[BUG-109] Property search NPE - JIRA UNCC

Details

Type: Bug
Status: Closed (View Workflow)
Priority: Major
Resolution: Fixed
Labels:
None
Environment:

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Running IGB from the trunk:

Path: .
URL: https://genoviz.svn.sourceforge.net/svnroot/genoviz/trunk
Repository Root: https://genoviz.svn.sourceforge.net/svnroot/genoviz
Repository UUID: 02abc639-694f-0410-96dc-a5594cd59667
Revision: 8022
Node Kind: directory
Schedule: normal
Last Changed Author: hiralv
Last Changed Rev: 8022
Last Changed Date: 2011-04-18 10:15:38 -0400 (Mon, 18 Apr 2011)

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Running IGB from the trunk: Path: . URL: https://genoviz.svn.sourceforge.net/svnroot/genoviz/trunk Repository Root: https://genoviz.svn.sourceforge.net/svnroot/genoviz Repository UUID: 02abc639-694f-0410-96dc-a5594cd59667 Revision: 8022 Node Kind: directory Schedule: normal Last Changed Author: hiralv Last Changed Rev: 8022 Last Changed Date: 2011-04-18 10:15:38 -0400 (Mon, 18 Apr 2011)

Description

Property search causes an error:

To repeat:

Launch IGB.
Choose a genome.
Click Search tab.
Choose "Properties" in "genome" and enter + search string. Click Search.

Observe the console reports a NullPointerException:

[java] Exception in thread "pool-10-thread-1" java.lang.NullPointerException
[java] at java.lang.String.compareTo(String.java:1167)
[java] at com.affymetrix.igb.search.SearchView$3$1.compare(SearchView.java:503)
[java] at com.affymetrix.igb.search.SearchView$3$1.compare(SearchView.java:501)
[java] at java.util.Arrays.mergeSort(Arrays.java:1270)
[java] at java.util.Arrays.mergeSort(Arrays.java:1282)
[java] at java.util.Arrays.mergeSort(Arrays.java:1282)
[java] at java.util.Arrays.mergeSort(Arrays.java:1282)
[java] at java.util.Arrays.mergeSort(Arrays.java:1281)
[java] at java.util.Arrays.mergeSort(Arrays.java:1282)
[java] at java.util.Arrays.mergeSort(Arrays.java:1282)
[java] at java.util.Arrays.mergeSort(Arrays.java:1281)
[java] at java.util.Arrays.mergeSort(Arrays.java:1282)
[java] at java.util.Arrays.mergeSort(Arrays.java:1282)
[java] at java.util.Arrays.mergeSort(Arrays.java:1282)
[java] at java.util.Arrays.mergeSort(Arrays.java:1282)
[java] at java.util.Arrays.sort(Arrays.java:1210)
[java] at java.util.Collections.sort(Collections.java:159)
[java] at com.affymetrix.igb.search.SearchView$3.run(SearchView.java:501)
[java] at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
[java] at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
[java] at java.lang.Thread.run(Thread.java:680)

Attachments

Issue Links

is blocked by

BUG-648 Search bugs

Closed

Activity

Ascending order - Click to sort in descending order

Ann Loraine created issue - 18/Apr/11 7:53 AM

Ann Loraine made changes - 18/Apr/11 7:53 AM

Field	Original Value	New Value
Assignee	Ann Loraine [ aloraine ]	Hiral Vora [ hiralv ]

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Hiral Vora (Inactive) added a comment - 18/Apr/11 9:02 AM

Fixed.

While checking this also make sure that search is not broken and it still returns results as expected.

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Hiral Vora (Inactive) added a comment - 18/Apr/11 9:02 AM Fixed. While checking this also make sure that search is not broken and it still returns results as expected.

Hiral Vora (Inactive) made changes - 18/Apr/11 9:02 AM

Assignee

Hiral Vora [ hiralv ]

Alyssa Gulledge [ alyssa ]

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Alyssa Gulledge (Inactive) added a comment - 18/Apr/11 9:25 AM - edited

[search bugs moved to an independent bug report.]

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Alyssa Gulledge (Inactive) added a comment - 18/Apr/11 9:25 AM - edited [search bugs moved to an independent bug report.]

Alyssa Gulledge (Inactive) made changes - 18/Apr/11 9:25 AM

Assignee

Alyssa Gulledge [ alyssa ]

Hiral Vora [ hiralv ]

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Hiral Vora (Inactive) added a comment - 16/May/11 10:08 AM

1 & 2 should be fixed.
Third is not a bug.

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Hiral Vora (Inactive) added a comment - 16/May/11 10:08 AM 1 & 2 should be fixed. Third is not a bug.

Hiral Vora (Inactive) made changes - 16/May/11 10:08 AM

Assignee

Hiral Vora [ hiralv ]

Alyssa Gulledge [ alyssa ]

Alyssa Gulledge (Inactive) made changes - 26/May/11 7:24 AM

Assignee

Alyssa Gulledge [ alyssa ]

Nick Ren [ imnick ]

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Nick Ren (Inactive) added a comment - 27/May/11 5:54 AM - edited

First, I used any genome to test property search. It works well and doesn't show NPE.

In addition, I test Bug1. It works. After search on genome, it will give all result.

About Bug2, it's not very clear for me. My test result is "the search list will not clear when hopping between different chromosome".

I didn't test Bug3 since Hiral said this is not a bug.

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Nick Ren (Inactive) added a comment - 27/May/11 5:54 AM - edited First, I used any genome to test property search. It works well and doesn't show NPE. In addition, I test Bug1. It works. After search on genome, it will give all result. About Bug2, it's not very clear for me. My test result is "the search list will not clear when hopping between different chromosome". I didn't test Bug3 since Hiral said this is not a bug.

Nick Ren (Inactive) made changes - 27/May/11 5:54 AM

Assignee

Nick Ren [ imnick ]

Alyssa Gulledge [ alyssa ]

Alyssa Gulledge (Inactive) made changes - 03/Jun/11 7:52 AM

Status	Open [ 1 ]	Resolved [ 5 ]
Resolution		Fixed [ 1 ]

Alyssa Gulledge (Inactive) made changes - 03/Jun/11 7:52 AM

Status

Resolved [ 5 ]

Closed [ 6 ]

Alyssa Gulledge (Inactive) made changes - 03/Jun/11 7:52 AM

Project	IGB6.6 [ 10021 ]	Bug Repository [ 10030 ]
Key	~~IGBA-22~~	~~BUG-109~~

Alyssa Gulledge (Inactive) made changes - 31/Aug/11 5:54 AM

Resolution	Fixed [ 1 ]
Status	Closed [ 6 ]	Reopened [ 4 ]

Nick Ren (Inactive) made changes - 31/Aug/11 7:26 AM

Assignee

Alyssa Gulledge [ alyssa ]

Nick Ren (Inactive) made changes - 31/Aug/11 7:26 AM

Status	Reopened [ 4 ]	Resolved [ 5 ]
Resolution		Fixed [ 1 ]

Nick Ren (Inactive) made changes - 31/Aug/11 7:26 AM

Status

Resolved [ 5 ]

Closed [ 6 ]

Alyssa Gulledge (Inactive) made changes - 10/Jan/12 8:56 AM

Resolution	Fixed [ 1 ]
Status	Closed [ 6 ]	Reopened [ 4 ]
Assignee		Katharine Kubiak [ kkubiak ]

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Katharine Kubiak (Inactive) added a comment - 17/Jan/12 8:47 AM

Passed v9804 Windows

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Katharine Kubiak (Inactive) added a comment - 17/Jan/12 8:47 AM Passed v9804 Windows

Katharine Kubiak (Inactive) made changes - 17/Jan/12 8:47 AM

Assignee

Katharine Kubiak [ kkubiak ]

Anuj Puram [ anuj ]

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Anuj Puram (Inactive) added a comment - 18/Jan/12 5:11 AM

passed 6.7.0 (9824) on Mac

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Anuj Puram (Inactive) added a comment - 18/Jan/12 5:11 AM passed 6.7.0 (9824) on Mac

Anuj Puram (Inactive) made changes - 18/Jan/12 5:11 AM

Assignee

Anuj Puram [ anuj ]

Alyssa Gulledge [ alyssa ]

Alyssa Gulledge (Inactive) made changes - 18/Jan/12 7:06 AM

Status	Reopened [ 4 ]	Resolved [ 5 ]
Assignee	Alyssa Gulledge [ alyssa ]
Resolution		Fixed [ 1 ]

Alyssa Gulledge (Inactive) made changes - 18/Jan/12 7:06 AM

Status

Resolved [ 5 ]

Closed [ 6 ]

Vineeth Mylapur (Inactive) made changes - 08/Jun/12 8:42 AM

Resolution	Fixed [ 1 ]
Status	Closed [ 6 ]	Reopened [ 4 ]
Assignee		Vineeth Mylapur [ smylapur ]

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Vineeth Mylapur (Inactive) added a comment - 08/Jun/12 8:52 AM

Passed 7.0 (11891) on Windows

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Vineeth Mylapur (Inactive) added a comment - 08/Jun/12 8:52 AM Passed 7.0 (11891) on Windows

Vineeth Mylapur (Inactive) made changes - 08/Jun/12 8:52 AM

Status	Reopened [ 4 ]	Resolved [ 5 ]
Assignee	Vineeth Mylapur [ smylapur ]
Resolution		Fixed [ 1 ]

Richard Linchangco (Inactive) made changes - 13/Nov/12 9:57 AM

Resolution	Fixed [ 1 ]
Status	Resolved [ 5 ]	Reopened [ 4 ]
Assigned Group	[jira-developers]

Alyssa Gulledge (Inactive) made changes - 28/Nov/12 11:09 AM

Link

This issue is blocked by ~~BUG-648~~ [ ~~BUG-648~~ ]

Alyssa Gulledge (Inactive) made changes - 17/Dec/12 10:28 AM

Status	Reopened [ 4 ]	Resolved [ 5 ]
Resolution		Fixed [ 1 ]

Alyssa Gulledge (Inactive) made changes - 18/Dec/12 7:02 AM

Status

Resolved [ 5 ]

Closed [ 6 ]

Tarun Santosh (Inactive) made changes - 02/Oct/13 7:07 AM

Resolution	Fixed [ 1 ]
Status	Closed [ 6 ]	Reopened [ 4 ]
Assignee		Tarun Santosh [ tkanapar ]

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Tarun Santosh (Inactive) added a comment - 02/Oct/13 10:07 AM

Passed (7.0.4) 15381(Mac)

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Tarun Santosh (Inactive) added a comment - 02/Oct/13 10:07 AM Passed (7.0.4) 15381(Mac)

Tarun Santosh (Inactive) made changes - 02/Oct/13 10:07 AM

Status	Reopened [ 4 ]	Closed [ 6 ]
Resolution		Fixed [ 1 ]

Hiral Vora (Inactive) made changes - 16/Oct/13 4:33 AM

Resolution	Fixed [ 1 ]
Status	Closed [ 6 ]	Reopened [ 4 ]
Assignee	Tarun Santosh [ tkanapar ]

Hiral Vora (Inactive) made changes - 16/Oct/13 4:35 AM

Status	Reopened [ 4 ]	Closed [ 6 ]
Resolution		Fixed [ 1 ]

People

Assignee:

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Reporter:

Ann Loraine

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Dates

Created:

18/Apr/11 7:53 AM

Updated:

16/Oct/13 4:35 AM

Resolved:

16/Oct/13 4:35 AM