C_elegans_Oct_2010	ce10 ce10-blacklist.v2.bed.gz C_elegans_Oct_2010_blacklist.v2.bed.gz
C_elegans_Feb_2013	ce11 ce11-blacklist.v2.bed.gz C_elegans_Feb_2013_blacklist.v2.bed.gz
D_melanogaster_Apr_2006 dm3 dm3-blacklist.v2.bed.gz D_melanogaster_Apr_2006_blacklist.v2.bed.gz
D_melanogaster_Aug_2014	dm6 dm6-blacklist.v2.bed.gz ???????
H_sapiens_Feb_2009	hg19 hg19-blacklist.v2.bed.gz H_sapiens_Feb_2009_blacklist.v2.bed.gz
H_sapiens_Dec_2013	hg38 hg38-blacklist.v2.bed.gz H_sapiens_Dec_2013_blacklist.v2.bed.gz
M_musculus_Dec_2011	mm10 mm10-blacklist.v2.bed.gz M_musculus_Dec_2011_blacklist.v2.bed.gz

For the IGB tooltip:
ENCODE-identified problematic regions of the genome (ce10-blacklist.v2.bed.gz)
ENCODE-identified problematic regions of the genome (ce11-blacklist.v2.bed.gz)
ENCODE-identified problematic regions of the genome (dm3-blacklist.v2.bed.gz)
ENCODE-identified problematic regions of the genome (dm6-blacklist.v2.bed.gz)
ENCODE-identified problematic regions of the genome (hg19-blacklist.v2.bed.gz)
ENCODE-identified problematic regions of the genome (hg38-blacklist.v2.bed.gz)
ENCODE-identified problematic regions of the genome (mm10-blacklist.v2.bed.gz)

Name of title:
ENCODE blacklist

Jira ticket number in the SVN commit

IGBF-2696;Add ce10 ENCODE blacklist v2;Sep 22, 2021
IGBF-2696;Add ce11 ENCODE blacklist v2;Sep 22, 2021
IGBF-2696;Add dm3 ENCODE blacklist v2;Sep 22, 2021

IGBF-2696;Add hg19 ENCODE blacklist v2;Sep 22, 2021
IGBF-2696;Add hg38 ENCODE blacklist v2;Sep 22, 2021
IGBF-2696;Add mm10 ENCODE blacklist v2;Sep 22, 2021