Details
-
Type:
Bug
-
Status: Closed (View Workflow)
-
Priority:
Major
-
Resolution: Fixed
-
Labels:None
-
Environment:
Running IGB from the trunk:
Path: .
URL: https://genoviz.svn.sourceforge.net/svnroot/genoviz/trunk
Repository Root: https://genoviz.svn.sourceforge.net/svnroot/genoviz
Repository UUID: 02abc639-694f-0410-96dc-a5594cd59667
Revision: 8022
Node Kind: directory
Schedule: normal
Last Changed Author: hiralv
Last Changed Rev: 8022
Last Changed Date: 2011-04-18 10:15:38 -0400 (Mon, 18 Apr 2011)Running IGB from the trunk: Path: . URL: https://genoviz.svn.sourceforge.net/svnroot/genoviz/trunk Repository Root: https://genoviz.svn.sourceforge.net/svnroot/genoviz Repository UUID: 02abc639-694f-0410-96dc-a5594cd59667 Revision: 8022 Node Kind: directory Schedule: normal Last Changed Author: hiralv Last Changed Rev: 8022 Last Changed Date: 2011-04-18 10:15:38 -0400 (Mon, 18 Apr 2011)
Description
Property search causes an error:
To repeat:
Launch IGB.
Choose a genome.
Click Search tab.
Choose "Properties" in "genome" and enter + search string. Click Search.
Observe the console reports a NullPointerException:
[java] Exception in thread "pool-10-thread-1" java.lang.NullPointerException
[java] at java.lang.String.compareTo(String.java:1167)
[java] at com.affymetrix.igb.search.SearchView$3$1.compare(SearchView.java:503)
[java] at com.affymetrix.igb.search.SearchView$3$1.compare(SearchView.java:501)
[java] at java.util.Arrays.mergeSort(Arrays.java:1270)
[java] at java.util.Arrays.mergeSort(Arrays.java:1282)
[java] at java.util.Arrays.mergeSort(Arrays.java:1282)
[java] at java.util.Arrays.mergeSort(Arrays.java:1282)
[java] at java.util.Arrays.mergeSort(Arrays.java:1281)
[java] at java.util.Arrays.mergeSort(Arrays.java:1282)
[java] at java.util.Arrays.mergeSort(Arrays.java:1282)
[java] at java.util.Arrays.mergeSort(Arrays.java:1281)
[java] at java.util.Arrays.mergeSort(Arrays.java:1282)
[java] at java.util.Arrays.mergeSort(Arrays.java:1282)
[java] at java.util.Arrays.mergeSort(Arrays.java:1282)
[java] at java.util.Arrays.mergeSort(Arrays.java:1282)
[java] at java.util.Arrays.sort(Arrays.java:1210)
[java] at java.util.Collections.sort(Collections.java:159)
[java] at com.affymetrix.igb.search.SearchView$3.run(SearchView.java:501)
[java] at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
[java] at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
[java] at java.lang.Thread.run(Thread.java:680)
Attachments
Issue Links
- is blocked by
-
BUG-648 Search bugs
-
- Closed
-
Activity
[search bugs moved to an independent bug report.]
1 & 2 should be fixed.
Third is not a bug.
First, I used any genome to test property search. It works well and doesn't show NPE.
In addition, I test Bug1. It works. After search on genome, it will give all result.
About Bug2, it's not very clear for me. My test result is "the search list will not clear when hopping between different chromosome".
I didn't test Bug3 since Hiral said this is not a bug.
Passed v9804 Windows
passed 6.7.0 (9824) on Mac
Passed 7.0 (11891) on Windows
Passed (7.0.4) 15381(Mac)
Fixed.
While checking this also make sure that search is not broken and it still returns results as expected.