12:39:35.467 INFO o.l.i.appstore.IgbAppServerLauncher - setPlugingManagerService START 12:39:35.478 INFO o.l.i.appstore.IgbAppServerLauncher - setPluginManagerService DONE 12:39:35.479 INFO o.l.i.appstore.IgbAppServerLauncher - activate START 12:39:35.479 INFO o.l.i.appstore.IgbAppServerLauncher - org.lorainelab.igb.plugin.manager.service.impl.PluginManagerServiceImpl@512abf25 12:39:35.487 INFO o.l.i.appstore.IgbAppServerLauncher - activate DONE 12:39:35.592 WARN o.l.i.quickload.util.QuickloadUtils - Optional species.txt could not be loaded from: http://lorainelab-quickload.scidas.org/dnaseq/species.txt 12:39:35.615 INFO o.l.i.q.QuickloadDataProvider - Initializing Quickload Server http://lorainelab-quickload.scidas.org/chipseq/ 12:39:35.935 WARN o.l.i.quickload.util.QuickloadUtils - Optional quickload synonyms.txt file could not be loaded from http://lorainelab-quickload.scidas.org/chipseq/synonyms.txt 12:39:36.089 WARN o.l.i.quickload.util.QuickloadUtils - Optional species.txt could not be loaded from: http://lorainelab-quickload.scidas.org/chipseq/species.txt 12:39:38.324 INFO com.affymetrix.igb.Activator - IGB Started 12:39:38.592 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: org.tukaani.xz ERROR: org.apache.felix.framework.cache.BundleArchive: Unable to cache bundle info - java.io.FileNotFoundException: /home/chester/.igb/bundles/v9.1.6-bundle-cache/bundle92/bundle.info (No such file or directory) ERROR: Bundle org.tukaani.xz [92] Error writing persistent state to bundle archive. (java.io.FileNotFoundException: /home/chester/.igb/bundles/v9.1.6-bundle-cache/bundle92/bundle.info (No such file or directory)) java.io.FileNotFoundException: /home/chester/.igb/bundles/v9.1.6-bundle-cache/bundle92/bundle.info (No such file or directory) at java.io.FileOutputStream.open0(Native Method) at java.io.FileOutputStream.open(FileOutputStream.java:270) at java.io.FileOutputStream.(FileOutputStream.java:213) at java.io.FileOutputStream.(FileOutputStream.java:162) at org.apache.felix.framework.util.SecureAction.getFileOutputStream(SecureAction.java:478) at org.apache.felix.framework.cache.BundleArchive.writeBundleInfo(BundleArchive.java:994) at org.apache.felix.framework.cache.BundleArchive.setPersistentState(BundleArchive.java:295) at org.apache.felix.framework.BundleImpl.setPersistentStateActive(BundleImpl.java:818) at org.apache.felix.framework.Felix.startBundle(Felix.java:1991) at org.apache.felix.framework.BundleImpl.start(BundleImpl.java:977) at org.apache.felix.framework.BundleImpl.start(BundleImpl.java:964) at com.affymetrix.main.OSGiHandler.loadBundles(OSGiHandler.java:83) at com.affymetrix.main.OSGiHandler.startOSGi(OSGiHandler.java:63) at com.affymetrix.main.Main.main(Main.java:30) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at com.exe4j.runtime.LauncherEngine.launch(LauncherEngine.java:84) at com.install4j.runtime.launcher.UnixLauncher.start(UnixLauncher.java:66) at install4j.com.affymetrix.main.Main.main(Unknown Source) 12:39:38.620 [main] INFO com.affymetrix.main.OSGiHandler - OSGi is started with org.apache.felix.framework version 5.2.0 12:39:42.260 INFO o.l.i.appstore.IgbAppServerLauncher - Started REST endpoint. 12:42:51.853 INFO c.a.igb.util.IGBTrustManager - Authenticated CN=DigiCert SHA2 Extended Validation Server CA,OU=www.digicert.com,O=DigiCert Inc,C=US,CN=DigiCert High Assurance EV Root CA,OU=www.digicert.com,O=DigiCert Inc,C=US, certificates using default trust store 12:42:52.101 INFO c.a.igb.util.IGBTrustManager - Authenticated CN=DigiCert Baltimore CA-2 G2,OU=www.digicert.com,O=DigiCert Inc,C=US,CN=Baltimore CyberTrust Root,OU=CyberTrust,O=Baltimore,C=IE, certificates using default trust store 14:08:15.734 INFO c.a.igb.util.IGBTrustManager - Authenticated CN=DigiCert SHA2 Secure Server CA,O=DigiCert Inc,C=US,CN=DigiCert Global Root CA,OU=www.digicert.com,O=DigiCert Inc,C=US, certificates using default trust store 14:12:05.371 INFO c.a.igb.util.IGBTrustManager - Authenticated CN=DigiCert SHA2 Extended Validation Server CA,OU=www.digicert.com,O=DigiCert Inc,C=US,CN=DigiCert High Assurance EV Root CA,OU=www.digicert.com,O=DigiCert Inc,C=US, certificates using default trust store 14:12:05.546 INFO c.a.igb.util.IGBTrustManager - Authenticated CN=DigiCert Baltimore CA-2 G2,OU=www.digicert.com,O=DigiCert Inc,C=US,CN=Baltimore CyberTrust Root,OU=CyberTrust,O=Baltimore,C=IE, certificates using default trust store 14:13:06.009 INFO c.a.igb.util.IGBTrustManager - Authenticated CN=DigiCert SHA2 Secure Server CA,O=DigiCert Inc,C=US,CN=DigiCert Global Root CA,OU=www.digicert.com,O=DigiCert Inc,C=US, certificates using default trust store 14:16:11.648 INFO o.l.i.p.manager.BundleActionManager - Installed app: org.lorainelab.igb.geometric-mean,9.0.0 14:16:11.652 INFO com.affymetrix.igb.IGB - bundle org.lorainelab.igb.geometric-mean;9.0.0 installed 14:17:34.500 INFO o.l.i.p.manager.BundleActionManager - Uninstalled app: org.lorainelab.igb.geometric-mean,9.0.0 14:18:54.529 INFO o.l.igb.plugin.manager.JSLogger - 14:18:54.558 INFO c.a.igb.util.IGBTrustManager - Authenticated CN=DigiCert SHA2 Secure Server CA,O=DigiCert Inc,C=US,CN=DigiCert Global Root CA,OU=www.digicert.com,O=DigiCert Inc,C=US, certificates using default trust store 14:18:55.061 INFO c.a.igb.util.IGBTrustManager - Authenticated CN=DigiCert Baltimore CA-2 G2,OU=www.digicert.com,O=DigiCert Inc,C=US,CN=Baltimore CyberTrust Root,OU=CyberTrust,O=Baltimore,C=IE, certificates using default trust store 14:18:55.353 INFO o.l.i.p.manager.BundleActionManager - Installed app: org.lorainelab.igb.protannot,9.1.3 14:18:55.355 INFO com.affymetrix.igb.IGB - bundle org.lorainelab.igb.protannot;9.1.3 installed 14:19:45.638 INFO o.l.igb.plugin.manager.JSLogger - 14:19:45.665 INFO o.l.i.p.manager.BundleActionManager - Uninstalled app: org.lorainelab.igb.protannot,9.1.3 14:21:32.053 INFO c.a.igb.util.IGBTrustManager - Authenticated CN=DigiCert Baltimore CA-2 G2,OU=www.digicert.com,O=DigiCert Inc,C=US,CN=Baltimore CyberTrust Root,OU=CyberTrust,O=Baltimore,C=IE, certificates using default trust store 14:21:32.249 INFO o.l.i.p.manager.BundleActionManager - Installed app: igb-command-socket,9.1.0 14:21:32.249 INFO o.l.igbr.SocketCommandListener - Opening IGB command socket 14:21:32.251 INFO com.affymetrix.igb.IGB - bundle igb-command-socket;9.1.0 installed 14:22:48.833 INFO o.l.igbr.SocketCommandListener - Closing IGB command socket 14:22:48.839 INFO o.l.i.p.manager.BundleActionManager - Uninstalled app: igb-command-socket,9.1.0 14:22:48.843 INFO o.l.igb.plugin.manager.JSLogger -