[INFO] Scanning for projects... [WARNING] [WARNING] Some problems were encountered while building the effective model for org.lorainelab.igb:affymetrix-common:bundle:10.0.0 [WARNING] 'dependencies.dependency.(groupId:artifactId:type:classifier)' must be unique: org.slf4j:slf4j-api:jar -> duplicate declaration of version (?) @ line 58, column 21 [WARNING] [WARNING] It is highly recommended to fix these problems because they threaten the stability of your build. [WARNING] [WARNING] For this reason, future Maven versions might no longer support building such malformed projects. [WARNING] [INFO] ------------------------------------------------------------------------ [INFO] Reactor Build Order: [INFO] [INFO] IGB Project [pom] [INFO] Core - Heatmap Editor [bundle] [INFO] Core - Affymetrix Common [bundle] [INFO] Plugin - Sorting API and Impl [bundle] [INFO] Plugin - Data caching API [bundle] [INFO] Core - Synonym Lookup [bundle] [INFO] Core - Genometry (Data Models) [bundle] [INFO] Core - Preferences [bundle] [INFO] Core - IGB Swing Extensions [bundle] [INFO] Core - Genoviz Extensions [bundle] [INFO] Core - IGB Services API [bundle] [INFO] Core - Frame Manager [bundle] [INFO] Core - Window Service [bundle] [INFO] Core - JavaFX Utilities [bundle] [INFO] Core - Menu API [bundle] [INFO] Core - Context Menu Service [bundle] [INFO] Core - IGB [bundle] [INFO] Core - Bundle wrapper, deployer [bundle] [INFO] Core - Logging Config [bundle] [INFO] Core - Web Links [bundle] [INFO] Plugin - Data caching GUI [bundle] [INFO] Core - Quickload (data source) [bundle] [INFO] Core - DAS (data source) [bundle] [INFO] Plugin - Apollo Library [bundle] [INFO] Plugin - Track Operations API, GUI [bundle] [INFO] Plugin - Annotation Tab [bundle] [INFO] Plugin - Console Tab [bundle] [INFO] Plugin - Bigbed data format handler [bundle] [INFO] Plugin - Bigwig data format handler [bundle] [INFO] Plugin - Bookmarks and REST API [bundle] [INFO] Plugin - External View [bundle] [INFO] Plugin - Graph Tab [bundle] [INFO] Plugin - Save Image GUI [bundle] [INFO] Plugin - Script handler [bundle] [INFO] Plugin - Keyword Search [bundle] [INFO] Plugin - NCBI Blast [bundle] [INFO] Plugin - Selection Info tab [bundle] [INFO] Plugin - Restriction Sites tab [bundle] [INFO] Plugin - Search Id or Props [bundle] [INFO] Plugin - Advanced Search Tab [bundle] [INFO] Plugin - Sequence Viewer GUI [bundle] [INFO] Plugin - Survey GUI [bundle] [INFO] Plugin - Graph thresholding visual analytics [bundle] [INFO] Plugin - Update [bundle] [INFO] Plugin - App Manager GUI [bundle] [INFO] Plugin - Paired-end Read Preprocessor [bundle] [INFO] Plugin - Save Session Manager [bundle] [INFO] Plugin - Toolbar Preferences GUI [bundle] [INFO] Plugin - Feedback [bundle] [INFO] Plugin - Narrowpeak data format handler [bundle] [INFO] Plugin - File Handler - Genotyping Results [bundle] [INFO] Plugin - BED file format handler [bundle] [INFO] Plugin - BAM data format handler [bundle] [INFO] Plugin - BAI index visualization handler [bundle] [INFO] Plugin - App Store REST API [bundle] [INFO] IGB Main (run me) [jar] [INFO] [INFO] -------------------< org.lorainelab.igb:igb-project >------------------- [INFO] Building IGB Project 10.0.0 [1/56] [INFO] from pom.xml [INFO] --------------------------------[ pom ]--------------------------------- [INFO] [INFO] --- clean:3.2.0:clean (default-clean) @ igb-project --- [INFO] Deleting C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles (includes = [*.jar, repository.xml], excludes = []) [INFO] Deleting C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\dynamic (includes = [*.jar], excludes = []) [INFO] [INFO] --- install:3.1.0:install (default-install) @ igb-project --- [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\pom.xml to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\igb-project\10.0.0\igb-project-10.0.0.pom [INFO] [INFO] -----------------< org.lorainelab.igb:heatmap-editor >------------------ [INFO] Building Core - Heatmap Editor 10.0.0 [2/56] [INFO] from core\heatmap-editor\pom.xml [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- clean:3.3.2:clean (default-clean) @ heatmap-editor --- [INFO] Deleting C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\heatmap-editor\target [INFO] [INFO] --- resources:3.3.1:resources (default-resources) @ heatmap-editor --- [INFO] Copying 0 resource from src\main\java to target\classes [INFO] Copying 1 resource from src\main\resources to target\classes [INFO] [INFO] --- compiler:3.11.0:compile (default-compile) @ heatmap-editor --- [INFO] Changes detected - recompiling the module! :source [INFO] Compiling 14 source files with javac [debug target 21] to target\classes [INFO] [INFO] --- resources:3.3.1:testResources (default-testResources) @ heatmap-editor --- [INFO] Copying 1 resource from src\test\resources to target\test-classes [INFO] [INFO] --- compiler:3.11.0:testCompile (default-testCompile) @ heatmap-editor --- [INFO] No sources to compile [INFO] [INFO] --- surefire:3.1.2:test (default-test) @ heatmap-editor --- [INFO] Tests are skipped. [INFO] [INFO] --- bundle:5.1.9:bundle (default-bundle) @ heatmap-editor --- [INFO] Building bundle: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\heatmap-editor\target\heatmap-editor-10.0.0.jar [INFO] Writing manifest: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\heatmap-editor\target\classes\META-INF\MANIFEST.MF [INFO] [INFO] --- install:3.1.1:install (default-install) @ heatmap-editor --- [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\heatmap-editor\pom.xml to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\heatmap-editor\10.0.0\heatmap-editor-10.0.0.pom [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\heatmap-editor\target\heatmap-editor-10.0.0.jar to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\heatmap-editor\10.0.0\heatmap-editor-10.0.0.jar [INFO] [INFO] --- bundle:5.1.9:install (default-install) @ heatmap-editor --- [INFO] Installing org/lorainelab/igb/heatmap-editor/10.0.0/heatmap-editor-10.0.0.jar [INFO] Writing OBR metadata [INFO] [INFO] --- dependency:3.5.0:copy (copy) @ heatmap-editor --- [INFO] Configured Artifact: org.lorainelab.igb:heatmap-editor:10.0.0:jar [INFO] Copying heatmap-editor-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\heatmap-editor-10.0.0.jar [INFO] [INFO] ----------------< org.lorainelab.igb:affymetrix-common >---------------- [INFO] Building Core - Affymetrix Common 10.0.0 [3/56] [INFO] from core\common\pom.xml [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- clean:3.3.2:clean (default-clean) @ affymetrix-common --- [INFO] Deleting C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\common\target [INFO] [INFO] --- resources:3.3.1:resources (default-resources) @ affymetrix-common --- [INFO] Copying 286 resources from src\main\resources to target\classes [INFO] The encoding used to copy filtered properties files have not been set. This means that the same encoding will be used to copy filtered properties files as when copying other filtered resources. This might not be what you want! Run your build with --debug to see which files might be affected. Read more at https://maven.apache.org/plugins/maven-resources-plugin/examples/filtering-properties-files.html [INFO] [INFO] --- compiler:3.11.0:compile (default-compile) @ affymetrix-common --- [INFO] Changes detected - recompiling the module! :source [INFO] Compiling 6 source files with javac [debug target 21] to target\classes [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/core/common/src/main/java/com/affymetrix/common/CommonUtils.java: Some input files use or override a deprecated API. [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/core/common/src/main/java/com/affymetrix/common/CommonUtils.java: Recompile with -Xlint:deprecation for details. [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/core/common/src/main/java/com/affymetrix/common/PreferenceUtils.java: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\common\src\main\java\com\affymetrix\common\PreferenceUtils.java uses unchecked or unsafe operations. [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/core/common/src/main/java/com/affymetrix/common/PreferenceUtils.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- resources:3.3.1:testResources (default-testResources) @ affymetrix-common --- [INFO] skip non existing resourceDirectory C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\common\src\test\resources [INFO] [INFO] --- compiler:3.11.0:testCompile (default-testCompile) @ affymetrix-common --- [INFO] No sources to compile [INFO] [INFO] --- surefire:3.1.2:test (default-test) @ affymetrix-common --- [INFO] Tests are skipped. [INFO] [INFO] --- bundle:5.1.9:bundle (default-bundle) @ affymetrix-common --- [INFO] Building bundle: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\common\target\affymetrix-common-10.0.0.jar [INFO] Writing manifest: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\common\target\classes\META-INF\MANIFEST.MF [INFO] [INFO] --- install:3.1.1:install (default-install) @ affymetrix-common --- [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\common\pom.xml to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\affymetrix-common\10.0.0\affymetrix-common-10.0.0.pom [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\common\target\affymetrix-common-10.0.0.jar to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\affymetrix-common\10.0.0\affymetrix-common-10.0.0.jar [INFO] [INFO] --- bundle:5.1.9:install (default-install) @ affymetrix-common --- [INFO] Installing org/lorainelab/igb/affymetrix-common/10.0.0/affymetrix-common-10.0.0.jar [INFO] Writing OBR metadata [INFO] [INFO] --- dependency:3.5.0:copy (copy) @ affymetrix-common --- [INFO] Configured Artifact: org.lorainelab.igb:affymetrix-common:10.0.0:jar [INFO] Copying affymetrix-common-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\affymetrix-common-10.0.0.jar [INFO] [INFO] ------------------< org.lorainelab.igb:external-sort >------------------ [INFO] Building Plugin - Sorting API and Impl 10.0.0 [4/56] [INFO] from plugins\external-sort\pom.xml [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- clean:3.3.2:clean (default-clean) @ external-sort --- [INFO] Deleting C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\external-sort\target [INFO] Deleting C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\dynamic (includes = [external-sort-10.0.0.jar], excludes = []) [INFO] [INFO] --- resources:3.3.1:resources (default-resources) @ external-sort --- [INFO] Copying 0 resource from src\main\java to target\classes [INFO] skip non existing resourceDirectory C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\external-sort\src\main\resources [INFO] [INFO] --- compiler:3.11.0:compile (default-compile) @ external-sort --- [INFO] Changes detected - recompiling the module! :source [INFO] Compiling 7 source files with javac [debug target 21] to target\classes [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/plugins/external-sort/src/main/java/org/lorainelab/igb/externalsort/api/ExternalSortConfiguration.java: Some input files use or override a deprecated API. [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/plugins/external-sort/src/main/java/org/lorainelab/igb/externalsort/api/ExternalSortConfiguration.java: Recompile with -Xlint:deprecation for details. [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/plugins/external-sort/src/main/java/org/lorainelab/igb/externalsort/api/ComparatorMetadata.java: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\external-sort\src\main\java\org\lorainelab\igb\externalsort\api\ComparatorMetadata.java uses unchecked or unsafe operations. [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/plugins/external-sort/src/main/java/org/lorainelab/igb/externalsort/api/ComparatorMetadata.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- resources:3.3.1:testResources (default-testResources) @ external-sort --- [INFO] Copying 2 resources from src\test\resources to target\test-classes [INFO] [INFO] --- compiler:3.11.0:testCompile (default-testCompile) @ external-sort --- [INFO] Changes detected - recompiling the module! :dependency [INFO] Compiling 1 source file with javac [debug target 21] to target\test-classes [INFO] [INFO] --- surefire:3.1.2:test (default-test) @ external-sort --- [INFO] Tests are skipped. [INFO] [INFO] --- bundle:5.1.9:bundle (default-bundle) @ external-sort --- [WARNING] Bundle org.lorainelab.igb:external-sort:bundle:10.0.0 : Service-Component is normally generated by bnd. If you want to point at specific component XML files (wildcards are allowed, see findEntries) make sure it ends in '.xml'. Found * [INFO] Building bundle: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\external-sort\target\external-sort-10.0.0.jar [INFO] Writing manifest: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\external-sort\target\classes\META-INF\MANIFEST.MF [INFO] [INFO] --- install:3.1.1:install (default-install) @ external-sort --- [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\external-sort\pom.xml to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\external-sort\10.0.0\external-sort-10.0.0.pom [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\external-sort\target\external-sort-10.0.0.jar to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\external-sort\10.0.0\external-sort-10.0.0.jar [INFO] [INFO] --- bundle:5.1.9:install (default-install) @ external-sort --- [INFO] Installing org/lorainelab/igb/external-sort/10.0.0/external-sort-10.0.0.jar [INFO] Writing OBR metadata [INFO] [INFO] --- dependency:3.5.0:copy (copy) @ external-sort --- [INFO] Configured Artifact: org.lorainelab.igb:external-sort:10.0.0:jar [INFO] Copying external-sort-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\dynamic\external-sort-10.0.0.jar [INFO] [INFO] --------------------< org.lorainelab.igb:cache-api >-------------------- [INFO] Building Plugin - Data caching API 10.0.0 [5/56] [INFO] from plugins\cache-api\pom.xml [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- clean:3.3.2:clean (default-clean) @ cache-api --- [INFO] Deleting C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\cache-api\target [INFO] [INFO] --- resources:3.3.1:resources (default-resources) @ cache-api --- [INFO] Copying 0 resource from src\main\java to target\classes [INFO] skip non existing resourceDirectory C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\cache-api\src\main\resources [INFO] [INFO] --- compiler:3.11.0:compile (default-compile) @ cache-api --- [INFO] Changes detected - recompiling the module! :source [INFO] Compiling 3 source files with javac [debug target 1.8] to target\classes [WARNING] bootstrap class path not set in conjunction with -source 8 [WARNING] source value 8 is obsolete and will be removed in a future release [WARNING] target value 8 is obsolete and will be removed in a future release [WARNING] To suppress warnings about obsolete options, use -Xlint:-options. [INFO] [INFO] --- resources:3.3.1:testResources (default-testResources) @ cache-api --- [INFO] skip non existing resourceDirectory C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\cache-api\src\test\resources [INFO] [INFO] --- compiler:3.11.0:testCompile (default-testCompile) @ cache-api --- [INFO] No sources to compile [INFO] [INFO] --- surefire:3.1.2:test (default-test) @ cache-api --- [INFO] Tests are skipped. [INFO] [INFO] --- bundle:5.1.9:bundle (default-bundle) @ cache-api --- [WARNING] Bundle org.lorainelab.igb:cache-api:bundle:10.0.0 : Service-Component is normally generated by bnd. If you want to point at specific component XML files (wildcards are allowed, see findEntries) make sure it ends in '.xml'. Found * [INFO] Building bundle: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\cache-api\target\cache-api-10.0.0.jar [INFO] Writing manifest: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\cache-api\target\classes\META-INF\MANIFEST.MF [INFO] [INFO] --- install:3.1.1:install (default-install) @ cache-api --- [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\cache-api\pom.xml to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\cache-api\10.0.0\cache-api-10.0.0.pom [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\cache-api\target\cache-api-10.0.0.jar to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\cache-api\10.0.0\cache-api-10.0.0.jar [INFO] [INFO] --- bundle:5.1.9:install (default-install) @ cache-api --- [INFO] Installing org/lorainelab/igb/cache-api/10.0.0/cache-api-10.0.0.jar [INFO] Writing OBR metadata [INFO] [INFO] --- dependency:3.5.0:copy (copy) @ cache-api --- [INFO] Configured Artifact: org.lorainelab.igb:cache-api:10.0.0:jar [INFO] Copying cache-api-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\cache-api-10.0.0.jar [INFO] [INFO] -----------------< org.lorainelab.igb:synonym-lookup >------------------ [INFO] Building Core - Synonym Lookup 10.0.0 [6/56] [INFO] from core\synonym-lookup\pom.xml [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- clean:3.3.2:clean (default-clean) @ synonym-lookup --- [INFO] Deleting C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\synonym-lookup\target [INFO] [INFO] --- resources:3.3.1:resources (default-resources) @ synonym-lookup --- [INFO] Copying 0 resource from src\main\java to target\classes [INFO] Copying 3 resources from src\main\resources to target\classes [INFO] [INFO] --- compiler:3.11.0:compile (default-compile) @ synonym-lookup --- [INFO] Changes detected - recompiling the module! :source [INFO] Compiling 9 source files with javac [debug target 21] to target\classes [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/core/synonym-lookup/src/main/java/org/lorainelab/igb/synonymlookup/services/impl/SynonymLookup.java: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\synonym-lookup\src\main\java\org\lorainelab\igb\synonymlookup\services\impl\SynonymLookup.java uses or overrides a deprecated API. [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/core/synonym-lookup/src/main/java/org/lorainelab/igb/synonymlookup/services/impl/SynonymLookup.java: Recompile with -Xlint:deprecation for details. [INFO] [INFO] --- resources:3.3.1:testResources (default-testResources) @ synonym-lookup --- [INFO] Copying 3 resources from src\test\resources to target\test-classes [INFO] [INFO] --- compiler:3.11.0:testCompile (default-testCompile) @ synonym-lookup --- [INFO] Changes detected - recompiling the module! :dependency [INFO] Compiling 1 source file with javac [debug target 21] to target\test-classes [INFO] [INFO] --- surefire:3.1.2:test (default-test) @ synonym-lookup --- [INFO] Tests are skipped. [INFO] [INFO] --- bundle:5.1.9:bundle (default-bundle) @ synonym-lookup --- [WARNING] Bundle org.lorainelab.igb:synonym-lookup:bundle:10.0.0 : Service-Component is normally generated by bnd. If you want to point at specific component XML files (wildcards are allowed, see findEntries) make sure it ends in '.xml'. Found * [INFO] Building bundle: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\synonym-lookup\target\synonym-lookup-10.0.0.jar [INFO] Writing manifest: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\synonym-lookup\target\classes\META-INF\MANIFEST.MF [INFO] [INFO] --- install:3.1.1:install (default-install) @ synonym-lookup --- [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\synonym-lookup\pom.xml to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\synonym-lookup\10.0.0\synonym-lookup-10.0.0.pom [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\synonym-lookup\target\synonym-lookup-10.0.0.jar to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\synonym-lookup\10.0.0\synonym-lookup-10.0.0.jar [INFO] [INFO] --- bundle:5.1.9:install (default-install) @ synonym-lookup --- [INFO] Installing org/lorainelab/igb/synonym-lookup/10.0.0/synonym-lookup-10.0.0.jar [INFO] Writing OBR metadata [INFO] [INFO] --- dependency:3.5.0:copy (copy) @ synonym-lookup --- [INFO] Configured Artifact: org.lorainelab.igb:synonym-lookup:10.0.0:jar [INFO] Copying synonym-lookup-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\synonym-lookup-10.0.0.jar [INFO] [INFO] --------------------< org.lorainelab.igb:genometry >-------------------- [INFO] Building Core - Genometry (Data Models) 10.0.0 [7/56] [INFO] from core\genometry\pom.xml [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- clean:3.3.2:clean (default-clean) @ genometry --- [INFO] Deleting C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\genometry\target [INFO] [INFO] --- resources:3.3.1:resources (default-resources) @ genometry --- [INFO] Copying 0 resource from src\main\java to target\classes [INFO] Copying 2 resources from src\main\resources to target\classes [INFO] [INFO] --- compiler:3.11.0:compile (default-compile) @ genometry --- [INFO] Changes detected - recompiling the module! :dependency [INFO] Compiling 366 source files with javac [debug target 21] to target\classes [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/core/genometry/src/main/java/com/affymetrix/genometry/symmetry/impl/SimpleSymWithProps.java: Some input files use or override a deprecated API. [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/core/genometry/src/main/java/com/affymetrix/genometry/symmetry/impl/SimpleSymWithProps.java: Recompile with -Xlint:deprecation for details. [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/core/genometry/src/main/java/com/affymetrix/genometry/thread/CThreadWorker.java: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\genometry\src\main\java\com\affymetrix\genometry\thread\CThreadWorker.java uses unchecked or unsafe operations. [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/core/genometry/src/main/java/com/affymetrix/genometry/thread/CThreadWorker.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- resources:3.3.1:testResources (default-testResources) @ genometry --- [INFO] Copying 58 resources from src\test\resources to target\test-classes [INFO] [INFO] --- compiler:3.11.0:testCompile (default-testCompile) @ genometry --- [INFO] Changes detected - recompiling the module! :dependency [INFO] Compiling 27 source files with javac [debug target 21] to target\test-classes [WARNING] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/core/genometry/src/test/java/com/affymetrix/genometry/parsers/GFFParserTest.java:[57,26] Float(double) in java.lang.Float has been deprecated and marked for removal [INFO] [INFO] --- surefire:3.1.2:test (default-test) @ genometry --- [INFO] Tests are skipped. [INFO] [INFO] --- bundle:5.1.9:bundle (default-bundle) @ genometry --- [WARNING] Bundle org.lorainelab.igb:genometry:bundle:10.0.0 : Service-Component is normally generated by bnd. If you want to point at specific component XML files (wildcards are allowed, see findEntries) make sure it ends in '.xml'. Found * [INFO] Building bundle: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\genometry\target\genometry-10.0.0.jar [INFO] Writing manifest: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\genometry\target\classes\META-INF\MANIFEST.MF [INFO] [INFO] --- install:3.1.1:install (default-install) @ genometry --- [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\genometry\pom.xml to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\genometry\10.0.0\genometry-10.0.0.pom [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\genometry\target\genometry-10.0.0.jar to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\genometry\10.0.0\genometry-10.0.0.jar [INFO] [INFO] --- bundle:5.1.9:install (default-install) @ genometry --- [INFO] Installing org/lorainelab/igb/genometry/10.0.0/genometry-10.0.0.jar [INFO] Writing OBR metadata [INFO] [INFO] --- dependency:3.5.0:copy (copy) @ genometry --- [INFO] Configured Artifact: org.lorainelab.igb:genometry:10.0.0:jar [INFO] Copying genometry-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\genometry-10.0.0.jar [INFO] [INFO] -----------------< org.lorainelab.igb:igb-preferences >----------------- [INFO] Building Core - Preferences 10.0.0 [8/56] [INFO] from core\igb-preferences\pom.xml [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- clean:3.3.2:clean (default-clean) @ igb-preferences --- [INFO] Deleting C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\igb-preferences\target [INFO] [INFO] --- resources:3.3.1:resources (default-resources) @ igb-preferences --- [INFO] Copying 0 resource from src\main\java to target\classes [INFO] Copying 1 resource from src\main\resources to target\classes [INFO] [INFO] --- compiler:3.11.0:compile (default-compile) @ igb-preferences --- [INFO] Changes detected - recompiling the module! :source [INFO] Compiling 8 source files with javac [debug target 21] to target\classes [INFO] [INFO] --- resources:3.3.1:testResources (default-testResources) @ igb-preferences --- [INFO] Copying 1 resource from src\test\resources to target\test-classes [INFO] [INFO] --- compiler:3.11.0:testCompile (default-testCompile) @ igb-preferences --- [INFO] Changes detected - recompiling the module! :dependency [INFO] Compiling 1 source file with javac [debug target 21] to target\test-classes [INFO] [INFO] --- surefire:3.1.2:test (default-test) @ igb-preferences --- [INFO] Tests are skipped. [INFO] [INFO] --- bundle:5.1.9:bundle (default-bundle) @ igb-preferences --- [WARNING] Bundle org.lorainelab.igb:igb-preferences:bundle:10.0.0 : Service-Component is normally generated by bnd. If you want to point at specific component XML files (wildcards are allowed, see findEntries) make sure it ends in '.xml'. Found * [INFO] Building bundle: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\igb-preferences\target\igb-preferences-10.0.0.jar [INFO] Writing manifest: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\igb-preferences\target\classes\META-INF\MANIFEST.MF [INFO] [INFO] --- install:3.1.1:install (default-install) @ igb-preferences --- [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\igb-preferences\pom.xml to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\igb-preferences\10.0.0\igb-preferences-10.0.0.pom [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\igb-preferences\target\igb-preferences-10.0.0.jar to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\igb-preferences\10.0.0\igb-preferences-10.0.0.jar [INFO] [INFO] --- bundle:5.1.9:install (default-install) @ igb-preferences --- [INFO] Installing org/lorainelab/igb/igb-preferences/10.0.0/igb-preferences-10.0.0.jar [INFO] Writing OBR metadata [INFO] [INFO] --- dependency:3.5.0:copy (copy) @ igb-preferences --- [INFO] Configured Artifact: org.lorainelab.igb:igb-preferences:10.0.0:jar [INFO] Copying igb-preferences-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\igb-preferences-10.0.0.jar [INFO] [INFO] -------------------< org.lorainelab.igb:igbSwingExt >------------------- [INFO] Building Core - IGB Swing Extensions 10.0.0 [9/56] [INFO] from core\igb-swing-ext\pom.xml [INFO] -------------------------------[ bundle ]------------------------------- [WARNING] The POM for com.jidesoft:jide-ultimate-jakarta:jar:3.5.15 is missing, no dependency information available [INFO] [INFO] --- clean:3.3.2:clean (default-clean) @ igbSwingExt --- [INFO] Deleting C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\igb-swing-ext\target [INFO] [INFO] --- resources:3.3.1:resources (default-resources) @ igbSwingExt --- [INFO] Copying 0 resource from src\main\java to target\classes [INFO] skip non existing resourceDirectory C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\igb-swing-ext\src\main\resources [INFO] [INFO] --- compiler:3.11.0:compile (default-compile) @ igbSwingExt --- [INFO] Changes detected - recompiling the module! :dependency [INFO] Compiling 41 source files with javac [debug target 21] to target\classes [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/core/igb-swing-ext/src/main/java/com/affymetrix/igb/swing/JRPTable.java: Some input files use unchecked or unsafe operations. [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/core/igb-swing-ext/src/main/java/com/affymetrix/igb/swing/JRPTable.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- bundle:5.1.9:manifest (bundle-manifest) @ igbSwingExt --- [INFO] No MANIFEST.MF file found, generating manifest. [WARNING] Manifest org.lorainelab.igb:igbSwingExt:bundle:10.0.0 : Service-Component is normally generated by bnd. If you want to point at specific component XML files (wildcards are allowed, see findEntries) make sure it ends in '.xml'. Found * [INFO] Writing manifest: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\igb-swing-ext\target\classes\META-INF\MANIFEST.MF [INFO] [INFO] --- resources:3.3.1:testResources (default-testResources) @ igbSwingExt --- [INFO] skip non existing resourceDirectory C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\igb-swing-ext\src\test\resources [INFO] [INFO] --- compiler:3.11.0:testCompile (default-testCompile) @ igbSwingExt --- [INFO] No sources to compile [INFO] [INFO] --- surefire:3.1.2:test (default-test) @ igbSwingExt --- [INFO] Tests are skipped. [INFO] [INFO] --- bundle:5.1.9:bundle (default-bundle) @ igbSwingExt --- [WARNING] Bundle org.lorainelab.igb:igbSwingExt:bundle:10.0.0 : Service-Component is normally generated by bnd. If you want to point at specific component XML files (wildcards are allowed, see findEntries) make sure it ends in '.xml'. Found * [INFO] Building bundle: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\igb-swing-ext\target\igbSwingExt-10.0.0.jar [INFO] Writing manifest: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\igb-swing-ext\target\classes\META-INF\MANIFEST.MF [INFO] [INFO] --- install:3.1.1:install (default-install) @ igbSwingExt --- [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\igb-swing-ext\pom.xml to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\igbSwingExt\10.0.0\igbSwingExt-10.0.0.pom [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\igb-swing-ext\target\igbSwingExt-10.0.0.jar to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\igbSwingExt\10.0.0\igbSwingExt-10.0.0.jar [INFO] [INFO] --- bundle:5.1.9:install (default-install) @ igbSwingExt --- [INFO] Installing org/lorainelab/igb/igbSwingExt/10.0.0/igbSwingExt-10.0.0.jar [INFO] Writing OBR metadata [INFO] [INFO] --- dependency:3.5.0:copy (copy) @ igbSwingExt --- [INFO] Configured Artifact: org.lorainelab.igb:igbSwingExt:10.0.0:jar [INFO] Copying igbSwingExt-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\igbSwingExt-10.0.0.jar [INFO] [INFO] -------------< org.lorainelab.igb:igb-genoviz-extensions >-------------- [INFO] Building Core - Genoviz Extensions 10.0.0 [10/56] [INFO] from core\igb-genoviz-ext\pom.xml [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- clean:3.3.2:clean (default-clean) @ igb-genoviz-extensions --- [INFO] Deleting C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\igb-genoviz-ext\target [INFO] [INFO] --- resources:3.3.1:resources (default-resources) @ igb-genoviz-extensions --- [INFO] Copying 0 resource from src\main\java to target\classes [INFO] Copying 1 resource from src\main\resources to target\classes [INFO] [INFO] --- compiler:3.11.0:compile (default-compile) @ igb-genoviz-extensions --- [INFO] Changes detected - recompiling the module! :dependency [INFO] Compiling 10 source files with javac [debug target 21] to target\classes [INFO] [INFO] --- resources:3.3.1:testResources (default-testResources) @ igb-genoviz-extensions --- [INFO] skip non existing resourceDirectory C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\igb-genoviz-ext\src\test\resources [INFO] [INFO] --- compiler:3.11.0:testCompile (default-testCompile) @ igb-genoviz-extensions --- [INFO] No sources to compile [INFO] [INFO] --- surefire:3.1.2:test (default-test) @ igb-genoviz-extensions --- [INFO] Tests are skipped. [INFO] [INFO] --- bundle:5.1.9:bundle (default-bundle) @ igb-genoviz-extensions --- [WARNING] Bundle org.lorainelab.igb:igb-genoviz-extensions:bundle:10.0.0 : Service-Component is normally generated by bnd. If you want to point at specific component XML files (wildcards are allowed, see findEntries) make sure it ends in '.xml'. Found * [INFO] Building bundle: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\igb-genoviz-ext\target\igb-genoviz-extensions-10.0.0.jar [INFO] Writing manifest: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\igb-genoviz-ext\target\classes\META-INF\MANIFEST.MF [INFO] [INFO] --- install:3.1.1:install (default-install) @ igb-genoviz-extensions --- [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\igb-genoviz-ext\pom.xml to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\igb-genoviz-extensions\10.0.0\igb-genoviz-extensions-10.0.0.pom [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\igb-genoviz-ext\target\igb-genoviz-extensions-10.0.0.jar to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\igb-genoviz-extensions\10.0.0\igb-genoviz-extensions-10.0.0.jar [INFO] [INFO] --- bundle:5.1.9:install (default-install) @ igb-genoviz-extensions --- [INFO] Installing org/lorainelab/igb/igb-genoviz-extensions/10.0.0/igb-genoviz-extensions-10.0.0.jar [INFO] Writing OBR metadata [INFO] [INFO] --- dependency:3.5.0:copy (copy) @ igb-genoviz-extensions --- [INFO] Configured Artifact: org.lorainelab.igb:igb-genoviz-extensions:10.0.0:jar [INFO] Copying igb-genoviz-extensions-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\igb-genoviz-extensions-10.0.0.jar [INFO] [INFO] ------------------< org.lorainelab.igb:igb-services >------------------- [INFO] Building Core - IGB Services API 10.0.0 [11/56] [INFO] from core\igb-services-api\pom.xml [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- clean:3.3.2:clean (default-clean) @ igb-services --- [INFO] Deleting C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\igb-services-api\target [INFO] [INFO] --- resources:3.3.1:resources (default-resources) @ igb-services --- [INFO] Copying 0 resource from src\main\java to target\classes [INFO] Copying 1 resource from src\main\resources to target\classes [INFO] [INFO] --- compiler:3.11.0:compile (default-compile) @ igb-services --- [INFO] Changes detected - recompiling the module! :dependency [INFO] Compiling 20 source files with javac [debug target 21] to target\classes [INFO] [INFO] --- resources:3.3.1:testResources (default-testResources) @ igb-services --- [INFO] Copying 1 resource from src\test\resources to target\test-classes [INFO] [INFO] --- compiler:3.11.0:testCompile (default-testCompile) @ igb-services --- [INFO] No sources to compile [INFO] [INFO] --- surefire:3.1.2:test (default-test) @ igb-services --- [INFO] Tests are skipped. [INFO] [INFO] --- bundle:5.1.9:bundle (default-bundle) @ igb-services --- [WARNING] Bundle org.lorainelab.igb:igb-services:bundle:10.0.0 : Service-Component is normally generated by bnd. If you want to point at specific component XML files (wildcards are allowed, see findEntries) make sure it ends in '.xml'. Found * [INFO] Building bundle: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\igb-services-api\target\igb-services-10.0.0.jar [INFO] Writing manifest: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\igb-services-api\target\classes\META-INF\MANIFEST.MF [INFO] [INFO] --- install:3.1.1:install (default-install) @ igb-services --- [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\igb-services-api\pom.xml to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\igb-services\10.0.0\igb-services-10.0.0.pom [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\igb-services-api\target\igb-services-10.0.0.jar to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\igb-services\10.0.0\igb-services-10.0.0.jar [INFO] [INFO] --- bundle:5.1.9:install (default-install) @ igb-services --- [INFO] Installing org/lorainelab/igb/igb-services/10.0.0/igb-services-10.0.0.jar [INFO] Writing OBR metadata [INFO] [INFO] --- dependency:3.5.0:copy (copy) @ igb-services --- [INFO] Configured Artifact: org.lorainelab.igb:igb-services:10.0.0:jar [INFO] Copying igb-services-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\igb-services-10.0.0.jar [INFO] [INFO] ------------------< org.lorainelab.igb:frameManager >------------------- [INFO] Building Core - Frame Manager 10.0.0 [12/56] [INFO] from core\frameManager\pom.xml [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- clean:3.3.2:clean (default-clean) @ frameManager --- [INFO] Deleting C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\frameManager\target [INFO] [INFO] --- resources:3.3.1:resources (default-resources) @ frameManager --- [INFO] Copying 0 resource from src\main\java to target\classes [INFO] Copying 1 resource from src\main\resources to target\classes [INFO] [INFO] --- compiler:3.11.0:compile (default-compile) @ frameManager --- [INFO] Changes detected - recompiling the module! :dependency [INFO] Compiling 3 source files with javac [debug target 21] to target\classes [INFO] [INFO] --- resources:3.3.1:testResources (default-testResources) @ frameManager --- [INFO] skip non existing resourceDirectory C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\frameManager\src\test\resources [INFO] [INFO] --- compiler:3.11.0:testCompile (default-testCompile) @ frameManager --- [INFO] No sources to compile [INFO] [INFO] --- surefire:3.1.2:test (default-test) @ frameManager --- [INFO] Tests are skipped. [INFO] [INFO] --- bundle:5.1.9:bundle (default-bundle) @ frameManager --- [WARNING] Bundle org.lorainelab.igb:frameManager:bundle:10.0.0 : Service-Component is normally generated by bnd. If you want to point at specific component XML files (wildcards are allowed, see findEntries) make sure it ends in '.xml'. Found * [INFO] Building bundle: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\frameManager\target\frameManager-10.0.0.jar [INFO] Writing manifest: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\frameManager\target\classes\META-INF\MANIFEST.MF [INFO] [INFO] --- install:3.1.1:install (default-install) @ frameManager --- [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\frameManager\pom.xml to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\frameManager\10.0.0\frameManager-10.0.0.pom [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\frameManager\target\frameManager-10.0.0.jar to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\frameManager\10.0.0\frameManager-10.0.0.jar [INFO] [INFO] --- bundle:5.1.9:install (default-install) @ frameManager --- [INFO] Installing org/lorainelab/igb/frameManager/10.0.0/frameManager-10.0.0.jar [INFO] Writing OBR metadata [INFO] [INFO] --- dependency:3.5.0:copy (copy) @ frameManager --- [INFO] Configured Artifact: org.lorainelab.igb:frameManager:10.0.0:jar [INFO] Copying frameManager-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\frameManager-10.0.0.jar [INFO] [INFO] -----------------< org.lorainelab.igb:window-service >------------------ [INFO] Building Core - Window Service 10.0.0 [13/56] [INFO] from core\window-service\pom.xml [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- clean:3.3.2:clean (default-clean) @ window-service --- [INFO] Deleting C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\window-service\target [INFO] [INFO] --- resources:3.3.1:resources (default-resources) @ window-service --- [INFO] Copying 0 resource from src\main\java to target\classes [INFO] Copying 2 resources from src\main\resources to target\classes [INFO] [INFO] --- compiler:3.11.0:compile (default-compile) @ window-service --- [INFO] Changes detected - recompiling the module! :dependency [INFO] Compiling 13 source files with javac [debug target 21] to target\classes [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/core/window-service/src/main/java/com/affymetrix/igb/window/service/def/WindowServiceDefaultImpl.java: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\window-service\src\main\java\com\affymetrix\igb\window\service\def\WindowServiceDefaultImpl.java uses or overrides a deprecated API. [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/core/window-service/src/main/java/com/affymetrix/igb/window/service/def/WindowServiceDefaultImpl.java: Recompile with -Xlint:deprecation for details. [INFO] [INFO] --- resources:3.3.1:testResources (default-testResources) @ window-service --- [INFO] Copying 1 resource from src\test\resources to target\test-classes [INFO] [INFO] --- compiler:3.11.0:testCompile (default-testCompile) @ window-service --- [INFO] No sources to compile [INFO] [INFO] --- surefire:3.1.2:test (default-test) @ window-service --- [INFO] Tests are skipped. [INFO] [INFO] --- bundle:5.1.9:bundle (default-bundle) @ window-service --- [WARNING] Bundle org.lorainelab.igb:window-service:bundle:10.0.0 : Service-Component is normally generated by bnd. If you want to point at specific component XML files (wildcards are allowed, see findEntries) make sure it ends in '.xml'. Found * [INFO] Building bundle: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\window-service\target\window-service-10.0.0.jar [INFO] Writing manifest: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\window-service\target\classes\META-INF\MANIFEST.MF [INFO] [INFO] --- install:3.1.1:install (default-install) @ window-service --- [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\window-service\pom.xml to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\window-service\10.0.0\window-service-10.0.0.pom [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\window-service\target\window-service-10.0.0.jar to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\window-service\10.0.0\window-service-10.0.0.jar [INFO] [INFO] --- bundle:5.1.9:install (default-install) @ window-service --- [INFO] Installing org/lorainelab/igb/window-service/10.0.0/window-service-10.0.0.jar [INFO] Writing OBR metadata [INFO] [INFO] --- dependency:3.5.0:copy (copy) @ window-service --- [INFO] Configured Artifact: org.lorainelab.igb:window-service:10.0.0:jar [INFO] Copying window-service-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\window-service-10.0.0.jar [INFO] [INFO] -----------------< org.lorainelab.igb:igb-javafx-util >----------------- [INFO] Building Core - JavaFX Utilities 10.0.0 [14/56] [INFO] from core\igb-javafx-util\pom.xml [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- clean:3.3.2:clean (default-clean) @ igb-javafx-util --- [INFO] Deleting C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\igb-javafx-util\target [INFO] [INFO] --- resources:3.3.1:resources (default-resources) @ igb-javafx-util --- [INFO] Copying 0 resource from src\main\java to target\classes [INFO] skip non existing resourceDirectory C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\igb-javafx-util\src\main\resources [INFO] [INFO] --- compiler:3.11.0:compile (default-compile) @ igb-javafx-util --- [INFO] Changes detected - recompiling the module! :source [INFO] Compiling 2 source files with javac [debug target 21] to target\classes [INFO] [INFO] --- resources:3.3.1:testResources (default-testResources) @ igb-javafx-util --- [INFO] skip non existing resourceDirectory C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\igb-javafx-util\src\test\resources [INFO] [INFO] --- compiler:3.11.0:testCompile (default-testCompile) @ igb-javafx-util --- [INFO] No sources to compile [INFO] [INFO] --- surefire:3.1.2:test (default-test) @ igb-javafx-util --- [INFO] Tests are skipped. [INFO] [INFO] --- bundle:5.1.9:bundle (default-bundle) @ igb-javafx-util --- [WARNING] Bundle org.lorainelab.igb:igb-javafx-util:bundle:10.0.0 : Service-Component is normally generated by bnd. If you want to point at specific component XML files (wildcards are allowed, see findEntries) make sure it ends in '.xml'. Found * [INFO] Building bundle: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\igb-javafx-util\target\igb-javafx-util-10.0.0.jar [INFO] Writing manifest: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\igb-javafx-util\target\classes\META-INF\MANIFEST.MF [INFO] [INFO] --- install:3.1.1:install (default-install) @ igb-javafx-util --- [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\igb-javafx-util\pom.xml to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\igb-javafx-util\10.0.0\igb-javafx-util-10.0.0.pom [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\igb-javafx-util\target\igb-javafx-util-10.0.0.jar to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\igb-javafx-util\10.0.0\igb-javafx-util-10.0.0.jar [INFO] [INFO] --- bundle:5.1.9:install (default-install) @ igb-javafx-util --- [INFO] Installing org/lorainelab/igb/igb-javafx-util/10.0.0/igb-javafx-util-10.0.0.jar [INFO] Writing OBR metadata [INFO] [INFO] --- dependency:3.5.0:copy (copy) @ igb-javafx-util --- [INFO] Configured Artifact: org.lorainelab.igb:igb-javafx-util:10.0.0:jar [INFO] Copying igb-javafx-util-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\igb-javafx-util-10.0.0.jar [INFO] [INFO] -----------< org.lorainelab.igb:org.lorainelab.igb.menu.api >----------- [INFO] Building Core - Menu API 10.0.0 [15/56] [INFO] from core\menu-api\pom.xml [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- clean:3.3.2:clean (default-clean) @ org.lorainelab.igb.menu.api --- [INFO] Deleting C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\menu-api\target [INFO] [INFO] --- resources:3.3.1:resources (default-resources) @ org.lorainelab.igb.menu.api --- [INFO] Copying 0 resource from src\main\java to target\classes [INFO] skip non existing resourceDirectory C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\menu-api\src\main\resources [INFO] [INFO] --- compiler:3.11.0:compile (default-compile) @ org.lorainelab.igb.menu.api --- [INFO] Changes detected - recompiling the module! :dependency [INFO] Compiling 13 source files with javac [debug target 21] to target\classes [INFO] [INFO] --- resources:3.3.1:testResources (default-testResources) @ org.lorainelab.igb.menu.api --- [INFO] skip non existing resourceDirectory C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\menu-api\src\test\resources [INFO] [INFO] --- compiler:3.11.0:testCompile (default-testCompile) @ org.lorainelab.igb.menu.api --- [INFO] No sources to compile [INFO] [INFO] --- surefire:3.1.2:test (default-test) @ org.lorainelab.igb.menu.api --- [INFO] Tests are skipped. [INFO] [INFO] --- bundle:5.1.9:bundle (default-bundle) @ org.lorainelab.igb.menu.api --- [WARNING] Bundle org.lorainelab.igb:org.lorainelab.igb.menu.api:bundle:10.0.0 : Service-Component is normally generated by bnd. If you want to point at specific component XML files (wildcards are allowed, see findEntries) make sure it ends in '.xml'. Found * [INFO] Building bundle: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\menu-api\target\org.lorainelab.igb.menu.api-10.0.0.jar [INFO] Writing manifest: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\menu-api\target\classes\META-INF\MANIFEST.MF [INFO] [INFO] --- install:3.1.1:install (default-install) @ org.lorainelab.igb.menu.api --- [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\menu-api\pom.xml to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\org.lorainelab.igb.menu.api\10.0.0\org.lorainelab.igb.menu.api-10.0.0.pom [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\menu-api\target\org.lorainelab.igb.menu.api-10.0.0.jar to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\org.lorainelab.igb.menu.api\10.0.0\org.lorainelab.igb.menu.api-10.0.0.jar [INFO] [INFO] --- bundle:5.1.9:install (default-install) @ org.lorainelab.igb.menu.api --- [INFO] Installing org/lorainelab/igb/org.lorainelab.igb.menu.api/10.0.0/org.lorainelab.igb.menu.api-10.0.0.jar [INFO] Writing OBR metadata [INFO] [INFO] --- dependency:3.5.0:copy (copy) @ org.lorainelab.igb.menu.api --- [INFO] Configured Artifact: org.lorainelab.igb:org.lorainelab.igb.menu.api:10.0.0:jar [INFO] Copying org.lorainelab.igb.menu.api-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\org.lorainelab.igb.menu.api-10.0.0.jar [INFO] [INFO] --------------< org.lorainelab.igb:context-menu-service >--------------- [INFO] Building Core - Context Menu Service 10.0.0 [16/56] [INFO] from core\context-menu-service\pom.xml [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- clean:3.3.2:clean (default-clean) @ context-menu-service --- [INFO] Deleting C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\context-menu-service\target [INFO] [INFO] --- resources:3.3.1:resources (default-resources) @ context-menu-service --- [INFO] Copying 0 resource from src\main\java to target\classes [INFO] skip non existing resourceDirectory C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\context-menu-service\src\main\resources [INFO] [INFO] --- compiler:3.11.0:compile (default-compile) @ context-menu-service --- [INFO] Changes detected - recompiling the module! :dependency [INFO] Compiling 2 source files with javac [debug target 21] to target\classes [INFO] [INFO] --- resources:3.3.1:testResources (default-testResources) @ context-menu-service --- [INFO] skip non existing resourceDirectory C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\context-menu-service\src\test\resources [INFO] [INFO] --- compiler:3.11.0:testCompile (default-testCompile) @ context-menu-service --- [INFO] No sources to compile [INFO] [INFO] --- surefire:3.1.2:test (default-test) @ context-menu-service --- [INFO] Tests are skipped. [INFO] [INFO] --- bundle:5.1.9:bundle (default-bundle) @ context-menu-service --- [WARNING] Bundle org.lorainelab.igb:context-menu-service:bundle:10.0.0 : Service-Component is normally generated by bnd. If you want to point at specific component XML files (wildcards are allowed, see findEntries) make sure it ends in '.xml'. Found * [INFO] Building bundle: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\context-menu-service\target\context-menu-service-10.0.0.jar [INFO] Writing manifest: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\context-menu-service\target\classes\META-INF\MANIFEST.MF [INFO] [INFO] --- install:3.1.1:install (default-install) @ context-menu-service --- [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\context-menu-service\pom.xml to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\context-menu-service\10.0.0\context-menu-service-10.0.0.pom [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\context-menu-service\target\context-menu-service-10.0.0.jar to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\context-menu-service\10.0.0\context-menu-service-10.0.0.jar [INFO] [INFO] --- bundle:5.1.9:install (default-install) @ context-menu-service --- [INFO] Installing org/lorainelab/igb/context-menu-service/10.0.0/context-menu-service-10.0.0.jar [INFO] Writing OBR metadata [INFO] [INFO] --- dependency:3.5.0:copy (copy) @ context-menu-service --- [INFO] Configured Artifact: org.lorainelab.igb:context-menu-service:10.0.0:jar [INFO] Copying context-menu-service-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\context-menu-service-10.0.0.jar [INFO] [INFO] -----------------------< org.lorainelab.igb:igb >----------------------- [INFO] Building Core - IGB 10.0.0 [17/56] [INFO] from core\igb\pom.xml [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- clean:3.3.2:clean (default-clean) @ igb --- [INFO] Deleting C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\igb\target [INFO] [INFO] --- git-commit-id:4.9.10:revision (default) @ igb --- [INFO] [INFO] --- resources:3.3.1:resources (default-resources) @ igb --- [INFO] Copying 12 resources from src\main\resources to target\classes [INFO] Copying 48 resources from src\main\resources to target\classes [INFO] [INFO] --- compiler:3.11.0:compile (default-compile) @ igb --- [INFO] Changes detected - recompiling the module! :dependency [INFO] Compiling 336 source files with javac [debug target 21] to target\classes [WARNING] unknown enum constant jakarta.xml.bind.annotation.XmlAccessType.FIELD reason: class file for jakarta.xml.bind.annotation.XmlAccessType not found [WARNING] unknown enum constant jakarta.xml.bind.annotation.XmlAccessType.FIELD [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/core/igb/src/main/java/com/affymetrix/igb/view/SeqMapViewMouseListener.java: Some input files use or override a deprecated API. [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/core/igb/src/main/java/com/affymetrix/igb/view/SeqMapViewMouseListener.java: Recompile with -Xlint:deprecation for details. [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/core/igb/src/main/java/com/affymetrix/igb/prefs/AnnotationLabelOptions.java: Some input files use unchecked or unsafe operations. [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/core/igb/src/main/java/com/affymetrix/igb/prefs/AnnotationLabelOptions.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- resources:3.3.1:testResources (default-testResources) @ igb --- [INFO] Copying 1 resource from src\test\resources to target\test-classes [INFO] [INFO] --- compiler:3.11.0:testCompile (default-testCompile) @ igb --- [INFO] Changes detected - recompiling the module! :dependency [INFO] Compiling 2 source files with javac [debug target 21] to target\test-classes [INFO] [INFO] --- surefire:3.1.2:test (default-test) @ igb --- [INFO] Tests are skipped. [INFO] [INFO] --- bundle:5.1.9:bundle (default-bundle) @ igb --- [WARNING] Bundle org.lorainelab.igb:igb:bundle:10.0.0 : Service-Component is normally generated by bnd. If you want to point at specific component XML files (wildcards are allowed, see findEntries) make sure it ends in '.xml'. Found * [WARNING] Bundle org.lorainelab.igb:igb:bundle:10.0.0 : Export com.affymetrix.igb.shared, has 2, private references [com.affymetrix.igb.action, com.affymetrix.igb.tiers] [WARNING] Bundle org.lorainelab.igb:igb:bundle:10.0.0 : Export com.affymetrix.igb.view.load, has 2, private references [com.affymetrix.igb.tiers, com.affymetrix.igb.view] [WARNING] Bundle org.lorainelab.igb:igb:bundle:10.0.0 : Export com.affymetrix.igb.view.factories, has 3, private references [com.affymetrix.igb.services.registry, com.affymetrix.igb.view, com.affymetrix.igb.view.layout] [WARNING] Bundle org.lorainelab.igb:igb:bundle:10.0.0 : Export com.affymetrix.igb.glyph, has 1, private references [com.affymetrix.igb.view] [INFO] Building bundle: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\igb\target\igb-10.0.0.jar [INFO] Writing manifest: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\igb\target\classes\META-INF\MANIFEST.MF [INFO] [INFO] --- install:3.1.1:install (default-install) @ igb --- [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\igb\pom.xml to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\igb\10.0.0\igb-10.0.0.pom [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\igb\target\igb-10.0.0.jar to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\igb\10.0.0\igb-10.0.0.jar [INFO] [INFO] --- bundle:5.1.9:install (default-install) @ igb --- [INFO] Installing org/lorainelab/igb/igb/10.0.0/igb-10.0.0.jar [INFO] Writing OBR metadata [INFO] [INFO] --- dependency:3.5.0:copy (copy) @ igb --- [INFO] Configured Artifact: org.lorainelab.igb:igb:10.0.0:jar [INFO] Copying igb-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\igb-10.0.0.jar [INFO] [INFO] ---------------< org.lorainelab.igb:shared-lib-wrapper >---------------- [INFO] Building Core - Bundle wrapper, deployer 10.0.0 [18/56] [INFO] from core\shared-lib-wrapper\pom.xml [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- clean:3.3.2:clean (default-clean) @ shared-lib-wrapper --- [INFO] Deleting C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\shared-lib-wrapper\target [INFO] Deleting C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles (includes = [shared-lib-wrapper-10.0.0.jar, guava*.jar, commons-lang3*.jar, commons-*.jar, genoviz*.jar, felix.jar, org.apache.felix*.jar, bigwig*.jar, jide-ultimate-jakarta*.jar], excludes = []) [INFO] [INFO] --- resources:3.3.1:resources (default-resources) @ shared-lib-wrapper --- [INFO] skip non existing resourceDirectory C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\shared-lib-wrapper\src\main\java [INFO] skip non existing resourceDirectory C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\shared-lib-wrapper\src\main\resources [INFO] [INFO] --- compiler:3.11.0:compile (default-compile) @ shared-lib-wrapper --- [INFO] No sources to compile [INFO] [INFO] --- resources:3.3.1:testResources (default-testResources) @ shared-lib-wrapper --- [INFO] skip non existing resourceDirectory C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\shared-lib-wrapper\src\test\resources [INFO] [INFO] --- compiler:3.11.0:testCompile (default-testCompile) @ shared-lib-wrapper --- [INFO] No sources to compile [INFO] [INFO] --- surefire:3.1.2:test (default-test) @ shared-lib-wrapper --- [INFO] Tests are skipped. [INFO] [INFO] --- bundle:5.1.9:bundle (default-bundle) @ shared-lib-wrapper --- [WARNING] Bundle org.lorainelab.igb:shared-lib-wrapper:bundle:10.0.0 : Split package, multiple jars provide the same package:org/hamcrest Use Import/Export Package directive -split-package:=(merge-first|merge-last|error|first) to get rid of this warning Package found in [Jar:junit, Jar:hamcrest-core] Class path [Jar:jflow, Jar:txw2, Jar:jdom, Jar:commons-net, Jar:image4j, Jar:colt, Jar:concurrent, Jar:freehep-graphicsio-svg, Jar:freehep-graphics2d, Jar:junit, Jar:hamcrest-core, Jar:freehep-graphicsio, Jar:freehep-io, Jar:freehep-graphicsio-tests, Jar:freehep-graphicsbase, Jar:swing-layout, Jar:swingx-all, Jar:miglayout-core, Jar:miglayout-swing, Jar:jgoogleanalytics, Jar:http-request, Jar:NanoHTTPD] [WARNING] Bundle org.lorainelab.igb:shared-lib-wrapper:bundle:10.0.0 : Split package, multiple jars provide the same package:org/hamcrest/core Use Import/Export Package directive -split-package:=(merge-first|merge-last|error|first) to get rid of this warning Package found in [Jar:junit, Jar:hamcrest-core] Class path [Jar:jflow, Jar:txw2, Jar:jdom, Jar:commons-net, Jar:image4j, Jar:colt, Jar:concurrent, Jar:freehep-graphicsio-svg, Jar:freehep-graphics2d, Jar:junit, Jar:hamcrest-core, Jar:freehep-graphicsio, Jar:freehep-io, Jar:freehep-graphicsio-tests, Jar:freehep-graphicsbase, Jar:swing-layout, Jar:swingx-all, Jar:miglayout-core, Jar:miglayout-swing, Jar:jgoogleanalytics, Jar:http-request, Jar:NanoHTTPD] [WARNING] Bundle org.lorainelab.igb:shared-lib-wrapper:bundle:10.0.0 : Split package, multiple jars provide the same package:org/hamcrest/internal Use Import/Export Package directive -split-package:=(merge-first|merge-last|error|first) to get rid of this warning Package found in [Jar:junit, Jar:hamcrest-core] Class path [Jar:jflow, Jar:txw2, Jar:jdom, Jar:commons-net, Jar:image4j, Jar:colt, Jar:concurrent, Jar:freehep-graphicsio-svg, Jar:freehep-graphics2d, Jar:junit, Jar:hamcrest-core, Jar:freehep-graphicsio, Jar:freehep-io, Jar:freehep-graphicsio-tests, Jar:freehep-graphicsbase, Jar:swing-layout, Jar:swingx-all, Jar:miglayout-core, Jar:miglayout-swing, Jar:jgoogleanalytics, Jar:http-request, Jar:NanoHTTPD] [WARNING] Bundle org.lorainelab.igb:shared-lib-wrapper:bundle:10.0.0 : Unused Export-Package instructions: [affymetrix.calvin.*, affymetrix.fusion.*, affymetrix.gcos.*, org.jdom.*, org.jdesktop.swingx.*, com.boxysystems.jgoogleanalytics.*] [WARNING] Bundle org.lorainelab.igb:shared-lib-wrapper:bundle:10.0.0 : Export cern.colt.matrix.doublealgo, has 3, private references [cern.jet.random.engine, hep.aida, hep.aida.bin] [WARNING] Bundle org.lorainelab.igb:shared-lib-wrapper:bundle:10.0.0 : Export org.freehep.graphicsbase.util, has 1, private references [junit.framework] [WARNING] Bundle org.lorainelab.igb:shared-lib-wrapper:bundle:10.0.0 : Export org.freehep.graphicsio.test, has 1, private references [junit.framework] [WARNING] Bundle org.lorainelab.igb:shared-lib-wrapper:bundle:10.0.0 : Export-Package duplicate package name (org.jdesktop.swingx) that uses the default version because no version is specified (10.0.0). Remove duplicate package or add an explicit version to it. [WARNING] Bundle org.lorainelab.igb:shared-lib-wrapper:bundle:10.0.0 : Export-Package duplicate package name (com.sun.xml.txw2) that uses the default version because no version is specified (10.0.0). Remove duplicate package or add an explicit version to it. [WARNING] Bundle org.lorainelab.igb:shared-lib-wrapper:bundle:10.0.0 : Export-Package duplicate package name (com.sun.xml.txw2.annotation) that uses the default version because no version is specified (10.0.0). Remove duplicate package or add an explicit version to it. [WARNING] Bundle org.lorainelab.igb:shared-lib-wrapper:bundle:10.0.0 : Export-Package duplicate package name (com.sun.xml.txw2.output) that uses the default version because no version is specified (10.0.0). Remove duplicate package or add an explicit version to it. [INFO] Building bundle: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\shared-lib-wrapper\target\shared-lib-wrapper-10.0.0.jar [INFO] Writing manifest: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\shared-lib-wrapper\target\classes\META-INF\MANIFEST.MF [INFO] [INFO] --- install:3.1.1:install (default-install) @ shared-lib-wrapper --- [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\shared-lib-wrapper\pom.xml to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\shared-lib-wrapper\10.0.0\shared-lib-wrapper-10.0.0.pom [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\shared-lib-wrapper\target\shared-lib-wrapper-10.0.0.jar to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\shared-lib-wrapper\10.0.0\shared-lib-wrapper-10.0.0.jar [INFO] [INFO] --- bundle:5.1.9:install (default-install) @ shared-lib-wrapper --- [INFO] Installing org/lorainelab/igb/shared-lib-wrapper/10.0.0/shared-lib-wrapper-10.0.0.jar [INFO] Writing OBR metadata [INFO] [INFO] --- dependency:3.5.0:copy (copy) @ shared-lib-wrapper --- [INFO] Configured Artifact: com.google.guava:guava:32.1.1-jre:jar [INFO] Configured Artifact: com.google.guava:failureaccess:1.0.1:jar [INFO] Configured Artifact: org.apache.commons:commons-lang3:3.12.0:jar [INFO] Configured Artifact: org.apache.commons:commons-csv:1.10.0:jar [INFO] Configured Artifact: commons-io:commons-io:2.11.0:jar [INFO] Configured Artifact: com.affymetrix:genoviz:1.1.9:jar [INFO] Configured Artifact: org.lorainelab.igb:shared-lib-wrapper:10.0.0:jar [INFO] Configured Artifact: org.apache.felix:org.apache.felix.main:7.0.5:jar [INFO] Configured Artifact: org.apache.felix:org.apache.felix.scr:2.2.6:jar [INFO] Configured Artifact: org.osgi:org.osgi.service.log:1.5.0:jar [INFO] Configured Artifact: org.osgi:org.osgi.service.component:1.5.1:jar [INFO] Configured Artifact: org.osgi:org.osgi.service.component.annotations:1.5.1:jar [INFO] Configured Artifact: org.apache.felix:org.apache.felix.bundlerepository:2.0.10:jar [INFO] Configured Artifact: org.broad.igv:bigwig:2.0.1:jar [INFO] Configured Artifact: org.apache.commons:commons-compress:1.23.0:jar [INFO] Configured Artifact: commons-codec:commons-codec:1.15:jar [INFO] Configured Artifact: commons-pool:commons-pool:1.6:jar [INFO] Configured Artifact: commons-logging:commons-logging:1.2:jar [INFO] Configured Artifact: org.apache.commons:commons-jexl:2.1.1:jar [INFO] Configured Artifact: com.sun.istack:istack-commons-runtime:3.0.12:jar [INFO] Configured Artifact: com.jidesoft:jide-ultimate-jakarta:3.5.15:jar [WARNING] The POM for com.jidesoft:jide-ultimate-jakarta:jar:3.5.15 is missing, no dependency information available [INFO] Configured Artifact: com.google.code.gson:gson:2.10.1:jar [INFO] Configured Artifact: org.slf4j:slf4j-api:1.7.36:jar [INFO] Configured Artifact: ch.qos.logback:logback-core:1.2.12:jar [INFO] Configured Artifact: ch.qos.logback:logback-classic:1.2.12:jar [INFO] Configured Artifact: htsjdk-igb:htsjdk-igb:3.0.5:jar [INFO] Configured Artifact: org.apache.felix:org.apache.felix.http.base:5.1.2:jar [INFO] Configured Artifact: org.apache.felix:org.apache.felix.configadmin:1.9.26:jar [INFO] Configured Artifact: org.apache.felix:org.apache.felix.fileinstall:3.7.4:jar [INFO] Configured Artifact: com.github.kevinsawicki:http-request:6.0:jar [INFO] Configured Artifact: org.apache.felix:org.apache.felix.http.servlet-api:?:jar [INFO] Configured Artifact: org.apache.felix:org.apache.felix.http.jetty:5.1.4:jar [INFO] Configured Artifact: org.apache.felix:org.apache.felix.webconsole:4.8.8:jar [INFO] Configured Artifact: commons-fileupload:commons-fileupload:1.5:jar [INFO] Configured Artifact: org.apache.felix:org.apache.felix.eventadmin:1.6.4:jar [INFO] Copying guava-32.1.1-jre.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\guava-32.1.1-jre.jar [INFO] Copying failureaccess-1.0.1.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\failureaccess-1.0.1.jar [INFO] Copying commons-lang3-3.12.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\commons-lang3-3.12.0.jar [INFO] Copying commons-csv-1.10.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\commons-csv-1.10.0.jar [INFO] Copying commons-io-2.11.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\commons-io-2.11.0.jar [INFO] Copying genoviz-1.1.9.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\genoviz-1.1.9.jar [INFO] Copying shared-lib-wrapper-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\shared-lib-wrapper-10.0.0.jar [INFO] Copying org.apache.felix.main-7.0.5.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\felix.jar [INFO] Copying org.apache.felix.scr-2.2.6.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\org.apache.felix.scr-2.2.6.jar [INFO] Copying org.osgi.service.log-1.5.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\org.osgi.service.log-1.5.0.jar [INFO] Copying org.osgi.service.component-1.5.1.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\org.osgi.service.component-1.5.1.jar [INFO] Copying org.osgi.service.component.annotations-1.5.1.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\org.osgi.service.component.annotations-1.5.1.jar [INFO] Copying org.apache.felix.bundlerepository-2.0.10.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\org.apache.felix.bundlerepository-2.0.10.jar [INFO] Copying bigwig-2.0.1.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\bigwig-2.0.1.jar [INFO] Copying commons-compress-1.23.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\commons-compress-1.23.0.jar [INFO] Copying commons-codec-1.15.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\commons-codec-1.15.jar [INFO] Copying commons-pool-1.6.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\commons-pool-1.6.jar [INFO] Copying commons-logging-1.2.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\commons-logging-1.2.jar [INFO] Copying commons-jexl-2.1.1.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\commons-jexl-2.1.1.jar [INFO] Copying istack-commons-runtime-3.0.12.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\istack-commons-runtime-3.0.12.jar [INFO] Copying jide-ultimate-jakarta-3.5.15.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\jide-ultimate-jakarta-3.5.15.jar [INFO] Copying gson-2.10.1.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\gson-2.10.1.jar [INFO] Copying slf4j-api-1.7.36.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\slf4j-api-1.7.36.jar [INFO] Copying logback-core-1.2.12.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\logback-core-1.2.12.jar [INFO] Copying logback-classic-1.2.12.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\logback-classic-1.2.12.jar [INFO] Copying htsjdk-igb-3.0.5.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\htsjdk-igb-3.0.5.jar [INFO] Copying org.apache.felix.http.base-5.1.2.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\org.apache.felix.http.base-5.1.2.jar [INFO] Copying org.apache.felix.configadmin-1.9.26.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\org.apache.felix.configadmin-1.9.26.jar [INFO] Copying org.apache.felix.fileinstall-3.7.4.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\org.apache.felix.fileinstall-3.7.4.jar [INFO] Copying http-request-6.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\http-request-6.0.jar [INFO] Copying org.apache.felix.http.servlet-api-2.1.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\org.apache.felix.http.servlet-api-2.1.0.jar [INFO] Copying org.apache.felix.http.jetty-5.1.4.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\org.apache.felix.http.jetty-5.1.4.jar [INFO] Copying org.apache.felix.webconsole-4.8.8.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\org.apache.felix.webconsole-4.8.8.jar [INFO] Copying commons-fileupload-1.5.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\commons-fileupload-1.5.jar [INFO] Copying org.apache.felix.eventadmin-1.6.4.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\org.apache.felix.eventadmin-1.6.4.jar [INFO] [INFO] -----------------< org.lorainelab.igb:logging-config >------------------ [INFO] Building Core - Logging Config 10.0.0 [19/56] [INFO] from core\logging-config\pom.xml [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- clean:3.3.2:clean (default-clean) @ logging-config --- [INFO] Deleting C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\logging-config\target [INFO] [INFO] --- resources:3.3.1:resources (default-resources) @ logging-config --- [INFO] skip non existing resourceDirectory C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\logging-config\src\main\java [INFO] Copying 1 resource from src\main\resources to target\classes [INFO] [INFO] --- compiler:3.11.0:compile (default-compile) @ logging-config --- [INFO] No sources to compile [INFO] [INFO] --- resources:3.3.1:testResources (default-testResources) @ logging-config --- [INFO] skip non existing resourceDirectory C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\logging-config\src\test\resources [INFO] [INFO] --- compiler:3.11.0:testCompile (default-testCompile) @ logging-config --- [INFO] No sources to compile [INFO] [INFO] --- surefire:3.1.2:test (default-test) @ logging-config --- [INFO] Tests are skipped. [INFO] [INFO] --- bundle:5.1.9:bundle (default-bundle) @ logging-config --- [WARNING] Bundle org.lorainelab.igb:logging-config:bundle:10.0.0 : Host ch.qos.logback.classic= for this fragment/require bundle cannot be found on the classpath [INFO] Building bundle: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\logging-config\target\logging-config-10.0.0.jar [INFO] Writing manifest: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\logging-config\target\classes\META-INF\MANIFEST.MF [INFO] [INFO] --- install:3.1.1:install (default-install) @ logging-config --- [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\logging-config\pom.xml to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\logging-config\10.0.0\logging-config-10.0.0.pom [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\logging-config\target\logging-config-10.0.0.jar to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\logging-config\10.0.0\logging-config-10.0.0.jar [INFO] [INFO] --- bundle:5.1.9:install (default-install) @ logging-config --- [INFO] Installing org/lorainelab/igb/logging-config/10.0.0/logging-config-10.0.0.jar [INFO] Writing OBR metadata [INFO] [INFO] --- dependency:3.5.0:copy (copy) @ logging-config --- [INFO] Configured Artifact: org.lorainelab.igb:logging-config:10.0.0:jar [INFO] Copying logging-config-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\logging-config-10.0.0.jar [INFO] [INFO] --------------------< org.lorainelab.igb:weblinks >--------------------- [INFO] Building Core - Web Links 10.0.0 [20/56] [INFO] from core\weblinks\pom.xml [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- clean:3.3.2:clean (default-clean) @ weblinks --- [INFO] Deleting C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\weblinks\target [INFO] Deleting C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\dynamic (includes = [weblinks-10.0.0.jar], excludes = []) [INFO] [INFO] --- resources:3.3.1:resources (default-resources) @ weblinks --- [INFO] Copying 0 resource from src\main\java to target\classes [INFO] Copying 5 resources from src\main\resources to target\classes [INFO] [INFO] --- compiler:3.11.0:compile (default-compile) @ weblinks --- [INFO] Changes detected - recompiling the module! :dependency [INFO] Compiling 10 source files with javac [debug target 21] to target\classes [WARNING] unknown enum constant jakarta.xml.bind.annotation.XmlAccessType.FIELD reason: class file for jakarta.xml.bind.annotation.XmlAccessType not found [WARNING] unknown enum constant jakarta.xml.bind.annotation.XmlAccessType.FIELD [INFO] [INFO] --- resources:3.3.1:testResources (default-testResources) @ weblinks --- [INFO] skip non existing resourceDirectory C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\weblinks\src\test\resources [INFO] [INFO] --- compiler:3.11.0:testCompile (default-testCompile) @ weblinks --- [INFO] No sources to compile [INFO] [INFO] --- surefire:3.1.2:test (default-test) @ weblinks --- [INFO] Tests are skipped. [INFO] [INFO] --- bundle:5.1.9:bundle (default-bundle) @ weblinks --- [WARNING] Bundle org.lorainelab.igb:weblinks:bundle:10.0.0 : Service-Component is normally generated by bnd. If you want to point at specific component XML files (wildcards are allowed, see findEntries) make sure it ends in '.xml'. Found * [INFO] Building bundle: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\weblinks\target\weblinks-10.0.0.jar [INFO] Writing manifest: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\weblinks\target\classes\META-INF\MANIFEST.MF [INFO] [INFO] --- install:3.1.1:install (default-install) @ weblinks --- [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\weblinks\pom.xml to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\weblinks\10.0.0\weblinks-10.0.0.pom [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\weblinks\target\weblinks-10.0.0.jar to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\weblinks\10.0.0\weblinks-10.0.0.jar [INFO] [INFO] --- bundle:5.1.9:install (default-install) @ weblinks --- [INFO] Installing org/lorainelab/igb/weblinks/10.0.0/weblinks-10.0.0.jar [INFO] Writing OBR metadata [INFO] [INFO] --- dependency:3.5.0:copy (copy) @ weblinks --- [INFO] Configured Artifact: org.lorainelab.igb:weblinks:10.0.0:jar [INFO] Copying weblinks-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\dynamic\weblinks-10.0.0.jar [INFO] [INFO] ----------------------< org.lorainelab.igb:cache >---------------------- [INFO] Building Plugin - Data caching GUI 10.0.0 [21/56] [INFO] from plugins\cache\pom.xml [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- clean:3.3.2:clean (default-clean) @ cache --- [INFO] Deleting C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\cache\target [INFO] Deleting C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\dynamic (includes = [cache-10.0.0.jar], excludes = []) [INFO] [INFO] --- resources:3.3.1:resources (default-resources) @ cache --- [INFO] Copying 0 resource from src\main\java to target\classes [INFO] skip non existing resourceDirectory C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\cache\src\main\resources [INFO] [INFO] --- compiler:3.11.0:compile (default-compile) @ cache --- [INFO] Changes detected - recompiling the module! :dependency [INFO] Compiling 3 source files with javac [debug target 1.8] to target\classes [WARNING] bootstrap class path not set in conjunction with -source 8 [WARNING] source value 8 is obsolete and will be removed in a future release [WARNING] target value 8 is obsolete and will be removed in a future release [WARNING] To suppress warnings about obsolete options, use -Xlint:-options. [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/plugins/cache/src/main/java/org/lorainelab/igb/cache/disk/RemoteFileDiskCacheService.java: Some input files use or override a deprecated API. [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/plugins/cache/src/main/java/org/lorainelab/igb/cache/disk/RemoteFileDiskCacheService.java: Recompile with -Xlint:deprecation for details. [INFO] [INFO] --- resources:3.3.1:testResources (default-testResources) @ cache --- [INFO] Copying 1 resource from src\test\resources to target\test-classes [INFO] [INFO] --- compiler:3.11.0:testCompile (default-testCompile) @ cache --- [INFO] Changes detected - recompiling the module! :dependency [INFO] Compiling 1 source file with javac [debug target 1.8] to target\test-classes [WARNING] bootstrap class path not set in conjunction with -source 8 [WARNING] source value 8 is obsolete and will be removed in a future release [WARNING] target value 8 is obsolete and will be removed in a future release [WARNING] To suppress warnings about obsolete options, use -Xlint:-options. [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/plugins/cache/src/test/java/com/lorainelab/cache/disk/RemoteFileCacheServiceTest.java: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\cache\src\test\java\com\lorainelab\cache\disk\RemoteFileCacheServiceTest.java uses or overrides a deprecated API. [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/plugins/cache/src/test/java/com/lorainelab/cache/disk/RemoteFileCacheServiceTest.java: Recompile with -Xlint:deprecation for details. [INFO] [INFO] --- surefire:3.1.2:test (default-test) @ cache --- [INFO] Tests are skipped. [INFO] [INFO] --- bundle:5.1.9:bundle (default-bundle) @ cache --- [WARNING] Bundle org.lorainelab.igb:cache:bundle:10.0.0 : Service-Component is normally generated by bnd. If you want to point at specific component XML files (wildcards are allowed, see findEntries) make sure it ends in '.xml'. Found * [INFO] Building bundle: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\cache\target\cache-10.0.0.jar [INFO] Writing manifest: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\cache\target\classes\META-INF\MANIFEST.MF [INFO] [INFO] --- install:3.1.1:install (default-install) @ cache --- [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\cache\pom.xml to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\cache\10.0.0\cache-10.0.0.pom [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\cache\target\cache-10.0.0.jar to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\cache\10.0.0\cache-10.0.0.jar [INFO] [INFO] --- bundle:5.1.9:install (default-install) @ cache --- [INFO] Installing org/lorainelab/igb/cache/10.0.0/cache-10.0.0.jar [INFO] Writing OBR metadata [INFO] [INFO] --- dependency:3.5.0:copy (copy) @ cache --- [INFO] Configured Artifact: org.lorainelab.igb:cache:10.0.0:jar [INFO] Copying cache-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\dynamic\cache-10.0.0.jar [INFO] [INFO] --------------------< org.lorainelab.igb:quickload >-------------------- [INFO] Building Core - Quickload (data source) 10.0.0 [22/56] [INFO] from core\quickload\pom.xml [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- clean:3.3.2:clean (default-clean) @ quickload --- [INFO] Deleting C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\quickload\target [INFO] Deleting C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\dynamic (includes = [quickload-10.0.0.jar], excludes = []) [INFO] [INFO] --- resources:3.3.1:resources (default-resources) @ quickload --- [INFO] Copying 0 resource from src\main\java to target\classes [INFO] Copying 1 resource from src\main\resources to target\classes [INFO] [INFO] --- compiler:3.11.0:compile (default-compile) @ quickload --- [INFO] Changes detected - recompiling the module! :dependency [INFO] Compiling 7 source files with javac [debug target 21] to target\classes [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/core/quickload/src/main/java/org/lorainelab/igb/quickload/util/QuickloadUtils.java: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\quickload\src\main\java\org\lorainelab\igb\quickload\util\QuickloadUtils.java uses or overrides a deprecated API. [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/core/quickload/src/main/java/org/lorainelab/igb/quickload/util/QuickloadUtils.java: Recompile with -Xlint:deprecation for details. [INFO] [INFO] --- resources:3.3.1:testResources (default-testResources) @ quickload --- [INFO] Copying 9 resources from src\test\resources to target\test-classes [INFO] [INFO] --- compiler:3.11.0:testCompile (default-testCompile) @ quickload --- [INFO] Changes detected - recompiling the module! :dependency [INFO] Compiling 3 source files with javac [debug target 21] to target\test-classes [INFO] [INFO] --- surefire:3.1.2:test (default-test) @ quickload --- [INFO] Tests are skipped. [INFO] [INFO] --- bundle:5.1.9:bundle (default-bundle) @ quickload --- [WARNING] Bundle org.lorainelab.igb:quickload:bundle:10.0.0 : Service-Component is normally generated by bnd. If you want to point at specific component XML files (wildcards are allowed, see findEntries) make sure it ends in '.xml'. Found * [INFO] Building bundle: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\quickload\target\quickload-10.0.0.jar [INFO] Writing manifest: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\quickload\target\classes\META-INF\MANIFEST.MF [INFO] [INFO] --- install:3.1.1:install (default-install) @ quickload --- [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\quickload\pom.xml to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\quickload\10.0.0\quickload-10.0.0.pom [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\quickload\target\quickload-10.0.0.jar to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\quickload\10.0.0\quickload-10.0.0.jar [INFO] [INFO] --- bundle:5.1.9:install (default-install) @ quickload --- [INFO] Installing org/lorainelab/igb/quickload/10.0.0/quickload-10.0.0.jar [INFO] Writing OBR metadata [INFO] [INFO] --- dependency:3.5.0:copy (copy) @ quickload --- [INFO] Configured Artifact: org.lorainelab.igb:quickload:10.0.0:jar [INFO] Copying quickload-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\dynamic\quickload-10.0.0.jar [INFO] [INFO] -----------------------< org.lorainelab.igb:das >----------------------- [INFO] Building Core - DAS (data source) 10.0.0 [23/56] [INFO] from core\das\pom.xml [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- clean:3.3.2:clean (default-clean) @ das --- [INFO] Deleting C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\das\target [INFO] Deleting C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\dynamic (includes = [das-10.0.0.jar], excludes = []) [INFO] [INFO] --- resources:3.3.1:resources (default-resources) @ das --- [INFO] Copying 0 resource from src\main\java to target\classes [INFO] skip non existing resourceDirectory C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\das\src\main\resources [INFO] [INFO] --- compiler:3.11.0:compile (default-compile) @ das --- [INFO] Changes detected - recompiling the module! :dependency [INFO] Compiling 33 source files with javac [debug target 21] to target\classes [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/core/das/src/main/java/org/lorainelab/igb/das/utils/DasServerUtils.java: Some input files use or override a deprecated API. [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/core/das/src/main/java/org/lorainelab/igb/das/utils/DasServerUtils.java: Recompile with -Xlint:deprecation for details. [INFO] [INFO] --- resources:3.3.1:testResources (default-testResources) @ das --- [INFO] Copying 3 resources from src\test\resources to target\test-classes [INFO] [INFO] --- compiler:3.11.0:testCompile (default-testCompile) @ das --- [INFO] Changes detected - recompiling the module! :dependency [INFO] Compiling 3 source files with javac [debug target 21] to target\test-classes [INFO] [INFO] --- surefire:3.1.2:test (default-test) @ das --- [INFO] Tests are skipped. [INFO] [INFO] --- bundle:5.1.9:bundle (default-bundle) @ das --- [WARNING] Bundle org.lorainelab.igb:das:bundle:10.0.0 : Service-Component is normally generated by bnd. If you want to point at specific component XML files (wildcards are allowed, see findEntries) make sure it ends in '.xml'. Found * [INFO] Building bundle: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\das\target\das-10.0.0.jar [INFO] Writing manifest: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\das\target\classes\META-INF\MANIFEST.MF [INFO] [INFO] --- install:3.1.1:install (default-install) @ das --- [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\das\pom.xml to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\das\10.0.0\das-10.0.0.pom [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\core\das\target\das-10.0.0.jar to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\das\10.0.0\das-10.0.0.jar [INFO] [INFO] --- bundle:5.1.9:install (default-install) @ das --- [INFO] Installing org/lorainelab/igb/das/10.0.0/das-10.0.0.jar [INFO] Writing OBR metadata [INFO] [INFO] --- dependency:3.5.0:copy (copy) @ das --- [INFO] Configured Artifact: org.lorainelab.igb:das:10.0.0:jar [INFO] Copying das-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\dynamic\das-10.0.0.jar [INFO] [INFO] -----------------< org.lorainelab.igb:apollo-library >------------------ [INFO] Building Plugin - Apollo Library 10.0.0 [24/56] [INFO] from plugins\ApolloLibrary\pom.xml [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- clean:3.3.2:clean (default-clean) @ apollo-library --- [INFO] Deleting C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\ApolloLibrary\target [INFO] [INFO] --- resources:3.3.1:resources (default-resources) @ apollo-library --- [INFO] Copying 0 resource from src\main\java to target\classes [INFO] Copying 1 resource from src\main\resources to target\classes [INFO] [INFO] --- compiler:3.11.0:compile (default-compile) @ apollo-library --- [INFO] Changes detected - recompiling the module! :source [INFO] Compiling 17 source files with javac [debug target 21] to target\classes [INFO] [INFO] --- resources:3.3.1:testResources (default-testResources) @ apollo-library --- [INFO] Copying 1 resource from src\test\resources to target\test-classes [INFO] [INFO] --- compiler:3.11.0:testCompile (default-testCompile) @ apollo-library --- [INFO] No sources to compile [INFO] [INFO] --- surefire:3.1.2:test (default-test) @ apollo-library --- [INFO] Tests are skipped. [INFO] [INFO] --- bundle:5.1.9:bundle (default-bundle) @ apollo-library --- [INFO] Building bundle: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\ApolloLibrary\target\apollo-library-10.0.0.jar [INFO] Writing manifest: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\ApolloLibrary\target\classes\META-INF\MANIFEST.MF [INFO] [INFO] --- install:3.1.1:install (default-install) @ apollo-library --- [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\ApolloLibrary\pom.xml to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\apollo-library\10.0.0\apollo-library-10.0.0.pom [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\ApolloLibrary\target\apollo-library-10.0.0.jar to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\apollo-library\10.0.0\apollo-library-10.0.0.jar [INFO] [INFO] --- bundle:5.1.9:install (default-install) @ apollo-library --- [INFO] Installing org/lorainelab/igb/apollo-library/10.0.0/apollo-library-10.0.0.jar [INFO] Writing OBR metadata [INFO] [INFO] --- dependency:3.5.0:copy (copy) @ apollo-library --- [INFO] Configured Artifact: org.lorainelab.igb:apollo-library:10.0.0:jar [INFO] Copying apollo-library-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\apollo-library-10.0.0.jar [INFO] [INFO] -------------< org.lorainelab.igb:track-operations-panel >-------------- [INFO] Building Plugin - Track Operations API, GUI 10.0.0 [25/56] [INFO] from plugins\track-operations-panel\pom.xml [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- clean:3.3.2:clean (default-clean) @ track-operations-panel --- [INFO] Deleting C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\track-operations-panel\target [INFO] [INFO] --- resources:3.3.1:resources (default-resources) @ track-operations-panel --- [INFO] Copying 0 resource from src\main\java to target\classes [INFO] Copying 1 resource from src\main\resources to target\classes [INFO] [INFO] --- compiler:3.11.0:compile (default-compile) @ track-operations-panel --- [INFO] Changes detected - recompiling the module! :dependency [INFO] Compiling 8 source files with javac [debug target 21] to target\classes [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/plugins/track-operations-panel/src/main/java/org/lorainelab/igb/track/operations/api/OperationsPanel.java: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\track-operations-panel\src\main\java\org\lorainelab\igb\track\operations\api\OperationsPanel.java uses unchecked or unsafe operations. [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/plugins/track-operations-panel/src/main/java/org/lorainelab/igb/track/operations/api/OperationsPanel.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- resources:3.3.1:testResources (default-testResources) @ track-operations-panel --- [INFO] Copying 1 resource from src\test\resources to target\test-classes [INFO] [INFO] --- compiler:3.11.0:testCompile (default-testCompile) @ track-operations-panel --- [INFO] No sources to compile [INFO] [INFO] --- surefire:3.1.2:test (default-test) @ track-operations-panel --- [INFO] Tests are skipped. [INFO] [INFO] --- bundle:5.1.9:bundle (default-bundle) @ track-operations-panel --- [WARNING] Bundle org.lorainelab.igb:track-operations-panel:bundle:10.0.0 : Service-Component is normally generated by bnd. If you want to point at specific component XML files (wildcards are allowed, see findEntries) make sure it ends in '.xml'. Found * [WARNING] Bundle org.lorainelab.igb:track-operations-panel:bundle:10.0.0 : Export org.lorainelab.igb.track.operations.api, has 1, private references [org.lorainelab.igb.track.operations] [INFO] Building bundle: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\track-operations-panel\target\track-operations-panel-10.0.0.jar [INFO] Writing manifest: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\track-operations-panel\target\classes\META-INF\MANIFEST.MF [INFO] [INFO] --- install:3.1.1:install (default-install) @ track-operations-panel --- [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\track-operations-panel\pom.xml to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\track-operations-panel\10.0.0\track-operations-panel-10.0.0.pom [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\track-operations-panel\target\track-operations-panel-10.0.0.jar to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\track-operations-panel\10.0.0\track-operations-panel-10.0.0.jar [INFO] [INFO] --- bundle:5.1.9:install (default-install) @ track-operations-panel --- [INFO] Installing org/lorainelab/igb/track-operations-panel/10.0.0/track-operations-panel-10.0.0.jar [INFO] Writing OBR metadata [INFO] [INFO] --- dependency:3.5.0:copy (copy) @ track-operations-panel --- [INFO] Configured Artifact: org.lorainelab.igb:track-operations-panel:10.0.0:jar [INFO] Copying track-operations-panel-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\track-operations-panel-10.0.0.jar [INFO] [INFO] -----------------< org.lorainelab.igb:annotation-tab >------------------ [INFO] Building Plugin - Annotation Tab 10.0.0 [26/56] [INFO] from plugins\AnnotationTab\pom.xml [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- clean:3.3.2:clean (default-clean) @ annotation-tab --- [INFO] Deleting C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\AnnotationTab\target [INFO] [INFO] --- resources:3.3.1:resources (default-resources) @ annotation-tab --- [INFO] Copying 0 resource from src\main\java to target\classes [INFO] Copying 1 resource from src\main\resources to target\classes [INFO] [INFO] --- compiler:3.11.0:compile (default-compile) @ annotation-tab --- [INFO] Changes detected - recompiling the module! :dependency [INFO] Compiling 3 source files with javac [debug target 21] to target\classes [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/plugins/AnnotationTab/src/main/java/com/affymetrix/igb/tabs/annotation/AnnotationPanelImpl.java: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\AnnotationTab\src\main\java\com\affymetrix\igb\tabs\annotation\AnnotationPanelImpl.java uses unchecked or unsafe operations. [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/plugins/AnnotationTab/src/main/java/com/affymetrix/igb/tabs/annotation/AnnotationPanelImpl.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- resources:3.3.1:testResources (default-testResources) @ annotation-tab --- [INFO] Copying 1 resource from src\test\resources to target\test-classes [INFO] [INFO] --- compiler:3.11.0:testCompile (default-testCompile) @ annotation-tab --- [INFO] No sources to compile [INFO] [INFO] --- surefire:3.1.2:test (default-test) @ annotation-tab --- [INFO] Tests are skipped. [INFO] [INFO] --- bundle:5.1.9:bundle (default-bundle) @ annotation-tab --- [WARNING] Bundle org.lorainelab.igb:annotation-tab:bundle:10.0.0 : Service-Component is normally generated by bnd. If you want to point at specific component XML files (wildcards are allowed, see findEntries) make sure it ends in '.xml'. Found * [INFO] Building bundle: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\AnnotationTab\target\annotation-tab-10.0.0.jar [INFO] Writing manifest: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\AnnotationTab\target\classes\META-INF\MANIFEST.MF [INFO] [INFO] --- install:3.1.1:install (default-install) @ annotation-tab --- [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\AnnotationTab\pom.xml to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\annotation-tab\10.0.0\annotation-tab-10.0.0.pom [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\AnnotationTab\target\annotation-tab-10.0.0.jar to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\annotation-tab\10.0.0\annotation-tab-10.0.0.jar [INFO] [INFO] --- bundle:5.1.9:install (default-install) @ annotation-tab --- [INFO] Installing org/lorainelab/igb/annotation-tab/10.0.0/annotation-tab-10.0.0.jar [INFO] Writing OBR metadata [INFO] [INFO] --- dependency:3.5.0:copy (copy) @ annotation-tab --- [INFO] Configured Artifact: org.lorainelab.igb:annotation-tab:10.0.0:jar [INFO] Copying annotation-tab-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\annotation-tab-10.0.0.jar [INFO] [INFO] -------------------< org.lorainelab.igb:console-tab >------------------- [INFO] Building Plugin - Console Tab 10.0.0 [27/56] [INFO] from plugins\ConsoleTab\pom.xml [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- clean:3.3.2:clean (default-clean) @ console-tab --- [INFO] Deleting C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\ConsoleTab\target [INFO] [INFO] --- resources:3.3.1:resources (default-resources) @ console-tab --- [INFO] Copying 0 resource from src\main\java to target\classes [INFO] Copying 1 resource from src\main\resources to target\classes [INFO] [INFO] --- compiler:3.11.0:compile (default-compile) @ console-tab --- [INFO] Changes detected - recompiling the module! :dependency [INFO] Compiling 3 source files with javac [debug target 21] to target\classes [INFO] [INFO] --- resources:3.3.1:testResources (default-testResources) @ console-tab --- [INFO] Copying 1 resource from src\test\resources to target\test-classes [INFO] [INFO] --- compiler:3.11.0:testCompile (default-testCompile) @ console-tab --- [INFO] No sources to compile [INFO] [INFO] --- surefire:3.1.2:test (default-test) @ console-tab --- [INFO] Tests are skipped. [INFO] [INFO] --- bundle:5.1.9:bundle (default-bundle) @ console-tab --- [WARNING] Bundle org.lorainelab.igb:console-tab:bundle:10.0.0 : Service-Component is normally generated by bnd. If you want to point at specific component XML files (wildcards are allowed, see findEntries) make sure it ends in '.xml'. Found * [INFO] Building bundle: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\ConsoleTab\target\console-tab-10.0.0.jar [INFO] Writing manifest: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\ConsoleTab\target\classes\META-INF\MANIFEST.MF [INFO] [INFO] --- install:3.1.1:install (default-install) @ console-tab --- [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\ConsoleTab\pom.xml to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\console-tab\10.0.0\console-tab-10.0.0.pom [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\ConsoleTab\target\console-tab-10.0.0.jar to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\console-tab\10.0.0\console-tab-10.0.0.jar [INFO] [INFO] --- bundle:5.1.9:install (default-install) @ console-tab --- [INFO] Installing org/lorainelab/igb/console-tab/10.0.0/console-tab-10.0.0.jar [INFO] Writing OBR metadata [INFO] [INFO] --- dependency:3.5.0:copy (copy) @ console-tab --- [INFO] Configured Artifact: org.lorainelab.igb:console-tab:10.0.0:jar [INFO] Copying console-tab-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\console-tab-10.0.0.jar [INFO] [INFO] ------------------< org.lorainelab.igb:bigBedHandler >------------------ [INFO] Building Plugin - Bigbed data format handler 10.0.0 [28/56] [INFO] from plugins\BigBedHandler\pom.xml [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- clean:3.3.2:clean (default-clean) @ bigBedHandler --- [INFO] Deleting C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\BigBedHandler\target [INFO] [INFO] --- resources:3.3.1:resources (default-resources) @ bigBedHandler --- [INFO] Copying 0 resource from src\main\java to target\classes [INFO] Copying 1 resource from src\main\resources to target\classes [INFO] [INFO] --- compiler:3.11.0:compile (default-compile) @ bigBedHandler --- [INFO] Changes detected - recompiling the module! :dependency [INFO] Compiling 2 source files with javac [debug target 21] to target\classes [INFO] [INFO] --- resources:3.3.1:testResources (default-testResources) @ bigBedHandler --- [INFO] Copying 1 resource from src\test\resources to target\test-classes [INFO] [INFO] --- compiler:3.11.0:testCompile (default-testCompile) @ bigBedHandler --- [INFO] No sources to compile [INFO] [INFO] --- surefire:3.1.2:test (default-test) @ bigBedHandler --- [INFO] Tests are skipped. [INFO] [INFO] --- bundle:5.1.9:bundle (default-bundle) @ bigBedHandler --- [WARNING] Bundle org.lorainelab.igb:bigBedHandler:bundle:10.0.0 : Service-Component is normally generated by bnd. If you want to point at specific component XML files (wildcards are allowed, see findEntries) make sure it ends in '.xml'. Found * [INFO] Building bundle: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\BigBedHandler\target\bigBedHandler-10.0.0.jar [INFO] Writing manifest: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\BigBedHandler\target\classes\META-INF\MANIFEST.MF [INFO] [INFO] --- install:3.1.1:install (default-install) @ bigBedHandler --- [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\BigBedHandler\pom.xml to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\bigBedHandler\10.0.0\bigBedHandler-10.0.0.pom [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\BigBedHandler\target\bigBedHandler-10.0.0.jar to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\bigBedHandler\10.0.0\bigBedHandler-10.0.0.jar [INFO] [INFO] --- bundle:5.1.9:install (default-install) @ bigBedHandler --- [INFO] Installing org/lorainelab/igb/bigBedHandler/10.0.0/bigBedHandler-10.0.0.jar [INFO] Writing OBR metadata [INFO] [INFO] --- dependency:3.5.0:copy (copy) @ bigBedHandler --- [INFO] Configured Artifact: org.lorainelab.igb:bigBedHandler:10.0.0:jar [INFO] Copying bigBedHandler-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\bigBedHandler-10.0.0.jar [INFO] [INFO] ------------------< org.lorainelab.igb:bigWigHandler >------------------ [INFO] Building Plugin - Bigwig data format handler 10.0.0 [29/56] [INFO] from plugins\BigWigHandler\pom.xml [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- clean:3.3.2:clean (default-clean) @ bigWigHandler --- [INFO] Deleting C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\BigWigHandler\target [INFO] [INFO] --- resources:3.3.1:resources (default-resources) @ bigWigHandler --- [INFO] Copying 0 resource from src\main\java to target\classes [INFO] Copying 1 resource from src\main\resources to target\classes [INFO] [INFO] --- compiler:3.11.0:compile (default-compile) @ bigWigHandler --- [INFO] Changes detected - recompiling the module! :dependency [INFO] Compiling 3 source files with javac [debug target 21] to target\classes [INFO] [INFO] --- resources:3.3.1:testResources (default-testResources) @ bigWigHandler --- [INFO] Copying 1 resource from src\test\resources to target\test-classes [INFO] [INFO] --- compiler:3.11.0:testCompile (default-testCompile) @ bigWigHandler --- [INFO] No sources to compile [INFO] [INFO] --- surefire:3.1.2:test (default-test) @ bigWigHandler --- [INFO] Tests are skipped. [INFO] [INFO] --- bundle:5.1.9:bundle (default-bundle) @ bigWigHandler --- [WARNING] Bundle org.lorainelab.igb:bigWigHandler:bundle:10.0.0 : Service-Component is normally generated by bnd. If you want to point at specific component XML files (wildcards are allowed, see findEntries) make sure it ends in '.xml'. Found * [INFO] Building bundle: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\BigWigHandler\target\bigWigHandler-10.0.0.jar [INFO] Writing manifest: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\BigWigHandler\target\classes\META-INF\MANIFEST.MF [INFO] [INFO] --- install:3.1.1:install (default-install) @ bigWigHandler --- [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\BigWigHandler\pom.xml to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\bigWigHandler\10.0.0\bigWigHandler-10.0.0.pom [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\BigWigHandler\target\bigWigHandler-10.0.0.jar to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\bigWigHandler\10.0.0\bigWigHandler-10.0.0.jar [INFO] [INFO] --- bundle:5.1.9:install (default-install) @ bigWigHandler --- [INFO] Installing org/lorainelab/igb/bigWigHandler/10.0.0/bigWigHandler-10.0.0.jar [INFO] Writing OBR metadata [INFO] [INFO] --- dependency:3.5.0:copy (copy) @ bigWigHandler --- [INFO] Configured Artifact: org.lorainelab.igb:bigWigHandler:10.0.0:jar [INFO] Copying bigWigHandler-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\bigWigHandler-10.0.0.jar [INFO] [INFO] --------------------< org.lorainelab.igb:bookmark >--------------------- [INFO] Building Plugin - Bookmarks and REST API 10.0.0 [30/56] [INFO] from plugins\Bookmark\pom.xml [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- clean:3.3.2:clean (default-clean) @ bookmark --- [INFO] Deleting C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\Bookmark\target [INFO] [INFO] --- resources:3.3.1:resources (default-resources) @ bookmark --- [INFO] Copying 0 resource from src\main\java to target\classes [INFO] Copying 2 resources from src\main\resources to target\classes [INFO] [INFO] --- compiler:3.11.0:compile (default-compile) @ bookmark --- [INFO] Changes detected - recompiling the module! :dependency [INFO] Compiling 32 source files with javac [debug target 21] to target\classes [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/plugins/Bookmark/src/main/java/com/affymetrix/igb/bookmarks/model/Bookmark.java: Some input files use or override a deprecated API. [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/plugins/Bookmark/src/main/java/com/affymetrix/igb/bookmarks/model/Bookmark.java: Recompile with -Xlint:deprecation for details. [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/plugins/Bookmark/src/main/java/com/affymetrix/igb/bookmarks/BookmarkController.java: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\Bookmark\src\main\java\com\affymetrix\igb\bookmarks\BookmarkController.java uses unchecked or unsafe operations. [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/plugins/Bookmark/src/main/java/com/affymetrix/igb/bookmarks/BookmarkController.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- resources:3.3.1:testResources (default-testResources) @ bookmark --- [INFO] Copying 1 resource from src\test\resources to target\test-classes [INFO] [INFO] --- compiler:3.11.0:testCompile (default-testCompile) @ bookmark --- [INFO] Changes detected - recompiling the module! :dependency [INFO] Compiling 1 source file with javac [debug target 21] to target\test-classes [INFO] [INFO] --- surefire:3.1.2:test (default-test) @ bookmark --- [INFO] Tests are skipped. [INFO] [INFO] --- bundle:5.1.9:bundle (default-bundle) @ bookmark --- [WARNING] Bundle org.lorainelab.igb:bookmark:bundle:10.0.0 : Service-Component is normally generated by bnd. If you want to point at specific component XML files (wildcards are allowed, see findEntries) make sure it ends in '.xml'. Found * [INFO] Building bundle: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\Bookmark\target\bookmark-10.0.0.jar [INFO] Writing manifest: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\Bookmark\target\classes\META-INF\MANIFEST.MF [INFO] [INFO] --- install:3.1.1:install (default-install) @ bookmark --- [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\Bookmark\pom.xml to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\bookmark\10.0.0\bookmark-10.0.0.pom [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\Bookmark\target\bookmark-10.0.0.jar to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\bookmark\10.0.0\bookmark-10.0.0.jar [INFO] [INFO] --- bundle:5.1.9:install (default-install) @ bookmark --- [INFO] Installing org/lorainelab/igb/bookmark/10.0.0/bookmark-10.0.0.jar [INFO] Writing OBR metadata [INFO] [INFO] --- dependency:3.5.0:copy (copy) @ bookmark --- [INFO] Configured Artifact: org.lorainelab.igb:bookmark:10.0.0:jar [INFO] Copying bookmark-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\bookmark-10.0.0.jar [INFO] [INFO] ------------------< org.lorainelab.igb:externalView >------------------- [INFO] Building Plugin - External View 10.0.0 [31/56] [INFO] from plugins\ExternalView\pom.xml [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- clean:3.3.2:clean (default-clean) @ externalView --- [INFO] Deleting C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\ExternalView\target [INFO] [INFO] --- resources:3.3.1:resources (default-resources) @ externalView --- [INFO] Copying 0 resource from src\main\java to target\classes [INFO] Copying 3 resources from src\main\resources to target\classes [INFO] [INFO] --- compiler:3.11.0:compile (default-compile) @ externalView --- [INFO] Changes detected - recompiling the module! :dependency [INFO] Compiling 12 source files with javac [debug target 21] to target\classes [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/plugins/ExternalView/src/main/java/com/affymetrix/igb/external/BrowserLoader.java: Some input files use or override a deprecated API. [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/plugins/ExternalView/src/main/java/com/affymetrix/igb/external/BrowserLoader.java: Recompile with -Xlint:deprecation for details. [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/plugins/ExternalView/src/main/java/com/affymetrix/igb/external/ExternalViewer.java: Some input files use unchecked or unsafe operations. [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/plugins/ExternalView/src/main/java/com/affymetrix/igb/external/ExternalViewer.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- resources:3.3.1:testResources (default-testResources) @ externalView --- [INFO] Copying 1 resource from src\test\resources to target\test-classes [INFO] [INFO] --- compiler:3.11.0:testCompile (default-testCompile) @ externalView --- [INFO] Changes detected - recompiling the module! :dependency [INFO] Compiling 2 source files with javac [debug target 21] to target\test-classes [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/plugins/ExternalView/src/test/java/com/affymetrix/igb/external/EndPointTest.java: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\ExternalView\src\test\java\com\affymetrix\igb\external\EndPointTest.java uses or overrides a deprecated API. [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/plugins/ExternalView/src/test/java/com/affymetrix/igb/external/EndPointTest.java: Recompile with -Xlint:deprecation for details. [INFO] [INFO] --- surefire:3.1.2:test (default-test) @ externalView --- [INFO] Tests are skipped. [INFO] [INFO] --- bundle:5.1.9:bundle (default-bundle) @ externalView --- [WARNING] Bundle org.lorainelab.igb:externalView:bundle:10.0.0 : Service-Component is normally generated by bnd. If you want to point at specific component XML files (wildcards are allowed, see findEntries) make sure it ends in '.xml'. Found * [INFO] Building bundle: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\ExternalView\target\externalView-10.0.0.jar [INFO] Writing manifest: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\ExternalView\target\classes\META-INF\MANIFEST.MF [INFO] [INFO] --- install:3.1.1:install (default-install) @ externalView --- [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\ExternalView\pom.xml to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\externalView\10.0.0\externalView-10.0.0.pom [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\ExternalView\target\externalView-10.0.0.jar to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\externalView\10.0.0\externalView-10.0.0.jar [INFO] [INFO] --- bundle:5.1.9:install (default-install) @ externalView --- [INFO] Installing org/lorainelab/igb/externalView/10.0.0/externalView-10.0.0.jar [INFO] Writing OBR metadata [INFO] [INFO] --- dependency:3.5.0:copy (copy) @ externalView --- [INFO] Configured Artifact: org.lorainelab.igb:externalView:10.0.0:jar [INFO] Copying externalView-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\externalView-10.0.0.jar [INFO] [INFO] --------------------< org.lorainelab.igb:graphTab >--------------------- [INFO] Building Plugin - Graph Tab 10.0.0 [32/56] [INFO] from plugins\GraphTab\pom.xml [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- clean:3.3.2:clean (default-clean) @ graphTab --- [INFO] Deleting C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\GraphTab\target [INFO] [INFO] --- resources:3.3.1:resources (default-resources) @ graphTab --- [INFO] Copying 0 resource from src\main\java to target\classes [INFO] Copying 1 resource from src\main\resources to target\classes [INFO] [INFO] --- compiler:3.11.0:compile (default-compile) @ graphTab --- [INFO] Changes detected - recompiling the module! :dependency [INFO] Compiling 4 source files with javac [debug target 21] to target\classes [INFO] [INFO] --- resources:3.3.1:testResources (default-testResources) @ graphTab --- [INFO] Copying 1 resource from src\test\resources to target\test-classes [INFO] [INFO] --- compiler:3.11.0:testCompile (default-testCompile) @ graphTab --- [INFO] No sources to compile [INFO] [INFO] --- surefire:3.1.2:test (default-test) @ graphTab --- [INFO] Tests are skipped. [INFO] [INFO] --- bundle:5.1.9:bundle (default-bundle) @ graphTab --- [WARNING] Bundle org.lorainelab.igb:graphTab:bundle:10.0.0 : Service-Component is normally generated by bnd. If you want to point at specific component XML files (wildcards are allowed, see findEntries) make sure it ends in '.xml'. Found * [INFO] Building bundle: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\GraphTab\target\graphTab-10.0.0.jar [INFO] Writing manifest: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\GraphTab\target\classes\META-INF\MANIFEST.MF [INFO] [INFO] --- install:3.1.1:install (default-install) @ graphTab --- [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\GraphTab\pom.xml to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\graphTab\10.0.0\graphTab-10.0.0.pom [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\GraphTab\target\graphTab-10.0.0.jar to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\graphTab\10.0.0\graphTab-10.0.0.jar [INFO] [INFO] --- bundle:5.1.9:install (default-install) @ graphTab --- [INFO] Installing org/lorainelab/igb/graphTab/10.0.0/graphTab-10.0.0.jar [INFO] Writing OBR metadata [INFO] [INFO] --- dependency:3.5.0:copy (copy) @ graphTab --- [INFO] Configured Artifact: org.lorainelab.igb:graphTab:10.0.0:jar [INFO] Copying graphTab-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\graphTab-10.0.0.jar [INFO] [INFO] -----------------< org.lorainelab.igb:image-exporter >------------------ [INFO] Building Plugin - Save Image GUI 10.0.0 [33/56] [INFO] from plugins\image-exporter\pom.xml [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- clean:3.3.2:clean (default-clean) @ image-exporter --- [INFO] Deleting C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\image-exporter\target [INFO] [INFO] --- resources:3.3.1:resources (default-resources) @ image-exporter --- [INFO] Copying 0 resource from src\main\java to target\classes [INFO] Copying 2 resources from src\main\resources to target\classes [INFO] [INFO] --- compiler:3.11.0:compile (default-compile) @ image-exporter --- [INFO] Changes detected - recompiling the module! :dependency [INFO] Compiling 9 source files with javac [debug target 21] to target\classes [WARNING] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/plugins/image-exporter/src/main/java/org/lorainelab/igb/image/exporter/PreviewLabel.java:[30,25] Double(double) in java.lang.Double has been deprecated and marked for removal [WARNING] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/plugins/image-exporter/src/main/java/org/lorainelab/igb/image/exporter/PreviewLabel.java:[31,26] Double(double) in java.lang.Double has been deprecated and marked for removal [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/plugins/image-exporter/src/main/java/org/lorainelab/igb/image/exporter/ExportDialogGui.java: Some input files use unchecked or unsafe operations. [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/plugins/image-exporter/src/main/java/org/lorainelab/igb/image/exporter/ExportDialogGui.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- resources:3.3.1:testResources (default-testResources) @ image-exporter --- [INFO] skip non existing resourceDirectory C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\image-exporter\src\test\resources [INFO] [INFO] --- compiler:3.11.0:testCompile (default-testCompile) @ image-exporter --- [INFO] Changes detected - recompiling the module! :dependency [INFO] Compiling 1 source file with javac [debug target 21] to target\test-classes [INFO] [INFO] --- surefire:3.1.2:test (default-test) @ image-exporter --- [INFO] Tests are skipped. [INFO] [INFO] --- bundle:5.1.9:bundle (default-bundle) @ image-exporter --- [WARNING] Bundle org.lorainelab.igb:image-exporter:bundle:10.0.0 : Service-Component is normally generated by bnd. If you want to point at specific component XML files (wildcards are allowed, see findEntries) make sure it ends in '.xml'. Found * [INFO] Building bundle: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\image-exporter\target\image-exporter-10.0.0.jar [INFO] Writing manifest: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\image-exporter\target\classes\META-INF\MANIFEST.MF [INFO] [INFO] --- install:3.1.1:install (default-install) @ image-exporter --- [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\image-exporter\pom.xml to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\image-exporter\10.0.0\image-exporter-10.0.0.pom [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\image-exporter\target\image-exporter-10.0.0.jar to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\image-exporter\10.0.0\image-exporter-10.0.0.jar [INFO] [INFO] --- bundle:5.1.9:install (default-install) @ image-exporter --- [INFO] Installing org/lorainelab/igb/image-exporter/10.0.0/image-exporter-10.0.0.jar [INFO] Writing OBR metadata [INFO] [INFO] --- dependency:3.5.0:copy (copy) @ image-exporter --- [INFO] Configured Artifact: org.lorainelab.igb:image-exporter:10.0.0:jar [INFO] Copying image-exporter-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\image-exporter-10.0.0.jar [INFO] [INFO] --------------------< org.lorainelab.igb:igbScript >-------------------- [INFO] Building Plugin - Script handler 10.0.0 [34/56] [INFO] from plugins\IGBScript\pom.xml [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- clean:3.3.2:clean (default-clean) @ igbScript --- [INFO] Deleting C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\IGBScript\target [INFO] [INFO] --- resources:3.3.1:resources (default-resources) @ igbScript --- [INFO] Copying 0 resource from src\main\java to target\classes [INFO] Copying 1 resource from src\main\resources to target\classes [INFO] [INFO] --- compiler:3.11.0:compile (default-compile) @ igbScript --- [INFO] Changes detected - recompiling the module! :dependency [INFO] Compiling 3 source files with javac [debug target 21] to target\classes [INFO] [INFO] --- resources:3.3.1:testResources (default-testResources) @ igbScript --- [INFO] Copying 1 resource from src\test\resources to target\test-classes [INFO] [INFO] --- compiler:3.11.0:testCompile (default-testCompile) @ igbScript --- [INFO] No sources to compile [INFO] [INFO] --- surefire:3.1.2:test (default-test) @ igbScript --- [INFO] Tests are skipped. [INFO] [INFO] --- bundle:5.1.9:bundle (default-bundle) @ igbScript --- [WARNING] Bundle org.lorainelab.igb:igbScript:bundle:10.0.0 : Service-Component is normally generated by bnd. If you want to point at specific component XML files (wildcards are allowed, see findEntries) make sure it ends in '.xml'. Found * [INFO] Building bundle: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\IGBScript\target\igbScript-10.0.0.jar [INFO] Writing manifest: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\IGBScript\target\classes\META-INF\MANIFEST.MF [INFO] [INFO] --- install:3.1.1:install (default-install) @ igbScript --- [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\IGBScript\pom.xml to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\igbScript\10.0.0\igbScript-10.0.0.pom [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\IGBScript\target\igbScript-10.0.0.jar to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\igbScript\10.0.0\igbScript-10.0.0.jar [INFO] [INFO] --- bundle:5.1.9:install (default-install) @ igbScript --- [INFO] Installing org/lorainelab/igb/igbScript/10.0.0/igbScript-10.0.0.jar [INFO] Writing OBR metadata [INFO] [INFO] --- dependency:3.5.0:copy (copy) @ igbScript --- [INFO] Configured Artifact: org.lorainelab.igb:igbScript:10.0.0:jar [INFO] Copying igbScript-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\igbScript-10.0.0.jar [INFO] [INFO] ------------------< org.lorainelab.igb:keyWordSearch >------------------ [INFO] Building Plugin - Keyword Search 10.0.0 [35/56] [INFO] from plugins\KeyWordSearch\pom.xml [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- clean:3.3.2:clean (default-clean) @ keyWordSearch --- [INFO] Deleting C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\KeyWordSearch\target [INFO] [INFO] --- resources:3.3.1:resources (default-resources) @ keyWordSearch --- [INFO] Copying 0 resource from src\main\java to target\classes [INFO] Copying 1 resource from src\main\resources to target\classes [INFO] [INFO] --- compiler:3.11.0:compile (default-compile) @ keyWordSearch --- [INFO] Changes detected - recompiling the module! :dependency [INFO] Compiling 1 source file with javac [debug target 21] to target\classes [INFO] [INFO] --- resources:3.3.1:testResources (default-testResources) @ keyWordSearch --- [INFO] Copying 1 resource from src\test\resources to target\test-classes [INFO] [INFO] --- compiler:3.11.0:testCompile (default-testCompile) @ keyWordSearch --- [INFO] No sources to compile [INFO] [INFO] --- surefire:3.1.2:test (default-test) @ keyWordSearch --- [INFO] Tests are skipped. [INFO] [INFO] --- bundle:5.1.9:bundle (default-bundle) @ keyWordSearch --- [WARNING] Bundle org.lorainelab.igb:keyWordSearch:bundle:10.0.0 : Service-Component is normally generated by bnd. If you want to point at specific component XML files (wildcards are allowed, see findEntries) make sure it ends in '.xml'. Found * [INFO] Building bundle: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\KeyWordSearch\target\keyWordSearch-10.0.0.jar [INFO] Writing manifest: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\KeyWordSearch\target\classes\META-INF\MANIFEST.MF [INFO] [INFO] --- install:3.1.1:install (default-install) @ keyWordSearch --- [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\KeyWordSearch\pom.xml to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\keyWordSearch\10.0.0\keyWordSearch-10.0.0.pom [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\KeyWordSearch\target\keyWordSearch-10.0.0.jar to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\keyWordSearch\10.0.0\keyWordSearch-10.0.0.jar [INFO] [INFO] --- bundle:5.1.9:install (default-install) @ keyWordSearch --- [INFO] Installing org/lorainelab/igb/keyWordSearch/10.0.0/keyWordSearch-10.0.0.jar [INFO] Writing OBR metadata [INFO] [INFO] --- dependency:3.5.0:copy (copy) @ keyWordSearch --- [INFO] Configured Artifact: org.lorainelab.igb:keyWordSearch:10.0.0:jar [INFO] Copying keyWordSearch-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\keyWordSearch-10.0.0.jar [INFO] [INFO] --------------------< org.lorainelab.igb:ncbiBlast >-------------------- [INFO] Building Plugin - NCBI Blast 10.0.0 [36/56] [INFO] from plugins\NCBIBlast\pom.xml [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- clean:3.3.2:clean (default-clean) @ ncbiBlast --- [INFO] Deleting C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\NCBIBlast\target [INFO] [INFO] --- resources:3.3.1:resources (default-resources) @ ncbiBlast --- [INFO] Copying 0 resource from src\main\java to target\classes [INFO] Copying 2 resources from src\main\resources to target\classes [INFO] [INFO] --- compiler:3.11.0:compile (default-compile) @ ncbiBlast --- [INFO] Changes detected - recompiling the module! :dependency [INFO] Compiling 11 source files with javac [debug target 21] to target\classes [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/plugins/NCBIBlast/src/main/java/apollo/analysis/RemoteBlastNCBI.java: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\NCBIBlast\src\main\java\apollo\analysis\RemoteBlastNCBI.java uses or overrides a deprecated API. [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/plugins/NCBIBlast/src/main/java/apollo/analysis/RemoteBlastNCBI.java: Recompile with -Xlint:deprecation for details. [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/plugins/NCBIBlast/src/main/java/apollo/analysis/RemoteBlastNCBI.java: Some input files use unchecked or unsafe operations. [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/plugins/NCBIBlast/src/main/java/apollo/analysis/RemoteBlastNCBI.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- resources:3.3.1:testResources (default-testResources) @ ncbiBlast --- [INFO] Copying 1 resource from src\test\resources to target\test-classes [INFO] [INFO] --- compiler:3.11.0:testCompile (default-testCompile) @ ncbiBlast --- [INFO] Changes detected - recompiling the module! :dependency [INFO] Compiling 1 source file with javac [debug target 21] to target\test-classes [INFO] [INFO] --- surefire:3.1.2:test (default-test) @ ncbiBlast --- [INFO] Tests are skipped. [INFO] [INFO] --- bundle:5.1.9:bundle (default-bundle) @ ncbiBlast --- [INFO] Building bundle: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\NCBIBlast\target\ncbiBlast-10.0.0.jar [INFO] Writing manifest: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\NCBIBlast\target\classes\META-INF\MANIFEST.MF [INFO] [INFO] --- install:3.1.1:install (default-install) @ ncbiBlast --- [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\NCBIBlast\pom.xml to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\ncbiBlast\10.0.0\ncbiBlast-10.0.0.pom [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\NCBIBlast\target\ncbiBlast-10.0.0.jar to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\ncbiBlast\10.0.0\ncbiBlast-10.0.0.jar [INFO] [INFO] --- bundle:5.1.9:install (default-install) @ ncbiBlast --- [INFO] Installing org/lorainelab/igb/ncbiBlast/10.0.0/ncbiBlast-10.0.0.jar [INFO] Writing OBR metadata [INFO] [INFO] --- dependency:3.5.0:copy (copy) @ ncbiBlast --- [INFO] Configured Artifact: org.lorainelab.igb:ncbiBlast:10.0.0:jar [INFO] Copying ncbiBlast-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\ncbiBlast-10.0.0.jar [INFO] [INFO] ------------------< org.lorainelab.igb:propertyView >------------------- [INFO] Building Plugin - Selection Info tab 10.0.0 [37/56] [INFO] from plugins\PropertyView\pom.xml [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- clean:3.3.2:clean (default-clean) @ propertyView --- [INFO] Deleting C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\PropertyView\target [INFO] [INFO] --- resources:3.3.1:resources (default-resources) @ propertyView --- [INFO] Copying 0 resource from src\main\java to target\classes [INFO] Copying 1 resource from src\main\resources to target\classes [INFO] [INFO] --- compiler:3.11.0:compile (default-compile) @ propertyView --- [INFO] Changes detected - recompiling the module! :dependency [INFO] Compiling 3 source files with javac [debug target 21] to target\classes [INFO] [INFO] --- resources:3.3.1:testResources (default-testResources) @ propertyView --- [INFO] Copying 1 resource from src\test\resources to target\test-classes [INFO] [INFO] --- compiler:3.11.0:testCompile (default-testCompile) @ propertyView --- [INFO] No sources to compile [INFO] [INFO] --- surefire:3.1.2:test (default-test) @ propertyView --- [INFO] Tests are skipped. [INFO] [INFO] --- bundle:5.1.9:bundle (default-bundle) @ propertyView --- [WARNING] Bundle org.lorainelab.igb:propertyView:bundle:10.0.0 : Service-Component is normally generated by bnd. If you want to point at specific component XML files (wildcards are allowed, see findEntries) make sure it ends in '.xml'. Found * [INFO] Building bundle: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\PropertyView\target\propertyView-10.0.0.jar [INFO] Writing manifest: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\PropertyView\target\classes\META-INF\MANIFEST.MF [INFO] [INFO] --- install:3.1.1:install (default-install) @ propertyView --- [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\PropertyView\pom.xml to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\propertyView\10.0.0\propertyView-10.0.0.pom [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\PropertyView\target\propertyView-10.0.0.jar to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\propertyView\10.0.0\propertyView-10.0.0.jar [INFO] [INFO] --- bundle:5.1.9:install (default-install) @ propertyView --- [INFO] Installing org/lorainelab/igb/propertyView/10.0.0/propertyView-10.0.0.jar [INFO] Writing OBR metadata [INFO] [INFO] --- dependency:3.5.0:copy (copy) @ propertyView --- [INFO] Configured Artifact: org.lorainelab.igb:propertyView:10.0.0:jar [INFO] Copying propertyView-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\propertyView-10.0.0.jar [INFO] [INFO] ----------------< org.lorainelab.igb:restrictionSites >----------------- [INFO] Building Plugin - Restriction Sites tab 10.0.0 [38/56] [INFO] from plugins\RestrictionSites\pom.xml [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- clean:3.3.2:clean (default-clean) @ restrictionSites --- [INFO] Deleting C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\RestrictionSites\target [INFO] [INFO] --- resources:3.3.1:resources (default-resources) @ restrictionSites --- [INFO] Copying 0 resource from src\main\java to target\classes [INFO] Copying 2 resources from src\main\resources to target\classes [INFO] [INFO] --- compiler:3.11.0:compile (default-compile) @ restrictionSites --- [INFO] Changes detected - recompiling the module! :dependency [INFO] Compiling 1 source file with javac [debug target 21] to target\classes [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/plugins/RestrictionSites/src/main/java/com/affymetrix/igb/restrictions/RestrictionControlView.java: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\RestrictionSites\src\main\java\com\affymetrix\igb\restrictions\RestrictionControlView.java uses unchecked or unsafe operations. [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/plugins/RestrictionSites/src/main/java/com/affymetrix/igb/restrictions/RestrictionControlView.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- resources:3.3.1:testResources (default-testResources) @ restrictionSites --- [INFO] Copying 1 resource from src\test\resources to target\test-classes [INFO] [INFO] --- compiler:3.11.0:testCompile (default-testCompile) @ restrictionSites --- [INFO] No sources to compile [INFO] [INFO] --- surefire:3.1.2:test (default-test) @ restrictionSites --- [INFO] Tests are skipped. [INFO] [INFO] --- bundle:5.1.9:bundle (default-bundle) @ restrictionSites --- [WARNING] Bundle org.lorainelab.igb:restrictionSites:bundle:10.0.0 : Service-Component is normally generated by bnd. If you want to point at specific component XML files (wildcards are allowed, see findEntries) make sure it ends in '.xml'. Found * [INFO] Building bundle: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\RestrictionSites\target\restrictionSites-10.0.0.jar [INFO] Writing manifest: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\RestrictionSites\target\classes\META-INF\MANIFEST.MF [INFO] [INFO] --- install:3.1.1:install (default-install) @ restrictionSites --- [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\RestrictionSites\pom.xml to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\restrictionSites\10.0.0\restrictionSites-10.0.0.pom [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\RestrictionSites\target\restrictionSites-10.0.0.jar to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\restrictionSites\10.0.0\restrictionSites-10.0.0.jar [INFO] [INFO] --- bundle:5.1.9:install (default-install) @ restrictionSites --- [INFO] Installing org/lorainelab/igb/restrictionSites/10.0.0/restrictionSites-10.0.0.jar [INFO] Writing OBR metadata [INFO] [INFO] --- dependency:3.5.0:copy (copy) @ restrictionSites --- [INFO] Configured Artifact: org.lorainelab.igb:restrictionSites:10.0.0:jar [INFO] Copying restrictionSites-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\restrictionSites-10.0.0.jar [INFO] [INFO] --------------< org.lorainelab.igb:searchModelIdOrProps >--------------- [INFO] Building Plugin - Search Id or Props 10.0.0 [39/56] [INFO] from plugins\SearchModeIdOrProps\pom.xml [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- clean:3.3.2:clean (default-clean) @ searchModelIdOrProps --- [INFO] Deleting C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\SearchModeIdOrProps\target [INFO] [INFO] --- resources:3.3.1:resources (default-resources) @ searchModelIdOrProps --- [INFO] Copying 0 resource from src\main\java to target\classes [INFO] Copying 1 resource from src\main\resources to target\classes [INFO] [INFO] --- compiler:3.11.0:compile (default-compile) @ searchModelIdOrProps --- [INFO] Changes detected - recompiling the module! :dependency [INFO] Compiling 4 source files with javac [debug target 21] to target\classes [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/plugins/SearchModeIdOrProps/src/main/java/com/affymetrix/igb/searchmodeidorprops/SearchModeIDOrProps.java: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\SearchModeIdOrProps\src\main\java\com\affymetrix\igb\searchmodeidorprops\SearchModeIDOrProps.java uses or overrides a deprecated API. [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/plugins/SearchModeIdOrProps/src/main/java/com/affymetrix/igb/searchmodeidorprops/SearchModeIDOrProps.java: Recompile with -Xlint:deprecation for details. [INFO] [INFO] --- resources:3.3.1:testResources (default-testResources) @ searchModelIdOrProps --- [INFO] Copying 1 resource from src\test\resources to target\test-classes [INFO] [INFO] --- compiler:3.11.0:testCompile (default-testCompile) @ searchModelIdOrProps --- [INFO] No sources to compile [INFO] [INFO] --- surefire:3.1.2:test (default-test) @ searchModelIdOrProps --- [INFO] Tests are skipped. [INFO] [INFO] --- bundle:5.1.9:bundle (default-bundle) @ searchModelIdOrProps --- [WARNING] Bundle org.lorainelab.igb:searchModelIdOrProps:bundle:10.0.0 : Service-Component is normally generated by bnd. If you want to point at specific component XML files (wildcards are allowed, see findEntries) make sure it ends in '.xml'. Found * [INFO] Building bundle: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\SearchModeIdOrProps\target\searchModelIdOrProps-10.0.0.jar [INFO] Writing manifest: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\SearchModeIdOrProps\target\classes\META-INF\MANIFEST.MF [INFO] [INFO] --- install:3.1.1:install (default-install) @ searchModelIdOrProps --- [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\SearchModeIdOrProps\pom.xml to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\searchModelIdOrProps\10.0.0\searchModelIdOrProps-10.0.0.pom [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\SearchModeIdOrProps\target\searchModelIdOrProps-10.0.0.jar to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\searchModelIdOrProps\10.0.0\searchModelIdOrProps-10.0.0.jar [INFO] [INFO] --- bundle:5.1.9:install (default-install) @ searchModelIdOrProps --- [INFO] Installing org/lorainelab/igb/searchModelIdOrProps/10.0.0/searchModelIdOrProps-10.0.0.jar [INFO] Writing OBR metadata [INFO] [INFO] --- dependency:3.5.0:copy (copy) @ searchModelIdOrProps --- [INFO] Configured Artifact: org.lorainelab.igb:searchModelIdOrProps:10.0.0:jar [INFO] Copying searchModelIdOrProps-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\searchModelIdOrProps-10.0.0.jar [INFO] [INFO] -------------------< org.lorainelab.igb:searchView >-------------------- [INFO] Building Plugin - Advanced Search Tab 10.0.0 [40/56] [INFO] from plugins\SearchView\pom.xml [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- clean:3.3.2:clean (default-clean) @ searchView --- [INFO] Deleting C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\SearchView\target [INFO] [INFO] --- resources:3.3.1:resources (default-resources) @ searchView --- [INFO] Copying 0 resource from src\main\java to target\classes [INFO] Copying 2 resources from src\main\resources to target\classes [INFO] [INFO] --- compiler:3.11.0:compile (default-compile) @ searchView --- [INFO] Changes detected - recompiling the module! :dependency [INFO] Compiling 5 source files with javac [debug target 21] to target\classes [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/plugins/SearchView/src/main/java/com/affymetrix/igb/search/SearchView.java: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\SearchView\src\main\java\com\affymetrix\igb\search\SearchView.java uses unchecked or unsafe operations. [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/plugins/SearchView/src/main/java/com/affymetrix/igb/search/SearchView.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- resources:3.3.1:testResources (default-testResources) @ searchView --- [INFO] Copying 1 resource from src\test\resources to target\test-classes [INFO] [INFO] --- compiler:3.11.0:testCompile (default-testCompile) @ searchView --- [INFO] No sources to compile [INFO] [INFO] --- surefire:3.1.2:test (default-test) @ searchView --- [INFO] Tests are skipped. [INFO] [INFO] --- bundle:5.1.9:bundle (default-bundle) @ searchView --- [WARNING] Bundle org.lorainelab.igb:searchView:bundle:10.0.0 : Service-Component is normally generated by bnd. If you want to point at specific component XML files (wildcards are allowed, see findEntries) make sure it ends in '.xml'. Found * [INFO] Building bundle: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\SearchView\target\searchView-10.0.0.jar [INFO] Writing manifest: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\SearchView\target\classes\META-INF\MANIFEST.MF [INFO] [INFO] --- install:3.1.1:install (default-install) @ searchView --- [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\SearchView\pom.xml to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\searchView\10.0.0\searchView-10.0.0.pom [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\SearchView\target\searchView-10.0.0.jar to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\searchView\10.0.0\searchView-10.0.0.jar [INFO] [INFO] --- bundle:5.1.9:install (default-install) @ searchView --- [INFO] Installing org/lorainelab/igb/searchView/10.0.0/searchView-10.0.0.jar [INFO] Writing OBR metadata [INFO] [INFO] --- dependency:3.5.0:copy (copy) @ searchView --- [INFO] Configured Artifact: org.lorainelab.igb:searchView:10.0.0:jar [INFO] Copying searchView-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\searchView-10.0.0.jar [INFO] [INFO] -----------------< org.lorainelab.igb:sequenceViewer >------------------ [INFO] Building Plugin - Sequence Viewer GUI 10.0.0 [41/56] [INFO] from plugins\SequenceViewer\pom.xml [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- clean:3.3.2:clean (default-clean) @ sequenceViewer --- [INFO] Deleting C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\SequenceViewer\target [INFO] [INFO] --- resources:3.3.1:resources (default-resources) @ sequenceViewer --- [INFO] Copying 0 resource from src\main\java to target\classes [INFO] Copying 3 resources from src\main\resources to target\classes [INFO] [INFO] --- compiler:3.11.0:compile (default-compile) @ sequenceViewer --- [INFO] Changes detected - recompiling the module! :dependency [INFO] Compiling 11 source files with javac [debug target 1.8] to target\classes [WARNING] bootstrap class path not set in conjunction with -source 8 [WARNING] source value 8 is obsolete and will be removed in a future release [WARNING] target value 8 is obsolete and will be removed in a future release [WARNING] To suppress warnings about obsolete options, use -Xlint:-options. [INFO] [INFO] --- resources:3.3.1:testResources (default-testResources) @ sequenceViewer --- [INFO] Copying 1 resource from src\test\resources to target\test-classes [INFO] [INFO] --- compiler:3.11.0:testCompile (default-testCompile) @ sequenceViewer --- [INFO] No sources to compile [INFO] [INFO] --- surefire:3.1.2:test (default-test) @ sequenceViewer --- [INFO] Tests are skipped. [INFO] [INFO] --- bundle:5.1.9:bundle (default-bundle) @ sequenceViewer --- [WARNING] Bundle org.lorainelab.igb:sequenceViewer:bundle:10.0.0 : Service-Component is normally generated by bnd. If you want to point at specific component XML files (wildcards are allowed, see findEntries) make sure it ends in '.xml'. Found * [INFO] Building bundle: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\SequenceViewer\target\sequenceViewer-10.0.0.jar [INFO] Writing manifest: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\SequenceViewer\target\classes\META-INF\MANIFEST.MF [INFO] [INFO] --- install:3.1.1:install (default-install) @ sequenceViewer --- [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\SequenceViewer\pom.xml to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\sequenceViewer\10.0.0\sequenceViewer-10.0.0.pom [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\SequenceViewer\target\sequenceViewer-10.0.0.jar to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\sequenceViewer\10.0.0\sequenceViewer-10.0.0.jar [INFO] [INFO] --- bundle:5.1.9:install (default-install) @ sequenceViewer --- [INFO] Installing org/lorainelab/igb/sequenceViewer/10.0.0/sequenceViewer-10.0.0.jar [INFO] Writing OBR metadata [INFO] [INFO] --- dependency:3.5.0:copy (copy) @ sequenceViewer --- [INFO] Configured Artifact: org.lorainelab.igb:sequenceViewer:10.0.0:jar [INFO] Copying sequenceViewer-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\sequenceViewer-10.0.0.jar [INFO] [INFO] ---------------------< org.lorainelab.igb:survey >---------------------- [INFO] Building Plugin - Survey GUI 10.0.0 [42/56] [INFO] from plugins\Survey\pom.xml [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- clean:3.3.2:clean (default-clean) @ survey --- [INFO] Deleting C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\Survey\target [INFO] [INFO] --- resources:3.3.1:resources (default-resources) @ survey --- [INFO] Copying 0 resource from src\main\java to target\classes [INFO] Copying 2 resources from src\main\resources to target\classes [INFO] [INFO] --- compiler:3.11.0:compile (default-compile) @ survey --- [INFO] Changes detected - recompiling the module! :dependency [INFO] Compiling 5 source files with javac [debug target 21] to target\classes [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/plugins/Survey/src/main/java/com/affymetrix/igb/survey/Activator.java: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\Survey\src\main\java\com\affymetrix\igb\survey\Activator.java uses or overrides a deprecated API. [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/plugins/Survey/src/main/java/com/affymetrix/igb/survey/Activator.java: Recompile with -Xlint:deprecation for details. [INFO] [INFO] --- resources:3.3.1:testResources (default-testResources) @ survey --- [INFO] Copying 1 resource from src\test\resources to target\test-classes [INFO] [INFO] --- compiler:3.11.0:testCompile (default-testCompile) @ survey --- [INFO] No sources to compile [INFO] [INFO] --- surefire:3.1.2:test (default-test) @ survey --- [INFO] Tests are skipped. [INFO] [INFO] --- bundle:5.1.9:bundle (default-bundle) @ survey --- [INFO] Building bundle: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\Survey\target\survey-10.0.0.jar [INFO] Writing manifest: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\Survey\target\classes\META-INF\MANIFEST.MF [INFO] [INFO] --- install:3.1.1:install (default-install) @ survey --- [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\Survey\pom.xml to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\survey\10.0.0\survey-10.0.0.pom [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\Survey\target\survey-10.0.0.jar to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\survey\10.0.0\survey-10.0.0.jar [INFO] [INFO] --- bundle:5.1.9:install (default-install) @ survey --- [INFO] Installing org/lorainelab/igb/survey/10.0.0/survey-10.0.0.jar [INFO] Writing OBR metadata [INFO] [INFO] --- dependency:3.5.0:copy (copy) @ survey --- [INFO] Configured Artifact: org.lorainelab.igb:survey:10.0.0:jar [INFO] Copying survey-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\survey-10.0.0.jar [INFO] [INFO] ------------------< org.lorainelab.igb:thresholding >------------------- [INFO] Building Plugin - Graph thresholding visual analytics 10.0.0 [43/56] [INFO] from plugins\Thresholding\pom.xml [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- clean:3.3.2:clean (default-clean) @ thresholding --- [INFO] Deleting C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\Thresholding\target [INFO] [INFO] --- resources:3.3.1:resources (default-resources) @ thresholding --- [INFO] Copying 0 resource from src\main\java to target\classes [INFO] Copying 2 resources from src\main\resources to target\classes [INFO] [INFO] --- compiler:3.11.0:compile (default-compile) @ thresholding --- [INFO] Changes detected - recompiling the module! :dependency [INFO] Compiling 8 source files with javac [debug target 21] to target\classes [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/plugins/Thresholding/src/main/java/com/affymetrix/igb/thresholding/GraphScoreThreshSetter.java: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\Thresholding\src\main\java\com\affymetrix\igb\thresholding\GraphScoreThreshSetter.java uses unchecked or unsafe operations. [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/plugins/Thresholding/src/main/java/com/affymetrix/igb/thresholding/GraphScoreThreshSetter.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- resources:3.3.1:testResources (default-testResources) @ thresholding --- [INFO] Copying 1 resource from src\test\resources to target\test-classes [INFO] [INFO] --- compiler:3.11.0:testCompile (default-testCompile) @ thresholding --- [INFO] No sources to compile [INFO] [INFO] --- surefire:3.1.2:test (default-test) @ thresholding --- [INFO] Tests are skipped. [INFO] [INFO] --- bundle:5.1.9:bundle (default-bundle) @ thresholding --- [WARNING] Bundle org.lorainelab.igb:thresholding:bundle:10.0.0 : Service-Component is normally generated by bnd. If you want to point at specific component XML files (wildcards are allowed, see findEntries) make sure it ends in '.xml'. Found * [INFO] Building bundle: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\Thresholding\target\thresholding-10.0.0.jar [INFO] Writing manifest: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\Thresholding\target\classes\META-INF\MANIFEST.MF [INFO] [INFO] --- install:3.1.1:install (default-install) @ thresholding --- [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\Thresholding\pom.xml to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\thresholding\10.0.0\thresholding-10.0.0.pom [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\Thresholding\target\thresholding-10.0.0.jar to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\thresholding\10.0.0\thresholding-10.0.0.jar [INFO] [INFO] --- bundle:5.1.9:install (default-install) @ thresholding --- [INFO] Installing org/lorainelab/igb/thresholding/10.0.0/thresholding-10.0.0.jar [INFO] Writing OBR metadata [INFO] [INFO] --- dependency:3.5.0:copy (copy) @ thresholding --- [INFO] Configured Artifact: org.lorainelab.igb:thresholding:10.0.0:jar [INFO] Copying thresholding-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\thresholding-10.0.0.jar [INFO] [INFO] ---------------------< org.lorainelab.igb:update >---------------------- [INFO] Building Plugin - Update 10.0.0 [44/56] [INFO] from plugins\Update\pom.xml [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- clean:3.3.2:clean (default-clean) @ update --- [INFO] Deleting C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\Update\target [INFO] [INFO] --- resources:3.3.1:resources (default-resources) @ update --- [INFO] Copying 0 resource from src\main\java to target\classes [INFO] Copying 2 resources from src\main\resources to target\classes [INFO] [INFO] --- compiler:3.11.0:compile (default-compile) @ update --- [INFO] Changes detected - recompiling the module! :dependency [INFO] Compiling 5 source files with javac [debug target 21] to target\classes [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/plugins/Update/src/main/java/com/affymetrix/igb/update/Activator.java: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\Update\src\main\java\com\affymetrix\igb\update\Activator.java uses or overrides a deprecated API. [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/plugins/Update/src/main/java/com/affymetrix/igb/update/Activator.java: Recompile with -Xlint:deprecation for details. [INFO] [INFO] --- resources:3.3.1:testResources (default-testResources) @ update --- [INFO] Copying 1 resource from src\test\resources to target\test-classes [INFO] [INFO] --- compiler:3.11.0:testCompile (default-testCompile) @ update --- [INFO] No sources to compile [INFO] [INFO] --- surefire:3.1.2:test (default-test) @ update --- [INFO] Tests are skipped. [INFO] [INFO] --- bundle:5.1.9:bundle (default-bundle) @ update --- [INFO] Building bundle: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\Update\target\update-10.0.0.jar [INFO] Writing manifest: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\Update\target\classes\META-INF\MANIFEST.MF [INFO] [INFO] --- install:3.1.1:install (default-install) @ update --- [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\Update\pom.xml to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\update\10.0.0\update-10.0.0.pom [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\Update\target\update-10.0.0.jar to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\update\10.0.0\update-10.0.0.jar [INFO] [INFO] --- bundle:5.1.9:install (default-install) @ update --- [INFO] Installing org/lorainelab/igb/update/10.0.0/update-10.0.0.jar [INFO] Writing OBR metadata [INFO] [INFO] --- dependency:3.5.0:copy (copy) @ update --- [INFO] Configured Artifact: org.lorainelab.igb:update:10.0.0:jar [INFO] Copying update-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\update-10.0.0.jar [INFO] [INFO] -----------------< org.lorainelab.igb:plugins-manager >----------------- [INFO] Building Plugin - App Manager GUI 10.0.0 [45/56] [INFO] from plugins\plugin-manager\pom.xml [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- clean:3.3.2:clean (default-clean) @ plugins-manager --- [INFO] Deleting C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\plugin-manager\target [INFO] [INFO] --- resources:3.3.1:resources (default-resources) @ plugins-manager --- [INFO] Copying 0 resource from src\main\java to target\classes [INFO] Copying 32 resources from src\main\resources to target\classes [INFO] [INFO] --- compiler:3.11.0:compile (default-compile) @ plugins-manager --- [INFO] Changes detected - recompiling the module! :dependency [INFO] Compiling 24 source files with javac [debug target 21] to target\classes [WARNING] unknown enum constant jakarta.xml.bind.annotation.XmlAccessType.FIELD reason: class file for jakarta.xml.bind.annotation.XmlAccessType not found [WARNING] unknown enum constant jakarta.xml.bind.annotation.XmlAccessType.FIELD [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/plugins/plugin-manager/src/main/java/org/lorainelab/igb/plugin/manager/repos/PluginRepositoryList.java: Some input files use or override a deprecated API. [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/plugins/plugin-manager/src/main/java/org/lorainelab/igb/plugin/manager/repos/PluginRepositoryList.java: Recompile with -Xlint:deprecation for details. [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/plugins/plugin-manager/src/main/java/org/lorainelab/igb/plugin/manager/AppManagerFxPanel.java: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\plugin-manager\src\main\java\org\lorainelab\igb\plugin\manager\AppManagerFxPanel.java uses unchecked or unsafe operations. [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/plugins/plugin-manager/src/main/java/org/lorainelab/igb/plugin/manager/AppManagerFxPanel.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- resources:3.3.1:testResources (default-testResources) @ plugins-manager --- [INFO] Copying 2 resources from src\test\resources to target\test-classes [INFO] [INFO] --- compiler:3.11.0:testCompile (default-testCompile) @ plugins-manager --- [INFO] Changes detected - recompiling the module! :dependency [INFO] Compiling 1 source file with javac [debug target 21] to target\test-classes [INFO] [INFO] --- surefire:3.1.2:test (default-test) @ plugins-manager --- [INFO] Tests are skipped. [INFO] [INFO] --- bundle:5.1.9:bundle (default-bundle) @ plugins-manager --- [WARNING] Bundle org.lorainelab.igb:plugins-manager:bundle:10.0.0 : Service-Component is normally generated by bnd. If you want to point at specific component XML files (wildcards are allowed, see findEntries) make sure it ends in '.xml'. Found * [INFO] Building bundle: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\plugin-manager\target\plugins-manager-10.0.0.jar [INFO] Writing manifest: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\plugin-manager\target\classes\META-INF\MANIFEST.MF [INFO] [INFO] --- install:3.1.1:install (default-install) @ plugins-manager --- [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\plugin-manager\pom.xml to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\plugins-manager\10.0.0\plugins-manager-10.0.0.pom [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\plugin-manager\target\plugins-manager-10.0.0.jar to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\plugins-manager\10.0.0\plugins-manager-10.0.0.jar [INFO] [INFO] --- bundle:5.1.9:install (default-install) @ plugins-manager --- [INFO] Installing org/lorainelab/igb/plugins-manager/10.0.0/plugins-manager-10.0.0.jar [INFO] Writing OBR metadata [INFO] [INFO] --- dependency:3.5.0:copy (copy) @ plugins-manager --- [INFO] Configured Artifact: org.lorainelab.igb:plugins-manager:10.0.0:jar [INFO] Copying plugins-manager-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\plugins-manager-10.0.0.jar [INFO] [INFO] ------------< org.lorainelab.igb:paired-data-preprocessor >------------- [INFO] Building Plugin - Paired-end Read Preprocessor 10.0.0 [46/56] [INFO] from plugins\PairedEndDataPreprocessor\pom.xml [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- clean:3.3.2:clean (default-clean) @ paired-data-preprocessor --- [INFO] Deleting C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\PairedEndDataPreprocessor\target [INFO] Deleting C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\dynamic (includes = [paired-data-preprocessor-10.0.0.jar], excludes = []) [INFO] [INFO] --- resources:3.3.1:resources (default-resources) @ paired-data-preprocessor --- [INFO] Copying 0 resource from src\main\java to target\classes [INFO] skip non existing resourceDirectory C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\PairedEndDataPreprocessor\src\main\resources [INFO] [INFO] --- compiler:3.11.0:compile (default-compile) @ paired-data-preprocessor --- [INFO] Changes detected - recompiling the module! :dependency [INFO] Compiling 1 source file with javac [debug target 21] to target\classes [INFO] [INFO] --- resources:3.3.1:testResources (default-testResources) @ paired-data-preprocessor --- [INFO] skip non existing resourceDirectory C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\PairedEndDataPreprocessor\src\test\resources [INFO] [INFO] --- compiler:3.11.0:testCompile (default-testCompile) @ paired-data-preprocessor --- [INFO] No sources to compile [INFO] [INFO] --- surefire:3.1.2:test (default-test) @ paired-data-preprocessor --- [INFO] Tests are skipped. [INFO] [INFO] --- bundle:5.1.9:bundle (default-bundle) @ paired-data-preprocessor --- [WARNING] Bundle org.lorainelab.igb:paired-data-preprocessor:bundle:10.0.0 : Service-Component is normally generated by bnd. If you want to point at specific component XML files (wildcards are allowed, see findEntries) make sure it ends in '.xml'. Found * [INFO] Building bundle: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\PairedEndDataPreprocessor\target\paired-data-preprocessor-10.0.0.jar [INFO] Writing manifest: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\PairedEndDataPreprocessor\target\classes\META-INF\MANIFEST.MF [INFO] [INFO] --- install:3.1.1:install (default-install) @ paired-data-preprocessor --- [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\PairedEndDataPreprocessor\pom.xml to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\paired-data-preprocessor\10.0.0\paired-data-preprocessor-10.0.0.pom [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\PairedEndDataPreprocessor\target\paired-data-preprocessor-10.0.0.jar to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\paired-data-preprocessor\10.0.0\paired-data-preprocessor-10.0.0.jar [INFO] [INFO] --- bundle:5.1.9:install (default-install) @ paired-data-preprocessor --- [INFO] Installing org/lorainelab/igb/paired-data-preprocessor/10.0.0/paired-data-preprocessor-10.0.0.jar [INFO] Writing OBR metadata [INFO] [INFO] --- dependency:3.5.0:copy (copy) @ paired-data-preprocessor --- [INFO] Configured Artifact: org.lorainelab.igb:paired-data-preprocessor:10.0.0:jar [INFO] Copying paired-data-preprocessor-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\dynamic\paired-data-preprocessor-10.0.0.jar [INFO] [INFO] -----------------< org.lorainelab.igb:session-manager >----------------- [INFO] Building Plugin - Save Session Manager 10.0.0 [47/56] [INFO] from plugins\session-manager\pom.xml [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- clean:3.3.2:clean (default-clean) @ session-manager --- [INFO] Deleting C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\session-manager\target [INFO] [INFO] --- resources:3.3.1:resources (default-resources) @ session-manager --- [INFO] Copying 0 resource from src\main\java to target\classes [INFO] Copying 3 resources from src\main\resources to target\classes [INFO] [INFO] --- compiler:3.11.0:compile (default-compile) @ session-manager --- [INFO] Changes detected - recompiling the module! :dependency [INFO] Compiling 2 source files with javac [debug target 21] to target\classes [INFO] [INFO] --- resources:3.3.1:testResources (default-testResources) @ session-manager --- [INFO] skip non existing resourceDirectory C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\session-manager\src\test\resources [INFO] [INFO] --- compiler:3.11.0:testCompile (default-testCompile) @ session-manager --- [INFO] No sources to compile [INFO] [INFO] --- surefire:3.1.2:test (default-test) @ session-manager --- [INFO] Tests are skipped. [INFO] [INFO] --- bundle:5.1.9:bundle (default-bundle) @ session-manager --- [WARNING] Bundle org.lorainelab.igb:session-manager:bundle:10.0.0 : Service-Component is normally generated by bnd. If you want to point at specific component XML files (wildcards are allowed, see findEntries) make sure it ends in '.xml'. Found * [INFO] Building bundle: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\session-manager\target\session-manager-10.0.0.jar [INFO] Writing manifest: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\session-manager\target\classes\META-INF\MANIFEST.MF [INFO] [INFO] --- install:3.1.1:install (default-install) @ session-manager --- [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\session-manager\pom.xml to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\session-manager\10.0.0\session-manager-10.0.0.pom [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\session-manager\target\session-manager-10.0.0.jar to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\session-manager\10.0.0\session-manager-10.0.0.jar [INFO] [INFO] --- bundle:5.1.9:install (default-install) @ session-manager --- [INFO] Installing org/lorainelab/igb/session-manager/10.0.0/session-manager-10.0.0.jar [INFO] Writing OBR metadata [INFO] [INFO] --- dependency:3.5.0:copy (copy) @ session-manager --- [INFO] Configured Artifact: org.lorainelab.igb:session-manager:10.0.0:jar [INFO] Copying session-manager-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\session-manager-10.0.0.jar [INFO] [INFO] ---------------< org.lorainelab.igb:keybinding-registry >--------------- [INFO] Building Plugin - Toolbar Preferences GUI 10.0.0 [48/56] [INFO] from plugins\Keybinding-registry\pom.xml [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- clean:3.3.2:clean (default-clean) @ keybinding-registry --- [INFO] Deleting C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\Keybinding-registry\target [INFO] [INFO] --- resources:3.3.1:resources (default-resources) @ keybinding-registry --- [INFO] Copying 0 resource from src\main\java to target\classes [INFO] Copying 2 resources from src\main\resources to target\classes [INFO] [INFO] --- compiler:3.11.0:compile (default-compile) @ keybinding-registry --- [INFO] Changes detected - recompiling the module! :dependency [INFO] Compiling 3 source files with javac [debug target 21] to target\classes [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/plugins/Keybinding-registry/src/main/java/org/lorainelab/igb/keystrokes/KeyStrokesView.java: Some input files use or override a deprecated API. [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/plugins/Keybinding-registry/src/main/java/org/lorainelab/igb/keystrokes/KeyStrokesView.java: Recompile with -Xlint:deprecation for details. [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/plugins/Keybinding-registry/src/main/java/org/lorainelab/igb/keystrokes/model/KeyStrokeViewTableModel.java: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\Keybinding-registry\src\main\java\org\lorainelab\igb\keystrokes\model\KeyStrokeViewTableModel.java uses unchecked or unsafe operations. [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/plugins/Keybinding-registry/src/main/java/org/lorainelab/igb/keystrokes/model/KeyStrokeViewTableModel.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- resources:3.3.1:testResources (default-testResources) @ keybinding-registry --- [INFO] skip non existing resourceDirectory C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\Keybinding-registry\src\test\resources [INFO] [INFO] --- compiler:3.11.0:testCompile (default-testCompile) @ keybinding-registry --- [INFO] Changes detected - recompiling the module! :dependency [INFO] [INFO] --- surefire:3.1.2:test (default-test) @ keybinding-registry --- [INFO] Tests are skipped. [INFO] [INFO] --- bundle:5.1.9:bundle (default-bundle) @ keybinding-registry --- [WARNING] Bundle org.lorainelab.igb:keybinding-registry:bundle:10.0.0 : Service-Component is normally generated by bnd. If you want to point at specific component XML files (wildcards are allowed, see findEntries) make sure it ends in '.xml'. Found * [INFO] Building bundle: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\Keybinding-registry\target\keybinding-registry-10.0.0.jar [INFO] Writing manifest: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\Keybinding-registry\target\classes\META-INF\MANIFEST.MF [INFO] [INFO] --- install:3.1.1:install (default-install) @ keybinding-registry --- [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\Keybinding-registry\pom.xml to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\keybinding-registry\10.0.0\keybinding-registry-10.0.0.pom [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\Keybinding-registry\target\keybinding-registry-10.0.0.jar to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\keybinding-registry\10.0.0\keybinding-registry-10.0.0.jar [INFO] [INFO] --- bundle:5.1.9:install (default-install) @ keybinding-registry --- [INFO] Installing org/lorainelab/igb/keybinding-registry/10.0.0/keybinding-registry-10.0.0.jar [INFO] Writing OBR metadata [INFO] [INFO] --- dependency:3.5.0:copy (copy) @ keybinding-registry --- [INFO] Configured Artifact: org.lorainelab.igb:keybinding-registry:10.0.0:jar [INFO] Copying keybinding-registry-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\keybinding-registry-10.0.0.jar [INFO] [INFO] --------------------< org.lorainelab.igb:feedback >--------------------- [INFO] Building Plugin - Feedback 10.0.0 [49/56] [INFO] from plugins\feedback\pom.xml [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- clean:3.3.2:clean (default-clean) @ feedback --- [INFO] Deleting C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\feedback\target [INFO] Deleting C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\dynamic (includes = [feedback-10.0.0.jar], excludes = []) [INFO] [INFO] --- resources:3.3.1:resources (default-resources) @ feedback --- [INFO] Copying 0 resource from src\main\java to target\classes [INFO] Copying 5 resources from src\main\resources to target\classes [INFO] [INFO] --- compiler:3.11.0:compile (default-compile) @ feedback --- [INFO] Changes detected - recompiling the module! :dependency [INFO] Compiling 2 source files with javac [debug target 21] to target\classes [INFO] [INFO] --- resources:3.3.1:testResources (default-testResources) @ feedback --- [INFO] skip non existing resourceDirectory C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\feedback\src\test\resources [INFO] [INFO] --- compiler:3.11.0:testCompile (default-testCompile) @ feedback --- [INFO] No sources to compile [INFO] [INFO] --- surefire:3.1.2:test (default-test) @ feedback --- [INFO] Tests are skipped. [INFO] [INFO] --- bundle:5.1.9:bundle (default-bundle) @ feedback --- [WARNING] Bundle org.lorainelab.igb:feedback:bundle:10.0.0 : Service-Component is normally generated by bnd. If you want to point at specific component XML files (wildcards are allowed, see findEntries) make sure it ends in '.xml'. Found * [INFO] Building bundle: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\feedback\target\feedback-10.0.0.jar [INFO] Writing manifest: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\feedback\target\classes\META-INF\MANIFEST.MF [INFO] [INFO] --- install:3.1.1:install (default-install) @ feedback --- [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\feedback\pom.xml to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\feedback\10.0.0\feedback-10.0.0.pom [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\feedback\target\feedback-10.0.0.jar to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\feedback\10.0.0\feedback-10.0.0.jar [INFO] [INFO] --- bundle:5.1.9:install (default-install) @ feedback --- [INFO] Installing org/lorainelab/igb/feedback/10.0.0/feedback-10.0.0.jar [INFO] Writing OBR metadata [INFO] [INFO] --- dependency:3.5.0:copy (copy) @ feedback --- [INFO] Configured Artifact: org.lorainelab.igb:feedback:10.0.0:jar [INFO] Copying feedback-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\dynamic\feedback-10.0.0.jar [INFO] [INFO] -------------------< org.lorainelab.igb:narrowpeak >-------------------- [INFO] Building Plugin - Narrowpeak data format handler 10.0.0 [50/56] [INFO] from plugins\narrowpeak\pom.xml [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- clean:3.3.2:clean (default-clean) @ narrowpeak --- [INFO] Deleting C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\narrowpeak\target [INFO] Deleting C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\dynamic (includes = [narrowpeak-10.0.0.jar], excludes = []) [INFO] [INFO] --- resources:3.3.1:resources (default-resources) @ narrowpeak --- [INFO] Copying 0 resource from src\main\java to target\classes [INFO] skip non existing resourceDirectory C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\narrowpeak\src\main\resources [INFO] [INFO] --- compiler:3.11.0:compile (default-compile) @ narrowpeak --- [INFO] Changes detected - recompiling the module! :dependency [INFO] Compiling 2 source files with javac [debug target 21] to target\classes [INFO] [INFO] --- resources:3.3.1:testResources (default-testResources) @ narrowpeak --- [INFO] Copying 1 resource from src\test\resources to target\test-classes [INFO] [INFO] --- compiler:3.11.0:testCompile (default-testCompile) @ narrowpeak --- [INFO] No sources to compile [INFO] [INFO] --- surefire:3.1.2:test (default-test) @ narrowpeak --- [INFO] Tests are skipped. [INFO] [INFO] --- bundle:5.1.9:bundle (default-bundle) @ narrowpeak --- [WARNING] Bundle org.lorainelab.igb:narrowpeak:bundle:10.0.0 : Service-Component is normally generated by bnd. If you want to point at specific component XML files (wildcards are allowed, see findEntries) make sure it ends in '.xml'. Found * [INFO] Building bundle: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\narrowpeak\target\narrowpeak-10.0.0.jar [INFO] Writing manifest: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\narrowpeak\target\classes\META-INF\MANIFEST.MF [INFO] [INFO] --- install:3.1.1:install (default-install) @ narrowpeak --- [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\narrowpeak\pom.xml to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\narrowpeak\10.0.0\narrowpeak-10.0.0.pom [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\narrowpeak\target\narrowpeak-10.0.0.jar to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\narrowpeak\10.0.0\narrowpeak-10.0.0.jar [INFO] [INFO] --- bundle:5.1.9:install (default-install) @ narrowpeak --- [INFO] Installing org/lorainelab/igb/narrowpeak/10.0.0/narrowpeak-10.0.0.jar [INFO] Writing OBR metadata [INFO] [INFO] --- dependency:3.5.0:copy (copy) @ narrowpeak --- [INFO] Configured Artifact: org.lorainelab.igb:narrowpeak:10.0.0:jar [INFO] Copying narrowpeak-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\dynamic\narrowpeak-10.0.0.jar [INFO] [INFO] -------------------< org.lorainelab.igb:genotyping >-------------------- [INFO] Building Plugin - File Handler - Genotyping Results 10.0.0 [51/56] [INFO] from plugins\GenotypingResults\pom.xml [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- clean:3.3.2:clean (default-clean) @ genotyping --- [INFO] Deleting C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\GenotypingResults\target [INFO] Deleting C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\dynamic (includes = [genotyping-10.0.0.jar], excludes = []) [INFO] [INFO] --- resources:3.3.1:resources (default-resources) @ genotyping --- [INFO] Copying 0 resource from src\main\java to target\classes [INFO] skip non existing resourceDirectory C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\GenotypingResults\src\main\resources [INFO] [INFO] --- compiler:3.11.0:compile (default-compile) @ genotyping --- [INFO] Changes detected - recompiling the module! :dependency [INFO] Compiling 5 source files with javac [debug target 21] to target\classes [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/plugins/GenotypingResults/src/main/java/org/lorainelab/igb/genotyping/GenotypingResultsFactory.java: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\GenotypingResults\src\main\java\org\lorainelab\igb\genotyping\GenotypingResultsFactory.java uses or overrides a deprecated API. [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/plugins/GenotypingResults/src/main/java/org/lorainelab/igb/genotyping/GenotypingResultsFactory.java: Recompile with -Xlint:deprecation for details. [INFO] [INFO] --- resources:3.3.1:testResources (default-testResources) @ genotyping --- [INFO] Copying 2 resources from src\test\resources to target\test-classes [INFO] [INFO] --- compiler:3.11.0:testCompile (default-testCompile) @ genotyping --- [INFO] Changes detected - recompiling the module! :dependency [INFO] Compiling 1 source file with javac [debug target 21] to target\test-classes [INFO] [INFO] --- surefire:3.1.2:test (default-test) @ genotyping --- [INFO] Tests are skipped. [INFO] [INFO] --- bundle:5.1.9:bundle (default-bundle) @ genotyping --- [WARNING] Bundle org.lorainelab.igb:genotyping:bundle:10.0.0 : Service-Component is normally generated by bnd. If you want to point at specific component XML files (wildcards are allowed, see findEntries) make sure it ends in '.xml'. Found * [INFO] Building bundle: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\GenotypingResults\target\genotyping-10.0.0.jar [INFO] Writing manifest: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\GenotypingResults\target\classes\META-INF\MANIFEST.MF [INFO] [INFO] --- install:3.1.1:install (default-install) @ genotyping --- [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\GenotypingResults\pom.xml to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\genotyping\10.0.0\genotyping-10.0.0.pom [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\GenotypingResults\target\genotyping-10.0.0.jar to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\genotyping\10.0.0\genotyping-10.0.0.jar [INFO] [INFO] --- bundle:5.1.9:install (default-install) @ genotyping --- [INFO] Installing org/lorainelab/igb/genotyping/10.0.0/genotyping-10.0.0.jar [INFO] Writing OBR metadata [INFO] [INFO] --- dependency:3.5.0:copy (copy) @ genotyping --- [INFO] Configured Artifact: org.lorainelab.igb:genotyping:10.0.0:jar [INFO] Copying genotyping-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\dynamic\genotyping-10.0.0.jar [INFO] [INFO] -----------------------< org.lorainelab.igb:bed >----------------------- [INFO] Building Plugin - BED file format handler 10.0.0 [52/56] [INFO] from plugins\bed\pom.xml [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- clean:3.3.2:clean (default-clean) @ bed --- [INFO] Deleting C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\bed\target [INFO] Deleting C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\dynamic (includes = [bed-10.0.0.jar], excludes = []) [INFO] [INFO] --- resources:3.3.1:resources (default-resources) @ bed --- [INFO] Copying 0 resource from src\main\java to target\classes [INFO] skip non existing resourceDirectory C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\bed\src\main\resources [INFO] [INFO] --- compiler:3.11.0:compile (default-compile) @ bed --- [INFO] Changes detected - recompiling the module! :dependency [INFO] Compiling 2 source files with javac [debug target 21] to target\classes [INFO] [INFO] --- resources:3.3.1:testResources (default-testResources) @ bed --- [INFO] Copying 4 resources from src\test\resources to target\test-classes [INFO] [INFO] --- compiler:3.11.0:testCompile (default-testCompile) @ bed --- [INFO] Changes detected - recompiling the module! :dependency [INFO] Compiling 1 source file with javac [debug target 21] to target\test-classes [INFO] [INFO] --- surefire:3.1.2:test (default-test) @ bed --- [INFO] Tests are skipped. [INFO] [INFO] --- bundle:5.1.9:bundle (default-bundle) @ bed --- [WARNING] Bundle org.lorainelab.igb:bed:bundle:10.0.0 : Service-Component is normally generated by bnd. If you want to point at specific component XML files (wildcards are allowed, see findEntries) make sure it ends in '.xml'. Found * [INFO] Building bundle: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\bed\target\bed-10.0.0.jar [INFO] Writing manifest: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\bed\target\classes\META-INF\MANIFEST.MF [INFO] [INFO] --- install:3.1.1:install (default-install) @ bed --- [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\bed\pom.xml to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\bed\10.0.0\bed-10.0.0.pom [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\bed\target\bed-10.0.0.jar to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\bed\10.0.0\bed-10.0.0.jar [INFO] [INFO] --- bundle:5.1.9:install (default-install) @ bed --- [INFO] Installing org/lorainelab/igb/bed/10.0.0/bed-10.0.0.jar [INFO] Writing OBR metadata [INFO] [INFO] --- dependency:3.5.0:copy (copy) @ bed --- [INFO] Configured Artifact: org.lorainelab.igb:bed:10.0.0:jar [INFO] Copying bed-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\dynamic\bed-10.0.0.jar [INFO] [INFO] -----------------------< org.lorainelab.igb:bam >----------------------- [INFO] Building Plugin - BAM data format handler 10.0.0 [53/56] [INFO] from plugins\bam\pom.xml [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- clean:3.3.2:clean (default-clean) @ bam --- [INFO] Deleting C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\bam\target [INFO] Deleting C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\dynamic (includes = [bam-10.0.0.jar], excludes = []) [INFO] [INFO] --- resources:3.3.1:resources (default-resources) @ bam --- [INFO] Copying 0 resource from src\main\java to target\classes [INFO] skip non existing resourceDirectory C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\bam\src\main\resources [INFO] [INFO] --- compiler:3.11.0:compile (default-compile) @ bam --- [INFO] Changes detected - recompiling the module! :dependency [INFO] Compiling 5 source files with javac [debug target 21] to target\classes [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/plugins/bam/src/main/java/org/lorainelab/igb/bam/SAM.java: Some input files use or override a deprecated API. [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/plugins/bam/src/main/java/org/lorainelab/igb/bam/SAM.java: Recompile with -Xlint:deprecation for details. [INFO] [INFO] --- resources:3.3.1:testResources (default-testResources) @ bam --- [INFO] Copying 3 resources from src\test\resources to target\test-classes [INFO] [INFO] --- compiler:3.11.0:testCompile (default-testCompile) @ bam --- [INFO] Changes detected - recompiling the module! :dependency [INFO] Compiling 2 source files with javac [debug target 21] to target\test-classes [INFO] [INFO] --- surefire:3.1.2:test (default-test) @ bam --- [INFO] Tests are skipped. [INFO] [INFO] --- bundle:5.1.9:bundle (default-bundle) @ bam --- [WARNING] Bundle org.lorainelab.igb:bam:bundle:10.0.0 : Service-Component is normally generated by bnd. If you want to point at specific component XML files (wildcards are allowed, see findEntries) make sure it ends in '.xml'. Found * [INFO] Building bundle: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\bam\target\bam-10.0.0.jar [INFO] Writing manifest: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\bam\target\classes\META-INF\MANIFEST.MF [INFO] [INFO] --- install:3.1.1:install (default-install) @ bam --- [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\bam\pom.xml to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\bam\10.0.0\bam-10.0.0.pom [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\bam\target\bam-10.0.0.jar to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\bam\10.0.0\bam-10.0.0.jar [INFO] [INFO] --- bundle:5.1.9:install (default-install) @ bam --- [INFO] Installing org/lorainelab/igb/bam/10.0.0/bam-10.0.0.jar [INFO] Writing OBR metadata [INFO] [INFO] --- dependency:3.5.0:copy (copy) @ bam --- [INFO] Configured Artifact: org.lorainelab.igb:bam:10.0.0:jar [INFO] Copying bam-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\dynamic\bam-10.0.0.jar [INFO] [INFO] -----------------------< org.lorainelab.igb:bai >----------------------- [INFO] Building Plugin - BAI index visualization handler 10.0.0 [54/56] [INFO] from plugins\bai\pom.xml [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- clean:3.3.2:clean (default-clean) @ bai --- [INFO] Deleting C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\bai\target [INFO] Deleting C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\dynamic (includes = [bai-10.0.0.jar], excludes = []) [INFO] [INFO] --- resources:3.3.1:resources (default-resources) @ bai --- [INFO] Copying 0 resource from src\main\java to target\classes [INFO] Copying 1 resource from src\main\resources to target\classes [INFO] [INFO] --- compiler:3.11.0:compile (default-compile) @ bai --- [INFO] Changes detected - recompiling the module! :dependency [INFO] Compiling 3 source files with javac [debug target 21] to target\classes [INFO] [INFO] --- resources:3.3.1:testResources (default-testResources) @ bai --- [INFO] skip non existing resourceDirectory C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\bai\src\test\resources [INFO] [INFO] --- compiler:3.11.0:testCompile (default-testCompile) @ bai --- [INFO] No sources to compile [INFO] [INFO] --- surefire:3.1.2:test (default-test) @ bai --- [INFO] Tests are skipped. [INFO] [INFO] --- bundle:5.1.9:bundle (default-bundle) @ bai --- [WARNING] Bundle org.lorainelab.igb:bai:bundle:10.0.0 : Service-Component is normally generated by bnd. If you want to point at specific component XML files (wildcards are allowed, see findEntries) make sure it ends in '.xml'. Found * [INFO] Building bundle: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\bai\target\bai-10.0.0.jar [INFO] Writing manifest: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\bai\target\classes\META-INF\MANIFEST.MF [INFO] [INFO] --- install:3.1.1:install (default-install) @ bai --- [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\bai\pom.xml to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\bai\10.0.0\bai-10.0.0.pom [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\bai\target\bai-10.0.0.jar to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\bai\10.0.0\bai-10.0.0.jar [INFO] [INFO] --- bundle:5.1.9:install (default-install) @ bai --- [INFO] Installing org/lorainelab/igb/bai/10.0.0/bai-10.0.0.jar [INFO] Writing OBR metadata [INFO] [INFO] --- dependency:3.5.0:copy (copy) @ bai --- [INFO] Configured Artifact: org.lorainelab.igb:bai:10.0.0:jar [INFO] Copying bai-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\dynamic\bai-10.0.0.jar [INFO] [INFO] --------------------< org.lorainelab.igb:appstore >--------------------- [INFO] Building Plugin - App Store REST API 10.0.0 [55/56] [INFO] from plugins\AppStore\pom.xml [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- clean:3.3.2:clean (default-clean) @ appstore --- [INFO] Deleting C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\AppStore\target [INFO] [INFO] --- resources:3.3.1:resources (default-resources) @ appstore --- [INFO] Copying 0 resource from src\main\java to target\classes [INFO] skip non existing resourceDirectory C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\AppStore\src\main\resources [INFO] [INFO] --- compiler:3.11.0:compile (default-compile) @ appstore --- [INFO] Changes detected - recompiling the module! :dependency [INFO] Compiling 2 source files with javac [debug target 21] to target\classes [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/plugins/AppStore/src/main/java/org/lorainelab/igb/appstore/IgbAppServer.java: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\AppStore\src\main\java\org\lorainelab\igb\appstore\IgbAppServer.java uses or overrides a deprecated API. [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/plugins/AppStore/src/main/java/org/lorainelab/igb/appstore/IgbAppServer.java: Recompile with -Xlint:deprecation for details. [INFO] [INFO] --- resources:3.3.1:testResources (default-testResources) @ appstore --- [INFO] skip non existing resourceDirectory C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\AppStore\src\test\resources [INFO] [INFO] --- compiler:3.11.0:testCompile (default-testCompile) @ appstore --- [INFO] No sources to compile [INFO] [INFO] --- surefire:3.1.2:test (default-test) @ appstore --- [INFO] Tests are skipped. [INFO] [INFO] --- bundle:5.1.9:bundle (default-bundle) @ appstore --- [WARNING] Bundle org.lorainelab.igb:appstore:bundle:10.0.0 : Service-Component is normally generated by bnd. If you want to point at specific component XML files (wildcards are allowed, see findEntries) make sure it ends in '.xml'. Found * [INFO] Building bundle: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\AppStore\target\appstore-10.0.0.jar [INFO] Writing manifest: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\AppStore\target\classes\META-INF\MANIFEST.MF [INFO] [INFO] --- install:3.1.1:install (default-install) @ appstore --- [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\AppStore\pom.xml to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\appstore\10.0.0\appstore-10.0.0.pom [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\plugins\AppStore\target\appstore-10.0.0.jar to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\appstore\10.0.0\appstore-10.0.0.jar [INFO] [INFO] --- bundle:5.1.9:install (default-install) @ appstore --- [INFO] Installing org/lorainelab/igb/appstore/10.0.0/appstore-10.0.0.jar [INFO] Writing OBR metadata [INFO] [INFO] --- dependency:3.5.0:copy (copy) @ appstore --- [INFO] Configured Artifact: org.lorainelab.igb:appstore:10.0.0:jar [INFO] Copying appstore-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\bundles\appstore-10.0.0.jar [INFO] [INFO] ----------------------< org.lorainelab.igb:main >----------------------- [INFO] Building IGB Main (run me) 10.0.0 [56/56] [INFO] from main\pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- clean:3.3.2:clean (default-clean) @ main --- [INFO] Deleting C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target [INFO] Deleting C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb (includes = [igb_exe.jar], excludes = []) [INFO] [INFO] --- resources:3.3.0:resources (default-resources) @ main --- [INFO] Copying 0 resource [INFO] Copying 2 resources [INFO] [INFO] --- compiler:3.11.0:compile (default-compile) @ main --- [INFO] Changes detected - recompiling the module! :dependency [INFO] Compiling 3 source files with javac [debug target 21] to target\classes [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/main/src/main/java/com/affymetrix/main/OSGiHandler.java: Some input files use or override a deprecated API. [INFO] /C:/Users/Karthik Raveendran/BitbucketProjects/IntegratedGB/karthikfork-igb/main/src/main/java/com/affymetrix/main/OSGiHandler.java: Recompile with -Xlint:deprecation for details. [INFO] [INFO] --- resources:3.3.0:testResources (default-testResources) @ main --- [INFO] skip non existing resourceDirectory C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\src\test\resources [INFO] [INFO] --- compiler:3.11.0:testCompile (default-testCompile) @ main --- [INFO] Changes detected - recompiling the module! :dependency [INFO] [INFO] --- surefire:3.1.2:test (default-test) @ main --- [INFO] Tests are skipped. [INFO] [INFO] --- jar:3.3.0:jar (default-jar) @ main --- [INFO] Building jar: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\main-10.0.0.jar [INFO] [INFO] --- install:3.1.0:install (default-install) @ main --- [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\pom.xml to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\main\10.0.0\main-10.0.0.pom [INFO] Installing C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\main-10.0.0.jar to C:\Users\Karthik Raveendran\.m2\repository\org\lorainelab\igb\main\10.0.0\main-10.0.0.jar [INFO] [INFO] --- dependency:3.5.0:copy-dependencies (copy) @ main --- [INFO] Copying jide-ultimate-jakarta-3.5.15.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\jide-ultimate-jakarta-3.5.15.jar [INFO] Copying jakarta.xml.bind-api-4.0.1.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\jakarta.xml.bind-api-4.0.1.jar [INFO] Copying jaxb-runtime-4.0.1.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\jaxb-runtime-4.0.1.jar [INFO] Copying jakarta.activation-api-2.1.2.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\jakarta.activation-api-2.1.2.jar [INFO] Copying jaxb-core-4.0.1.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\jaxb-core-4.0.1.jar [INFO] Copying txw2-4.0.4.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\txw2-4.0.4.jar [INFO] Copying istack-commons-runtime-4.2.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\istack-commons-runtime-4.2.0.jar [INFO] Copying FastInfoset-2.1.1.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\FastInfoset-2.1.1.jar [INFO] Copying osgi-resource-locator-2.5.0-b42.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\osgi-resource-locator-2.5.0-b42.jar [INFO] Copying affymetrix-common-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\affymetrix-common-10.0.0.jar [INFO] Copying igb-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\igb-10.0.0.jar [INFO] Copying igb-services-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\igb-services-10.0.0.jar [INFO] Copying shared-lib-wrapper-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\shared-lib-wrapper-10.0.0.jar [INFO] Copying org.apache.felix.main-7.0.5.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\org.apache.felix.main-7.0.5.jar [INFO] Copying heatmap-editor-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\heatmap-editor-10.0.0.jar [INFO] Copying genometry-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\genometry-10.0.0.jar [INFO] Copying igbSwingExt-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\igbSwingExt-10.0.0.jar [INFO] Copying window-service-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\window-service-10.0.0.jar [INFO] Copying session-manager-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\session-manager-10.0.0.jar [INFO] Copying keybinding-registry-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\keybinding-registry-10.0.0.jar [INFO] Copying igb-preferences-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\igb-preferences-10.0.0.jar [INFO] Copying weblinks-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\weblinks-10.0.0.jar [INFO] Copying synonym-lookup-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\synonym-lookup-10.0.0.jar [INFO] Copying quickload-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\quickload-10.0.0.jar [INFO] Copying das-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\das-10.0.0.jar [INFO] Copying frameManager-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\frameManager-10.0.0.jar [INFO] Copying igb-javafx-util-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\igb-javafx-util-10.0.0.jar [INFO] Copying guava-32.1.1-jre.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\guava-32.1.1-jre.jar [INFO] Copying failureaccess-1.0.1.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\failureaccess-1.0.1.jar [INFO] Copying gson-2.10.1.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\gson-2.10.1.jar [INFO] Copying commons-lang3-3.12.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\commons-lang3-3.12.0.jar [INFO] Copying commons-csv-1.10.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\commons-csv-1.10.0.jar [INFO] Copying commons-io-2.11.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\commons-io-2.11.0.jar [INFO] Copying genoviz-1.1.9.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\genoviz-1.1.9.jar [INFO] Copying bigwig-2.0.1.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\bigwig-2.0.1.jar [INFO] Copying commons-compress-1.23.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\commons-compress-1.23.0.jar [INFO] Copying commons-logging-1.2.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\commons-logging-1.2.jar [INFO] Copying commons-jexl-2.1.1.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\commons-jexl-2.1.1.jar [INFO] Copying commons-codec-1.15.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\commons-codec-1.15.jar [INFO] Copying commons-pool-1.6.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\commons-pool-1.6.jar [INFO] Copying xz-1.9.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\xz-1.9.jar [INFO] Copying htsjdk-igb-3.0.5.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\htsjdk-igb-3.0.5.jar [INFO] Copying org.apache.felix.webconsole-4.8.8.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\org.apache.felix.webconsole-4.8.8.jar [INFO] Copying commons-fileupload-1.5.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\commons-fileupload-1.5.jar [INFO] Copying org.apache.felix.eventadmin-1.6.4.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\org.apache.felix.eventadmin-1.6.4.jar [INFO] Copying image-exporter-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\image-exporter-10.0.0.jar [INFO] Copying apollo-library-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\apollo-library-10.0.0.jar [INFO] Copying annotation-tab-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\annotation-tab-10.0.0.jar [INFO] Copying console-tab-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\console-tab-10.0.0.jar [INFO] Copying bigBedHandler-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\bigBedHandler-10.0.0.jar [INFO] Copying bigWigHandler-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\bigWigHandler-10.0.0.jar [INFO] Copying bookmark-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\bookmark-10.0.0.jar [INFO] Copying externalView-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\externalView-10.0.0.jar [INFO] Copying graphTab-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\graphTab-10.0.0.jar [INFO] Copying igbScript-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\igbScript-10.0.0.jar [INFO] Copying keyWordSearch-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\keyWordSearch-10.0.0.jar [INFO] Copying ncbiBlast-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\ncbiBlast-10.0.0.jar [INFO] Copying propertyView-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\propertyView-10.0.0.jar [INFO] Copying restrictionSites-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\restrictionSites-10.0.0.jar [INFO] Copying searchModelIdOrProps-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\searchModelIdOrProps-10.0.0.jar [INFO] Copying searchView-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\searchView-10.0.0.jar [INFO] Copying sequenceViewer-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\sequenceViewer-10.0.0.jar [INFO] Copying survey-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\survey-10.0.0.jar [INFO] Copying thresholding-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\thresholding-10.0.0.jar [INFO] Copying update-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\update-10.0.0.jar [INFO] Copying plugins-manager-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\plugins-manager-10.0.0.jar [INFO] Copying paired-data-preprocessor-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\paired-data-preprocessor-10.0.0.jar [INFO] Copying genotyping-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\genotyping-10.0.0.jar [INFO] Copying org.osgi.service.log-1.5.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\org.osgi.service.log-1.5.0.jar [INFO] Copying org.apache.felix.bundlerepository-2.0.10.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\org.apache.felix.bundlerepository-2.0.10.jar [INFO] Copying cache-api-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\cache-api-10.0.0.jar [INFO] Copying cache-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\cache-10.0.0.jar [INFO] Copying feedback-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\feedback-10.0.0.jar [INFO] Copying narrowpeak-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\narrowpeak-10.0.0.jar [INFO] Copying bed-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\bed-10.0.0.jar [INFO] Copying bam-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\bam-10.0.0.jar [INFO] Copying bai-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\bai-10.0.0.jar [INFO] Copying appstore-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\appstore-10.0.0.jar [INFO] Copying slf4j-api-1.7.36.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\slf4j-api-1.7.36.jar [INFO] Copying logback-core-1.2.12.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\logback-core-1.2.12.jar [INFO] Copying logback-classic-1.2.12.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\logback-classic-1.2.12.jar [INFO] Copying logging-config-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\logging-config-10.0.0.jar [INFO] Copying igb-genoviz-extensions-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\igb-genoviz-extensions-10.0.0.jar [INFO] Copying org.apache.felix.scr-2.2.6.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\org.apache.felix.scr-2.2.6.jar [INFO] Copying org.osgi.service.component-1.5.1.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\org.osgi.service.component-1.5.1.jar [INFO] Copying org.osgi.util.promise-1.3.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\org.osgi.util.promise-1.3.0.jar [INFO] Copying org.osgi.util.function-1.2.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\org.osgi.util.function-1.2.0.jar [INFO] Copying external-sort-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\external-sort-10.0.0.jar [INFO] Copying org.lorainelab.igb.menu.api-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\org.lorainelab.igb.menu.api-10.0.0.jar [INFO] Copying context-menu-service-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\context-menu-service-10.0.0.jar [INFO] Copying track-operations-panel-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\track-operations-panel-10.0.0.jar [INFO] Copying org.apache.felix.configadmin-1.9.26.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\org.apache.felix.configadmin-1.9.26.jar [INFO] Copying org.apache.felix.http.servlet-api-2.1.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\org.apache.felix.http.servlet-api-2.1.0.jar [INFO] Copying org.apache.felix.http.jetty-5.1.4.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\org.apache.felix.http.jetty-5.1.4.jar [INFO] Copying org.apache.felix.http.base-5.1.2.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\org.apache.felix.http.base-5.1.2.jar [INFO] [INFO] --- dependency:3.5.0:copy (copy) @ main --- [INFO] Configured Artifact: org.lorainelab.igb:main:10.0.0:jar [INFO] Copying main-10.0.0.jar to C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\main\target\lib\main-10.0.0.jar [INFO] [INFO] --- antrun:1.7:run (buildExecutableJar) @ main --- [INFO] Executing tasks main: [jar] Building jar: C:\Users\Karthik Raveendran\BitbucketProjects\IntegratedGB\karthikfork-igb\igb_exe.jar [INFO] Executed tasks [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary for IGB Project 10.0.0: [INFO] [INFO] IGB Project ........................................ SUCCESS [ 0.259 s] [INFO] Core - Heatmap Editor .............................. SUCCESS [ 3.953 s] [INFO] Core - Affymetrix Common ........................... SUCCESS [ 2.951 s] [INFO] Plugin - Sorting API and Impl ...................... SUCCESS [ 0.945 s] [INFO] Plugin - Data caching API .......................... SUCCESS [ 0.352 s] [INFO] Core - Synonym Lookup .............................. SUCCESS [ 0.846 s] [INFO] Core - Genometry (Data Models) ..................... SUCCESS [ 6.515 s] [INFO] Core - Preferences ................................. SUCCESS [ 0.752 s] [INFO] Core - IGB Swing Extensions ........................ SUCCESS [ 1.204 s] [INFO] Core - Genoviz Extensions .......................... SUCCESS [ 0.583 s] [INFO] Core - IGB Services API ............................ SUCCESS [ 0.626 s] [INFO] Core - Frame Manager ............................... SUCCESS [ 0.409 s] [INFO] Core - Window Service .............................. SUCCESS [ 0.659 s] [INFO] Core - JavaFX Utilities ............................ SUCCESS [ 0.348 s] [INFO] Core - Menu API .................................... SUCCESS [ 0.388 s] [INFO] Core - Context Menu Service ........................ SUCCESS [ 0.359 s] [INFO] Core - IGB ......................................... SUCCESS [ 11.056 s] [INFO] Core - Bundle wrapper, deployer .................... SUCCESS [ 4.566 s] [INFO] Core - Logging Config .............................. SUCCESS [ 0.166 s] [INFO] Core - Web Links ................................... SUCCESS [ 1.004 s] [INFO] Plugin - Data caching GUI .......................... SUCCESS [ 1.108 s] [INFO] Core - Quickload (data source) ..................... SUCCESS [ 0.853 s] [INFO] Core - DAS (data source) ........................... SUCCESS [ 0.993 s] [INFO] Plugin - Apollo Library ............................ SUCCESS [ 0.292 s] [INFO] Plugin - Track Operations API, GUI ................. SUCCESS [ 0.380 s] [INFO] Plugin - Annotation Tab ............................ SUCCESS [ 0.540 s] [INFO] Plugin - Console Tab ............................... SUCCESS [ 0.349 s] [INFO] Plugin - Bigbed data format handler ................ SUCCESS [ 0.261 s] [INFO] Plugin - Bigwig data format handler ................ SUCCESS [ 0.395 s] [INFO] Plugin - Bookmarks and REST API .................... SUCCESS [ 1.319 s] [INFO] Plugin - External View ............................. SUCCESS [ 0.715 s] [INFO] Plugin - Graph Tab ................................. SUCCESS [ 0.428 s] [INFO] Plugin - Save Image GUI ............................ SUCCESS [ 0.837 s] [INFO] Plugin - Script handler ............................ SUCCESS [ 0.513 s] [INFO] Plugin - Keyword Search ............................ SUCCESS [ 0.275 s] [INFO] Plugin - NCBI Blast ................................ SUCCESS [ 0.620 s] [INFO] Plugin - Selection Info tab ........................ SUCCESS [ 0.414 s] [INFO] Plugin - Restriction Sites tab ..................... SUCCESS [ 0.367 s] [INFO] Plugin - Search Id or Props ........................ SUCCESS [ 0.508 s] [INFO] Plugin - Advanced Search Tab ....................... SUCCESS [ 0.620 s] [INFO] Plugin - Sequence Viewer GUI ....................... SUCCESS [ 0.527 s] [INFO] Plugin - Survey GUI ................................ SUCCESS [ 0.431 s] [INFO] Plugin - Graph thresholding visual analytics ....... SUCCESS [ 0.442 s] [INFO] Plugin - Update .................................... SUCCESS [ 0.452 s] [INFO] Plugin - App Manager GUI ........................... SUCCESS [ 1.735 s] [INFO] Plugin - Paired-end Read Preprocessor .............. SUCCESS [ 0.315 s] [INFO] Plugin - Save Session Manager ...................... SUCCESS [ 0.398 s] [INFO] Plugin - Toolbar Preferences GUI ................... SUCCESS [ 0.771 s] [INFO] Plugin - Feedback .................................. SUCCESS [ 0.471 s] [INFO] Plugin - Narrowpeak data format handler ............ SUCCESS [ 0.484 s] [INFO] Plugin - File Handler - Genotyping Results ........ SUCCESS [ 0.755 s] [INFO] Plugin - BED file format handler ................... SUCCESS [ 0.832 s] [INFO] Plugin - BAM data format handler ................... SUCCESS [ 0.668 s] [INFO] Plugin - BAI index visualization handler ........... SUCCESS [ 0.603 s] [INFO] Plugin - App Store REST API ........................ SUCCESS [ 0.409 s] [INFO] IGB Main (run me) .................................. SUCCESS [ 9.652 s] [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ [INFO] Total time: 01:10 min [INFO] Finished at: 2024-01-18T11:27:08-05:00 [INFO] ------------------------------------------------------------------------ [WARNING] [WARNING] Plugin validation issues were detected in 5 plugin(s) [WARNING] [WARNING] * org.apache.maven.plugins:maven-dependency-plugin:3.5.0 [WARNING] * org.apache.felix:maven-bundle-plugin:5.1.9 [WARNING] * pl.project13.maven:git-commit-id-plugin:4.9.10 [WARNING] * org.apache.maven.plugins:maven-resources-plugin:3.3.0 [WARNING] * org.apache.maven.plugins:maven-antrun-plugin:1.7 [WARNING] [WARNING] For more or less details, use 'maven.plugin.validation' property with one of the values (case insensitive): [BRIEF, DEFAULT, VERBOSE] [WARNING]