar to /home/admin/integrated-genome-browser/bundles/dynamic/bam-9.1.6.jar [INFO] [INFO] -----------------------< org.lorainelab.igb:bai >----------------------- [INFO] Building Plugin - BAI index visualization handler 9.1.6 [56/58] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ bai --- [INFO] Deleting /home/admin/integrated-genome-browser/bundles/dynamic (includes = [bai-9.1.6.jar], excludes = []) [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ bai --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] Copying 1 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ bai --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 3 source files to /home/admin/integrated-genome-browser/plugins/bai/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ bai --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/admin/integrated-genome-browser/plugins/bai/src/test/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ bai --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ bai --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ bai --- [INFO] [INFO] --- maven-install-plugin:3.0.0-M1:install (default-install) @ bai --- [INFO] Installing /home/admin/integrated-genome-browser/plugins/bai/target/bai-9.1.6.jar to /home/admin/.m2/repository/org/lorainelab/igb/bai/9.1.6/bai-9.1.6.jar [INFO] Installing /home/admin/integrated-genome-browser/plugins/bai/pom.xml to /home/admin/.m2/repository/org/lorainelab/igb/bai/9.1.6/bai-9.1.6.pom [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ bai --- [INFO] Installing org/lorainelab/igb/bai/9.1.6/bai-9.1.6.jar [INFO] Writing OBR metadata [INFO] [INFO] --- maven-dependency-plugin:2.9:copy (copy) @ bai --- [INFO] Configured Artifact: org.lorainelab.igb:bai:9.1.6:jar [INFO] Copying bai-9.1.6.jar to /home/admin/integrated-genome-browser/bundles/dynamic/bai-9.1.6.jar [INFO] [INFO] --------------------< org.lorainelab.igb:appstore >--------------------- [INFO] Building Plugin - App Store REST API 9.1.6 [57/58] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ appstore --- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ appstore --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] skip non existing resourceDirectory /home/admin/integrated-genome-browser/plugins/AppStore/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ appstore --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 2 source files to /home/admin/integrated-genome-browser/plugins/AppStore/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ appstore --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/admin/integrated-genome-browser/plugins/AppStore/src/test/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ appstore --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ appstore --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ appstore --- [INFO] [INFO] --- maven-install-plugin:3.0.0-M1:install (default-install) @ appstore --- [INFO] Installing /home/admin/integrated-genome-browser/plugins/AppStore/target/appstore-9.1.6.jar to /home/admin/.m2/repository/org/lorainelab/igb/appstore/9.1.6/appstore-9.1.6.jar [INFO] Installing /home/admin/integrated-genome-browser/plugins/AppStore/pom.xml to /home/admin/.m2/repository/org/lorainelab/igb/appstore/9.1.6/appstore-9.1.6.pom [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ appstore --- [INFO] Installing org/lorainelab/igb/appstore/9.1.6/appstore-9.1.6.jar [INFO] Writing OBR metadata [INFO] [INFO] --- maven-dependency-plugin:2.9:copy (copy) @ appstore --- [INFO] Configured Artifact: org.lorainelab.igb:appstore:9.1.6:jar [INFO] Copying appstore-9.1.6.jar to /home/admin/integrated-genome-browser/bundles/appstore-9.1.6.jar [INFO] [INFO] ----------------------< org.lorainelab.igb:main >----------------------- [INFO] Building IGB Main (run me) 9.1.6 [58/58] [INFO] --------------------------------[ jar ]--------------------------------- Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/plugins/maven-resources-plugin/2.6/maven-resources-plugin-2.6.pom Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/plugins/maven-resources-plugin/2.6/maven-resources-plugin-2.6.pom (8.1 kB at 580 kB/s) Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/plugins/maven-resources-plugin/2.6/maven-resources-plugin-2.6.jar Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/plugins/maven-resources-plugin/2.6/maven-resources-plugin-2.6.jar (30 kB at 1.6 MB/s) Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/plugins/maven-jar-plugin/2.5/maven-jar-plugin-2.5.pom Downloaded from central: 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central: https://repo.maven.apache.org/maven2/org/eclipse/jetty/websocket/websocket-client/9.4.19.v20190610/websocket-client-9.4.19.v20190610.jar Downloaded from central: https://repo.maven.apache.org/maven2/org/eclipse/jetty/websocket/websocket-server/9.4.19.v20190610/websocket-server-9.4.19.v20190610.jar (44 kB at 173 kB/s) Downloading from central: https://repo.maven.apache.org/maven2/org/apache/felix/org.apache.felix.http.base/4.0.6/org.apache.felix.http.base-4.0.6.jar Downloaded from central: https://repo.maven.apache.org/maven2/org/eclipse/jetty/websocket/websocket-client/9.4.19.v20190610/websocket-client-9.4.19.v20190610.jar (45 kB at 157 kB/s) Downloading from central: https://repo.maven.apache.org/maven2/org/apache/felix/org.apache.felix.http.bridge/2.3.2/org.apache.felix.http.bridge-2.3.2.jar Downloaded from central: https://repo.maven.apache.org/maven2/org/eclipse/jetty/jetty-server/9.4.19.v20190610/jetty-server-9.4.19.v20190610.jar (649 kB at 2.0 MB/s) Downloading from central: https://repo.maven.apache.org/maven2/org/apache/felix/org.apache.felix.http.api/2.3.2/org.apache.felix.http.api-2.3.2.jar Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/felix/org.apache.felix.http.bridge/2.3.2/org.apache.felix.http.bridge-2.3.2.jar (80 kB at 244 kB/s) Downloading from central: https://repo.maven.apache.org/maven2/org/apache/felix/org.apache.felix.http.cometd/2.3.2/org.apache.felix.http.cometd-2.3.2.jar Downloaded from central: https://repo.maven.apache.org/maven2/org/eclipse/jetty/websocket/websocket-common/9.4.19.v20190610/websocket-common-9.4.19.v20190610.jar (200 kB at 598 kB/s) Downloaded from central: https://repo.maven.apache.org/maven2/org/eclipse/jetty/jetty-util/9.4.19.v20190610/jetty-util-9.4.19.v20190610.jar (527 kB at 1.6 MB/s) Downloading from central: https://repo.maven.apache.org/maven2/org/cometd/java/cometd-java-server/2.8.0/cometd-java-server-2.8.0.jar Downloading from central: https://repo.maven.apache.org/maven2/org/cometd/java/cometd-java-client/2.8.0/cometd-java-client-2.8.0.jar Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/felix/org.apache.felix.http.api/2.3.2/org.apache.felix.http.api-2.3.2.jar (11 kB at 32 kB/s) Downloading from central: https://repo.maven.apache.org/maven2/org/cometd/java/cometd-java-common/2.8.0/cometd-java-common-2.8.0.jar Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/felix/org.apache.felix.http.base/4.0.6/org.apache.felix.http.base-4.0.6.jar (242 kB at 638 kB/s) Downloaded from central: https://repo.maven.apache.org/maven2/org/cometd/java/cometd-java-common/2.8.0/cometd-java-common-2.8.0.jar (28 kB at 75 kB/s) Downloaded from central: https://repo.maven.apache.org/maven2/org/cometd/java/cometd-java-client/2.8.0/cometd-java-client-2.8.0.jar (67 kB at 174 kB/s) Downloading from central: 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(21 kB at 51 kB/s) Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/felix/org.apache.felix.http.whiteboard/2.3.2/org.apache.felix.http.whiteboard-2.3.2.jar (40 kB at 94 kB/s) Downloaded from central: https://repo.maven.apache.org/maven2/org/eclipse/jetty/jetty-client/8.1.14.v20131031/jetty-client-8.1.14.v20131031.jar (88 kB at 206 kB/s) Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/felix/org.apache.felix.http.cometd/2.3.2/org.apache.felix.http.cometd-2.3.2.jar (531 kB at 1.1 MB/s) [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ main --- [INFO] Deleting /home/admin/integrated-genome-browser (includes = [igb_exe.jar], excludes = []) [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ main --- Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/shared/maven-filtering/1.1/maven-filtering-1.1.pom Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/shared/maven-filtering/1.1/maven-filtering-1.1.pom (5.8 kB at 445 kB/s) Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-interpolation/1.12/plexus-interpolation-1.12.pom Downloaded from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-interpolation/1.12/plexus-interpolation-1.12.pom (889 B at 74 kB/s) Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/plexus/plexus-build-api/0.0.4/plexus-build-api-0.0.4.pom Downloaded from central: https://repo.maven.apache.org/maven2/org/sonatype/plexus/plexus-build-api/0.0.4/plexus-build-api-0.0.4.pom (2.9 kB at 318 kB/s) Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/spice/spice-parent/10/spice-parent-10.pom Downloaded from central: https://repo.maven.apache.org/maven2/org/sonatype/spice/spice-parent/10/spice-parent-10.pom (3.0 kB at 502 kB/s) Downloading from central: 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https://repo.maven.apache.org/maven2/org/apache/maven/maven-plugin-descriptor/2.0.6/maven-plugin-descriptor-2.0.6.jar Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-plugin-parameter-documenter/2.0.6/maven-plugin-parameter-documenter-2.0.6.jar (21 kB at 519 kB/s) Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-monitor/2.0.6/maven-monitor-2.0.6.jar Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-utils/2.0.5/plexus-utils-2.0.5.jar Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-monitor/2.0.6/maven-monitor-2.0.6.jar (10 kB at 320 kB/s) Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/shared/maven-filtering/1.1/maven-filtering-1.1.jar Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-error-diagnostics/2.0.6/maven-error-diagnostics-2.0.6.jar (14 kB at 290 kB/s) Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/plexus/plexus-build-api/0.0.4/plexus-build-api-0.0.4.jar Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-plugin-descriptor/2.0.6/maven-plugin-descriptor-2.0.6.jar (37 kB at 683 kB/s) Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-core/2.0.6/maven-core-2.0.6.jar (152 kB at 1.8 MB/s) Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-interpolation/1.13/plexus-interpolation-1.13.jar Downloaded from central: https://repo.maven.apache.org/maven2/org/sonatype/plexus/plexus-build-api/0.0.4/plexus-build-api-0.0.4.jar (6.8 kB at 108 kB/s) Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/shared/maven-filtering/1.1/maven-filtering-1.1.jar (43 kB at 590 kB/s) Downloaded from central: 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[INFO] Copying 0 resource [INFO] Copying 2 resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ main --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 2 source files to /home/admin/integrated-genome-browser/main/target/classes [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ main --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/admin/integrated-genome-browser/main/src/test/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ main --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ main --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:2.5:jar (default-jar) @ main --- Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-io/2.0.10/plexus-io-2.0.10.jar Downloaded from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-io/2.0.10/plexus-io-2.0.10.jar (59 kB at 2.8 MB/s) [INFO] Building jar: /home/admin/integrated-genome-browser/main/target/main-9.1.6.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ main --- [INFO] Installing /home/admin/integrated-genome-browser/main/target/main-9.1.6.jar to /home/admin/.m2/repository/org/lorainelab/igb/main/9.1.6/main-9.1.6.jar [INFO] Installing /home/admin/integrated-genome-browser/main/pom.xml to /home/admin/.m2/repository/org/lorainelab/igb/main/9.1.6/main-9.1.6.pom [INFO] [INFO] --- maven-dependency-plugin:2.9:copy-dependencies (copy) @ main --- [INFO] Copying frameManager-9.1.6.jar to /home/admin/integrated-genome-browser/main/target/lib/frameManager-9.1.6.jar [INFO] Copying commons-lang3-3.4.jar to /home/admin/integrated-genome-browser/main/target/lib/commons-lang3-3.4.jar [INFO] Copying paired-data-preprocessor-9.1.6.jar to /home/admin/integrated-genome-browser/main/target/lib/paired-data-preprocessor-9.1.6.jar [INFO] Copying igb-preferences-9.1.6.jar to /home/admin/integrated-genome-browser/main/target/lib/igb-preferences-9.1.6.jar [INFO] Copying das2-9.1.6.jar to /home/admin/integrated-genome-browser/main/target/lib/das2-9.1.6.jar [INFO] Copying restrictionSites-9.1.6.jar to /home/admin/integrated-genome-browser/main/target/lib/restrictionSites-9.1.6.jar [INFO] Copying org.apache.felix.webconsole-4.3.12.jar to /home/admin/integrated-genome-browser/main/target/lib/org.apache.felix.webconsole-4.3.12.jar [INFO] Copying narrowpeak-9.1.6.jar to /home/admin/integrated-genome-browser/main/target/lib/narrowpeak-9.1.6.jar [INFO] Copying genometry-9.1.6.jar to /home/admin/integrated-genome-browser/main/target/lib/genometry-9.1.6.jar [INFO] Copying annotation-tab-9.1.6.jar to /home/admin/integrated-genome-browser/main/target/lib/annotation-tab-9.1.6.jar [INFO] Copying sequenceViewer-9.1.6.jar to /home/admin/integrated-genome-browser/main/target/lib/sequenceViewer-9.1.6.jar [INFO] Copying org.apache.felix.eventadmin-1.5.0.jar to /home/admin/integrated-genome-browser/main/target/lib/org.apache.felix.eventadmin-1.5.0.jar [INFO] Copying bigWigHandler-9.1.6.jar to /home/admin/integrated-genome-browser/main/target/lib/bigWigHandler-9.1.6.jar [INFO] Copying weblinks-9.1.6.jar to /home/admin/integrated-genome-browser/main/target/lib/weblinks-9.1.6.jar [INFO] Copying org.lorainelab.igb.error.reporter.manager-9.1.6.jar to /home/admin/integrated-genome-browser/main/target/lib/org.lorainelab.igb.error.reporter.manager-9.1.6.jar [INFO] Copying org.apache.felix.http.jetty-4.0.10.jar to /home/admin/integrated-genome-browser/main/target/lib/org.apache.felix.http.jetty-4.0.10.jar [INFO] Copying graphTab-9.1.6.jar to /home/admin/integrated-genome-browser/main/target/lib/graphTab-9.1.6.jar [INFO] Copying commons-jexl-2.1.1.jar to /home/admin/integrated-genome-browser/main/target/lib/commons-jexl-2.1.1.jar [INFO] Copying org.apache.felix.dependencymanager-3.2.0.jar to /home/admin/integrated-genome-browser/main/target/lib/org.apache.felix.dependencymanager-3.2.0.jar [INFO] Copying xz-1.5.jar to /home/admin/integrated-genome-browser/main/target/lib/xz-1.5.jar [INFO] Copying searchModelIdOrProps-9.1.6.jar to /home/admin/integrated-genome-browser/main/target/lib/searchModelIdOrProps-9.1.6.jar [INFO] Copying appstore-9.1.6.jar to /home/admin/integrated-genome-browser/main/target/lib/appstore-9.1.6.jar [INFO] Copying gson-2.3.1.jar to /home/admin/integrated-genome-browser/main/target/lib/gson-2.3.1.jar [INFO] Copying keyWordSearch-9.1.6.jar to /home/admin/integrated-genome-browser/main/target/lib/keyWordSearch-9.1.6.jar [INFO] Copying logback-core-1.1.2.jar to /home/admin/integrated-genome-browser/main/target/lib/logback-core-1.1.2.jar [INFO] Copying logging-config-9.1.6.jar to /home/admin/integrated-genome-browser/main/target/lib/logging-config-9.1.6.jar [INFO] Copying cache-api-9.1.6.jar to /home/admin/integrated-genome-browser/main/target/lib/cache-api-9.1.6.jar [INFO] Copying igbSwingExt-9.1.6.jar to /home/admin/integrated-genome-browser/main/target/lib/igbSwingExt-9.1.6.jar [INFO] Copying commons-io-2.4.jar to /home/admin/integrated-genome-browser/main/target/lib/commons-io-2.4.jar [INFO] Copying genoviz-1.1.9.jar to /home/admin/integrated-genome-browser/main/target/lib/genoviz-1.1.9.jar [INFO] Copying external-sort-9.1.6.jar to /home/admin/integrated-genome-browser/main/target/lib/external-sort-9.1.6.jar [INFO] Copying org.osgi.service.remoteserviceadmin-1.1.0.jar to /home/admin/integrated-genome-browser/main/target/lib/org.osgi.service.remoteserviceadmin-1.1.0.jar [INFO] Copying commons-csv-1.2.jar to /home/admin/integrated-genome-browser/main/target/lib/commons-csv-1.2.jar [INFO] Copying window-service-9.1.6.jar to /home/admin/integrated-genome-browser/main/target/lib/window-service-9.1.6.jar [INFO] Copying org.lorainelab.igb.remote.services.topology.manager-1.0.0.jar to /home/admin/integrated-genome-browser/main/target/lib/org.lorainelab.igb.remote.services.topology.manager-1.0.0.jar [INFO] Copying commons-logging-1.2.jar to /home/admin/integrated-genome-browser/main/target/lib/commons-logging-1.2.jar [INFO] Copying igbScript-9.1.6.jar to /home/admin/integrated-genome-browser/main/target/lib/igbScript-9.1.6.jar [INFO] Copying guava-16.0.1.jar to /home/admin/integrated-genome-browser/main/target/lib/guava-16.0.1.jar [INFO] Copying bigwig-2.0.0.jar to /home/admin/integrated-genome-browser/main/target/lib/bigwig-2.0.0.jar [INFO] Copying track-operations-panel-9.1.6.jar to /home/admin/integrated-genome-browser/main/target/lib/track-operations-panel-9.1.6.jar [INFO] Copying jide-ultimate-3.5.15.jar to /home/admin/integrated-genome-browser/main/target/lib/jide-ultimate-3.5.15.jar [INFO] Copying logback-classic-1.1.2.jar to /home/admin/integrated-genome-browser/main/target/lib/logback-classic-1.1.2.jar [INFO] Copying keybinding-registry-9.1.6.jar to /home/admin/integrated-genome-browser/main/target/lib/keybinding-registry-9.1.6.jar [INFO] Copying commons-codec-1.6.jar to /home/admin/integrated-genome-browser/main/target/lib/commons-codec-1.6.jar [INFO] Copying cache-9.1.6.jar to /home/admin/integrated-genome-browser/main/target/lib/cache-9.1.6.jar [INFO] Copying org.lorainelab.igb.remote.services.distribution.provider.http-1.0.0.jar to /home/admin/integrated-genome-browser/main/target/lib/org.lorainelab.igb.remote.services.distribution.provider.http-1.0.0.jar [INFO] Copying shared-lib-wrapper-9.1.6.jar to /home/admin/integrated-genome-browser/main/target/lib/shared-lib-wrapper-9.1.6.jar [INFO] Copying das-9.1.6.jar to /home/admin/integrated-genome-browser/main/target/lib/das-9.1.6.jar [INFO] Copying jackson-annotations-2.3.5.jar to /home/admin/integrated-genome-browser/main/target/lib/jackson-annotations-2.3.5.jar [INFO] Copying affymetrix-common-9.1.6.jar to /home/admin/integrated-genome-browser/main/target/lib/affymetrix-common-9.1.6.jar [INFO] Copying heatmap-editor-9.1.6.jar to /home/admin/integrated-genome-browser/main/target/lib/heatmap-editor-9.1.6.jar [INFO] Copying igb-services-9.1.6.jar to /home/admin/integrated-genome-browser/main/target/lib/igb-services-9.1.6.jar [INFO] Copying plugins-manager-9.1.6.jar to /home/admin/integrated-genome-browser/main/target/lib/plugins-manager-9.1.6.jar [INFO] Copying image-exporter-9.1.6.jar to /home/admin/integrated-genome-browser/main/target/lib/image-exporter-9.1.6.jar [INFO] Copying context-menu-service-9.1.6.jar to /home/admin/integrated-genome-browser/main/target/lib/context-menu-service-9.1.6.jar [INFO] Copying commons-pool-1.6.jar to /home/admin/integrated-genome-browser/main/target/lib/commons-pool-1.6.jar [INFO] Copying bookmark-9.1.6.jar to /home/admin/integrated-genome-browser/main/target/lib/bookmark-9.1.6.jar [INFO] Copying genotyping-9.1.6.jar to /home/admin/integrated-genome-browser/main/target/lib/genotyping-9.1.6.jar [INFO] Copying org.lorainelab.igb.remote.services.discovery.provider.configured-1.0.0.jar to /home/admin/integrated-genome-browser/main/target/lib/org.lorainelab.igb.remote.services.discovery.provider.configured-1.0.0.jar [INFO] Copying quickload-9.1.6.jar to /home/admin/integrated-genome-browser/main/target/lib/quickload-9.1.6.jar [INFO] Copying commons-fileupload-1.4.jar to /home/admin/integrated-genome-browser/main/target/lib/commons-fileupload-1.4.jar [INFO] Copying bigBedHandler-9.1.6.jar to /home/admin/integrated-genome-browser/main/target/lib/bigBedHandler-9.1.6.jar [INFO] Copying bai-9.1.6.jar to /home/admin/integrated-genome-browser/main/target/lib/bai-9.1.6.jar [INFO] Copying jackson-databind-2.3.5.jar to /home/admin/integrated-genome-browser/main/target/lib/jackson-databind-2.3.5.jar [INFO] Copying session-manager-9.1.6.jar to /home/admin/integrated-genome-browser/main/target/lib/session-manager-9.1.6.jar [INFO] Copying bam-9.1.6.jar to /home/admin/integrated-genome-browser/main/target/lib/bam-9.1.6.jar [INFO] Copying htsjdk-igb-2.16.3.jar to /home/admin/integrated-genome-browser/main/target/lib/htsjdk-igb-2.16.3.jar [INFO] Copying org.lorainelab.igb.remote.services.commons-1.0.0.jar to /home/admin/integrated-genome-browser/main/target/lib/org.lorainelab.igb.remote.services.commons-1.0.0.jar [INFO] Copying org.apache.felix.main-5.2.0.jar to /home/admin/integrated-genome-browser/main/target/lib/org.apache.felix.main-5.2.0.jar [INFO] Copying jackson-core-2.3.5.jar to /home/admin/integrated-genome-browser/main/target/lib/jackson-core-2.3.5.jar [INFO] Copying org.apache.felix.http.bundle-2.3.2.jar to /home/admin/integrated-genome-browser/main/target/lib/org.apache.felix.http.bundle-2.3.2.jar [INFO] Copying ncbiBlast-9.1.6.jar to /home/admin/integrated-genome-browser/main/target/lib/ncbiBlast-9.1.6.jar [INFO] Copying thresholding-9.1.6.jar to /home/admin/integrated-genome-browser/main/target/lib/thresholding-9.1.6.jar [INFO] Copying igb-javafx-util-9.1.6.jar to /home/admin/integrated-genome-browser/main/target/lib/igb-javafx-util-9.1.6.jar [INFO] Copying externalView-9.1.6.jar to /home/admin/integrated-genome-browser/main/target/lib/externalView-9.1.6.jar [INFO] Copying org.apache.felix.http.servlet-api-1.1.2.jar to /home/admin/integrated-genome-browser/main/target/lib/org.apache.felix.http.servlet-api-1.1.2.jar [INFO] Copying igb-9.1.6.jar to /home/admin/integrated-genome-browser/main/target/lib/igb-9.1.6.jar [INFO] Copying synonym-lookup-9.1.6.jar to /home/admin/integrated-genome-browser/main/target/lib/synonym-lookup-9.1.6.jar [INFO] Copying org.apache.felix.bundlerepository-2.0.10.jar to /home/admin/integrated-genome-browser/main/target/lib/org.apache.felix.bundlerepository-2.0.10.jar [INFO] Copying update-9.1.6.jar to /home/admin/integrated-genome-browser/main/target/lib/update-9.1.6.jar [INFO] Copying propertyView-9.1.6.jar to /home/admin/integrated-genome-browser/main/target/lib/propertyView-9.1.6.jar [INFO] Copying survey-9.1.6.jar to /home/admin/integrated-genome-browser/main/target/lib/survey-9.1.6.jar [INFO] Copying feedback-9.1.6.jar to /home/admin/integrated-genome-browser/main/target/lib/feedback-9.1.6.jar [INFO] Copying igb-genoviz-extensions-9.1.6.jar to /home/admin/integrated-genome-browser/main/target/lib/igb-genoviz-extensions-9.1.6.jar [INFO] Copying org.lorainelab.igb.error.reporter.api-1.0.0.jar to /home/admin/integrated-genome-browser/main/target/lib/org.lorainelab.igb.error.reporter.api-1.0.0.jar [INFO] Copying org.apache.felix.scr-1.8.2.jar to /home/admin/integrated-genome-browser/main/target/lib/org.apache.felix.scr-1.8.2.jar [INFO] Copying org.apache.felix.configadmin-1.8.8.jar to /home/admin/integrated-genome-browser/main/target/lib/org.apache.felix.configadmin-1.8.8.jar [INFO] Copying apollo-library-9.1.6.jar to /home/admin/integrated-genome-browser/main/target/lib/apollo-library-9.1.6.jar [INFO] Copying org.lorainelab.igb.menu.api-9.1.6.jar to /home/admin/integrated-genome-browser/main/target/lib/org.lorainelab.igb.menu.api-9.1.6.jar [INFO] Copying commons-compress-1.5.jar to /home/admin/integrated-genome-browser/main/target/lib/commons-compress-1.5.jar [INFO] Copying console-tab-9.1.6.jar to /home/admin/integrated-genome-browser/main/target/lib/console-tab-9.1.6.jar [INFO] Copying slf4j-api-1.7.7.jar to /home/admin/integrated-genome-browser/main/target/lib/slf4j-api-1.7.7.jar [INFO] Copying org.osgi.compendium-5.0.0.jar to /home/admin/integrated-genome-browser/main/target/lib/org.osgi.compendium-5.0.0.jar [INFO] Copying searchView-9.1.6.jar to /home/admin/integrated-genome-browser/main/target/lib/searchView-9.1.6.jar [INFO] Copying bed-9.1.6.jar to /home/admin/integrated-genome-browser/main/target/lib/bed-9.1.6.jar [INFO] [INFO] --- maven-dependency-plugin:2.9:copy (copy) @ main --- [INFO] Configured Artifact: org.lorainelab.igb:main:9.1.6:jar [INFO] Copying main-9.1.6.jar to /home/admin/integrated-genome-browser/main/target/lib/main-9.1.6.jar [INFO] [INFO] --- maven-antrun-plugin:1.7:run (buildExecutableJar) @ main --- Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-plugin-api/2.0.11/maven-plugin-api-2.0.11.pom Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-plugin-api/2.0.11/maven-plugin-api-2.0.11.pom (1.5 kB at 163 kB/s) Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven/2.0.11/maven-2.0.11.pom Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven/2.0.11/maven-2.0.11.pom (22 kB at 2.2 MB/s) Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-parent/12/maven-parent-12.pom Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-parent/12/maven-parent-12.pom (22 kB at 2.7 MB/s) Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-project/2.0.11/maven-project-2.0.11.pom Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-project/2.0.11/maven-project-2.0.11.pom (2.8 kB at 397 kB/s) Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-settings/2.0.11/maven-settings-2.0.11.pom Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-settings/2.0.11/maven-settings-2.0.11.pom (2.2 kB at 312 kB/s) Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-model/2.0.11/maven-model-2.0.11.pom Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-model/2.0.11/maven-model-2.0.11.pom (3.2 kB at 406 kB/s) Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-interpolation/1.1/plexus-interpolation-1.1.pom Downloaded from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-interpolation/1.1/plexus-interpolation-1.1.pom (1.4 kB at 180 kB/s) Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-profile/2.0.11/maven-profile-2.0.11.pom Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-profile/2.0.11/maven-profile-2.0.11.pom (2.0 kB at 204 kB/s) Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-artifact-manager/2.0.11/maven-artifact-manager-2.0.11.pom Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-artifact-manager/2.0.11/maven-artifact-manager-2.0.11.pom (2.6 kB at 376 kB/s) Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-repository-metadata/2.0.11/maven-repository-metadata-2.0.11.pom Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-repository-metadata/2.0.11/maven-repository-metadata-2.0.11.pom (2.3 kB at 161 kB/s) Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-artifact/2.0.11/maven-artifact-2.0.11.pom Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-artifact/2.0.11/maven-artifact-2.0.11.pom (1.6 kB at 226 kB/s) Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-plugin-registry/2.0.11/maven-plugin-registry-2.0.11.pom Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-plugin-registry/2.0.11/maven-plugin-registry-2.0.11.pom (1.9 kB at 129 kB/s) Downloading from central: https://repo.maven.apache.org/maven2/org/apache/ant/ant/1.8.2/ant-1.8.2.pom Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/ant/ant/1.8.2/ant-1.8.2.pom (9.9 kB at 1.1 MB/s) Downloading from central: https://repo.maven.apache.org/maven2/org/apache/ant/ant-parent/1.8.2/ant-parent-1.8.2.pom Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/ant/ant-parent/1.8.2/ant-parent-1.8.2.pom (4.7 kB at 781 kB/s) Downloading from central: https://repo.maven.apache.org/maven2/org/apache/ant/ant-launcher/1.8.2/ant-launcher-1.8.2.pom Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/ant/ant-launcher/1.8.2/ant-launcher-1.8.2.pom (2.4 kB at 346 kB/s) Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-plugin-api/2.0.11/maven-plugin-api-2.0.11.jar Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-project/2.0.11/maven-project-2.0.11.jar Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-settings/2.0.11/maven-settings-2.0.11.jar Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-profile/2.0.11/maven-profile-2.0.11.jar Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-model/2.0.11/maven-model-2.0.11.jar Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-plugin-api/2.0.11/maven-plugin-api-2.0.11.jar (13 kB at 422 kB/s) Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-artifact-manager/2.0.11/maven-artifact-manager-2.0.11.jar Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-profile/2.0.11/maven-profile-2.0.11.jar (37 kB at 630 kB/s) Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-settings/2.0.11/maven-settings-2.0.11.jar (51 kB at 843 kB/s) Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-project/2.0.11/maven-project-2.0.11.jar (123 kB at 1.9 MB/s) Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-interpolation/1.1/plexus-interpolation-1.1.jar Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-plugin-registry/2.0.11/maven-plugin-registry-2.0.11.jar Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-repository-metadata/2.0.11/maven-repository-metadata-2.0.11.jar Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-artifact-manager/2.0.11/maven-artifact-manager-2.0.11.jar (58 kB at 900 kB/s) Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-artifact/2.0.11/maven-artifact-2.0.11.jar Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-repository-metadata/2.0.11/maven-repository-metadata-2.0.11.jar (26 kB at 381 kB/s) Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-plugin-registry/2.0.11/maven-plugin-registry-2.0.11.jar (31 kB at 414 kB/s) Downloaded from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-interpolation/1.1/plexus-interpolation-1.1.jar (35 kB at 438 kB/s) Downloading from central: https://repo.maven.apache.org/maven2/org/apache/ant/ant/1.8.2/ant-1.8.2.jar Downloading from central: https://repo.maven.apache.org/maven2/org/apache/ant/ant-launcher/1.8.2/ant-launcher-1.8.2.jar Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-model/2.0.11/maven-model-2.0.11.jar (97 kB at 1.1 MB/s) Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/ant/ant-launcher/1.8.2/ant-launcher-1.8.2.jar (12 kB at 123 kB/s) Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-artifact/2.0.11/maven-artifact-2.0.11.jar (90 kB at 779 kB/s) Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/ant/ant/1.8.2/ant-1.8.2.jar (1.9 MB at 6.6 MB/s) [INFO] Executing tasks main: [jar] Building jar: /home/admin/integrated-genome-browser/igb_exe.jar [INFO] Executed tasks [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary for IGB Project 9.1.6: [INFO] [INFO] IGB Project ........................................ SUCCESS [ 0.301 s] [INFO] Core - Heatmap Editor .............................. SUCCESS [ 6.103 s] [INFO] Core - Affymetrix Common ........................... SUCCESS [ 9.654 s] [INFO] Plugin - Sorting API and Impl ...................... SUCCESS [ 1.093 s] [INFO] Plugin - Data caching API .......................... SUCCESS [ 0.369 s] [INFO] Core - Synonym Lookup .............................. SUCCESS [ 0.852 s] [INFO] Core - Genometry (Data Models) ..................... SUCCESS [ 15.410 s] [INFO] Core - Preferences ................................. SUCCESS [ 0.642 s] [INFO] Core - IGB Swing Extensions ........................ SUCCESS [ 1.728 s] [INFO] Core - Genoviz Extensions .......................... SUCCESS [ 0.796 s] [INFO] Core - IGB Services API ............................ SUCCESS [ 0.623 s] [INFO] Core - Frame Manager ............................... SUCCESS [ 0.426 s] [INFO] Core - Window Service .............................. SUCCESS [ 0.887 s] [INFO] Core - JavaFX Utilities ............................ SUCCESS [ 0.371 s] [INFO] Core - Menu API .................................... SUCCESS [ 1.871 s] [INFO] Core - Context Menu Service ........................ SUCCESS [ 0.410 s] [INFO] Core - IGB ......................................... SUCCESS [ 19.011 s] [INFO] Core - Bundle wrapper, deployer .................... SUCCESS [ 9.525 s] [INFO] Core - Logging Config .............................. SUCCESS [ 0.207 s] [INFO] Core - Web Links ................................... SUCCESS [ 1.314 s] [INFO] Plugin - Data caching GUI .......................... SUCCESS [ 1.310 s] [INFO] Core - Quickload (data source) ..................... SUCCESS [ 0.772 s] [INFO] Core - DAS (data source) ........................... SUCCESS [ 1.055 s] [INFO] Core - Das 2 (data source) ......................... SUCCESS [ 0.878 s] [INFO] Plugin - Apollo Library ............................ SUCCESS [ 0.488 s] [INFO] Plugin - Track Operations API, GUI ................. SUCCESS [ 1.019 s] [INFO] Plugin - Annotation Tab ............................ SUCCESS [ 0.823 s] [INFO] Plugin - Console Tab ............................... SUCCESS [ 0.635 s] [INFO] Plugin - Bigbed data format handler ................ SUCCESS [ 0.464 s] [INFO] Plugin - Bigwig data format handler ................ SUCCESS [ 0.405 s] [INFO] Plugin - Bookmarks and REST API .................... SUCCESS [ 1.727 s] [INFO] Plugin - External View ............................. SUCCESS [ 1.112 s] [INFO] Plugin - Graph Tab ................................. SUCCESS [ 0.763 s] [INFO] Plugin - Save Image GUI ............................ SUCCESS [ 1.028 s] [INFO] Plugin - Script handler ............................ SUCCESS [ 0.524 s] [INFO] Plugin - Keyword Search ............................ SUCCESS [ 0.332 s] [INFO] Plugin - NCBI Blast ................................ SUCCESS [ 0.636 s] [INFO] Plugin - Selection Info tab ........................ SUCCESS [ 0.851 s] [INFO] Plugin - Restriction Sites tab ..................... SUCCESS [ 0.709 s] [INFO] Plugin - Search Id or Props ........................ SUCCESS [ 0.414 s] [INFO] Plugin - Advanced Search Tab ....................... SUCCESS [ 0.954 s] [INFO] Plugin - Sequence Viewer GUI ....................... SUCCESS [ 0.752 s] [INFO] Plugin - Survey GUI ................................ SUCCESS [ 0.449 s] [INFO] Plugin - Graph thresholding visual analytics ....... SUCCESS [ 0.763 s] [INFO] Plugin - Update .................................... SUCCESS [ 0.347 s] [INFO] Plugin - App Manager GUI ........................... SUCCESS [ 3.506 s] [INFO] Plugin - Paired-end Read Preprocessor .............. SUCCESS [ 0.356 s] [INFO] Plugin - Save Session Manager ...................... SUCCESS [ 0.537 s] [INFO] Plugin - Toolbar Preferences GUI ................... SUCCESS [ 1.171 s] [INFO] Plugin - Error reporting ........................... SUCCESS [ 0.660 s] [INFO] Plugin - Feedback .................................. SUCCESS [ 0.462 s] [INFO] Plugin - Narrowpeak data format handler ............ SUCCESS [ 0.444 s] [INFO] Plugin - File Handler - Genotyping Results ........ SUCCESS [ 0.695 s] [INFO] Plugin - BED file format handler ................... SUCCESS [ 0.620 s] [INFO] Plugin - BAM data format handler ................... SUCCESS [ 0.683 s] [INFO] Plugin - BAI index visualization handler ........... SUCCESS [ 0.596 s] [INFO] Plugin - App Store REST API ........................ SUCCESS [ 0.352 s] [INFO] IGB Main (run me) .................................. SUCCESS [ 16.868 s] [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ [INFO] Total time: 02:00 min [INFO] Finished at: 2020-06-30T14:54:37Z [INFO] ------------------------------------------------------------------------ admin@ip-172-31-37-74:~/integrated-genome-browser$